Volume 2; Issue 1

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Virus Evolution
Volume 2; Issue 1

Virus Evolution

Volume 2; Issue 1

1

MERS-CoV recombination: implications about the reservoir and potential for adaptation

Dudas, Gytis, Rambaut, Andrew

Journal:

Virus Evolution

Année:

2016

Langue:

english

Fichier:

PDF, 1.05 MB

english, 2016

2

Coevolutionary Analysis Identifies Protein–Protein Interaction Sites between HIV-1 Reverse Transcriptase and Integrase

Hetti Arachchilage, Madara, Piontkivska, Helen

Journal:

Virus Evolution

Année:

2016

Langue:

english

Fichier:

PDF, 294 KB

english, 2016

3

Increasing virulence, but not infectivity, associated with serially emergent virus strains of a fish rhabdovirus

Breyta, Rachel, McKenney, Doug, Tesfaye, Tarin, Ono, Kotaro, Kurath, Gael

Journal:

Virus Evolution

Année:

2016

Fichier:

PDF, 3.10 MB

2016

4

Evolution in spatially mixed host environments increases divergence for evolved fitness and intrapopulation genetic diversity in RNA viruses

Morley, Valerie J., Sistrom, Mark, Usme-Ciro, Jose A., Remold, Susanna K., Turner, Paul E.

Journal:

Virus Evolution

Année:

2016

Langue:

english

Fichier:

PDF, 290 KB

english, 2016

5

Driving forces behind the evolution of the Aleutian mink disease parvovirus in the context of intensive farming

Canuti, Marta, O’Leary, Kimberly E., Hunter, Bruce D., Spearman, Grant, Ojkic, Davor, Whitney, Hugh G., Lang, Andrew S.

Journal:

Virus Evolution

Année:

2016

Langue:

english

Fichier:

PDF, 2.02 MB

english, 2016

6

Increasing virulence, but not infectivity, associated with serially emergent virus strains of a fish rhabdovirus

Breyta, Rachel, McKenney, Doug, Tesfaye, Tarin, Ono, Kotaro, Kurath, Gael

Journal:

Virus Evolution

Année:

2016

Langue:

english

Fichier:

PDF, 3.10 MB

english, 2016

7

Determination of antigenicity-altering patches on the major surface protein of human influenza A/H3N2 viruses

Kratsch, Christina, Klingen, Thorsten R., Mümken, Linda, Steinbrück, Lars, McHardy, Alice C.

Journal:

Virus Evolution

Année:

2016

Langue:

english

Fichier:

PDF, 1.02 MB

english, 2016

8

A Novel Astrovirus-Like RNA Virus Detected in Human Stool

Oude Munnink, Bas B., Cotten, Matthew, Canuti, Marta, Deijs, Martin, Jebbink, Maarten F., van Hemert, Formijn J., Phan, My V. T., Bakker, Margreet, Jazaeri Farsani, Seyed Mohammad, Kellam, Paul, van d

Journal:

Virus Evolution

Année:

2016

Langue:

english

Fichier:

PDF, 1007 KB

english, 2016

9

Evolution and phylogeographic dissemination of endemic porcine picornaviruses in Vietnam

Lu, Lu, Van Dung, Nguyen, Bryant, Juliet E., Carrique-Mas, Juan, Van Cuong, Nguyen, Anh, Pham Honh, Rabaa, Maia A., Baker, Stephen, Simmonds, Peter, Woolhouse, Mark E.

Journal:

Virus Evolution

Année:

2016

Langue:

english

Fichier:

PDF, 870 KB

english, 2016

10

Genetic variation in fitness within a clonal population of a plant RNA virus

Cervera, Héctor, Elena, Santiago F.

Journal:

Virus Evolution

Année:

2016

Langue:

english

Fichier:

PDF, 319 KB

english, 2016

11

Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen)

Rambaut, Andrew, Lam, Tommy T., Max Carvalho, Luiz, Pybus, Oliver G.

Journal:

Virus Evolution

Année:

2016

Langue:

english

Fichier:

PDF, 582 KB

english, 2016

12

Sendai virus intra-host population dynamics and host immunocompetence influence viral virulence during in vivo passage

Peña, José, Chen-Harris, Haiyin, Allen, Jonathan E., Hwang, Mona, Elsheikh, Maher, Mabery, Shalini, Bielefeldt-Ohmann, Helle, Zemla, Adam T., Bowen, Richard A., Borucki, Monica K.

