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Volume 4; Issue 1
Main
BMC Systems Biology
Volume 4; Issue 1
BMC Systems Biology
Volume 4; Issue 1
1
A Novel microRNA and transcription factor mediated regulatory network in schizophrenia
An-Yuan Guo
,
Jingchun Sun
,
Peilin Jia
,
Zhongming Zhao
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.65 MB
Vos balises:
english, 2010
2
Integration of metabolic databases for the reconstruction of genome-scale metabolic networks
Karin Radrich
,
Yoshimasa Tsuruoka
,
Paul Dobson
,
Albert Gevorgyan
,
Neil Swainston
,
Gino Baart
,
Jean-Marc Schwartz
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.34 MB
Vos balises:
english, 2010
3
Curating the innate immunity interactome
David J Lynn
,
Calvin Chan
,
Misbah Naseer
,
Melissa Yau
,
Raymond Lo
,
Anastasia Sribnaia
,
Giselle Ring
,
Jaimmie Que
,
Kathleen Wee
,
Geoffrey L Winsor
,
Matthew R Laird
,
Karin Breuer
,
Amir K Foroushani
,
Fio
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.04 MB
Vos balises:
english, 2010
4
Transcriptional regulation of respiration in yeast metabolizing differently repressive carbon substrates
Sarah-Maria Fendt
,