Journal:

Virus Evolution

Année:

2016

Langue:

english

Fichier:

PDF, 1.76 MB

english, 2016

13

HIV-1 transmission between MSM and heterosexuals, and increasing proportions of circulating recombinant forms in the Nordic Countries

Esbjörnsson, Joakim, Mild, Mattias, Audelin, Anne, Fonager, Jannik, Skar, Helena, Bruun Jørgensen, Louise, Liitsola, Kirsi, Björkman, Per, Bratt, Göran, Gisslén, Magnus, Sönnerborg, Anders, Nielsen, C

Journal:

Virus Evolution

Année:

2016

Langue:

english

Fichier:

PDF, 641 KB

english, 2016

14

Genetic diversity of STLV-2 and interspecies transmission of STLV-3 in wild-living bonobos

Ahuka-Mundeke, Steve, Lunguya-Metila, Octavie, Mbenzo-Abokome, Valentin, Butel, Christelle, Inogwabini, Bila-Isia, Omasombo, Valentin, Muyembe-Tamfum, Jean-Jacques, Georgiev, Alexander V., Muller, Mar

Journal:

Virus Evolution

Année:

2016

Langue:

english

Fichier:

PDF, 1024 KB

english, 2016

15

Inference of Japanese encephalitis virus ecological and evolutionary dynamics from passive and active virus surveillance

Pham, Truc T., Meng, Shengli, Sun, Yan, Lv, Wenli, Bahl, Justin

Journal:

Virus Evolution

Année:

2016

Langue:

english

Fichier:

PDF, 889 KB

english, 2016

16

Islands of linkage in an ocean of pervasive recombination reveals two-speed evolution of human cytomegalovirus genomes

Lassalle, Florent, Depledge, Daniel P., Reeves, Matthew B., Brown, Amanda C., Christiansen, Mette T., Tutill, Helena J., Williams, Rachel J., Einer-Jensen, Katja, Holdstock, Jolyon, Atkinson, Claire,

Journal:

Virus Evolution

Année:

2016

Langue:

english

Fichier:

PDF, 981 KB

english, 2016

17

Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases

Arias, Armando, Watson, Simon J., Asogun, Danny, Tobin, Ekaete Alice, Lu, Jia, Phan, My V. T., Jah, Umaru, Wadoum, Raoul Emeric Guetiya, Meredith, Luke, Thorne, Lucy, Caddy, Sarah, Tarawalie, Alimamy,

Journal:

Virus Evolution

Année:

2016

Langue:

english

Fichier:

PDF, 1019 KB

english, 2016

18

Antiviral drug resistance as an adaptive process

Irwin, Kristen K., Renzette, Nicholas, Kowalik, Timothy F., Jensen, Jeffrey D.

Journal:

Virus Evolution

Année:

2016

Langue:

english

Fichier:

PDF, 330 KB

english, 2016

19

Genetic changes found in a distinct clade of Enterovirus D68 associated with paralysis during the 2014 outbreak

Zhang, Yun, Cao, Jing, Zhang, Song, Lee, Alexandra J., Sun, Guangyu, Larsen, Christopher N., Zhao, Hongtao, Gu, Zhiping, He, Sherry, Klem, Edward B., Scheuermann, Richard H.

Journal:

Virus Evolution

Année:

2016

Fichier:

PDF, 1.76 MB

2016

20

Fusion of a superfamily 1 helicase and an inactivated DNA polymerase is a signature of common evolutionary history of Polintons, polinton-like viruses, Tlr1 transposons and transpovirons

Krupovic, Mart, Yutin, Natalya, Koonin, Eugene V.

Journal:

Virus Evolution

Année:

2016

Langue:

english

Fichier:

PDF, 467 KB

english, 2016

21

Genetic changes found in a distinct clade of Enterovirus D68 associated with paralysis during the 2014 outbreak

Zhang, Yun, Cao, Jing, Zhang, Song, Lee, Alexandra J., Sun, Guangyu, Larsen, Christopher N., Zhao, Hongtao, Gu, Zhiping, He, Sherry, Klem, Edward B., Scheuermann, Richard H.

Journal:

Virus Evolution

Année:

2016

Langue:

english

Fichier:

PDF, 1.76 MB

english, 2016

22

The effects of sampling strategy on the quality of reconstruction of viral population dynamics using Bayesian skyline family coalescent methods: A simulation study

Hall, Matthew D., Woolhouse, Mark E. J., Rambaut, Andrew

Journal:

Virus Evolution

Année:

2016

Langue:

english

Fichier:

PDF, 2.59 MB

english, 2016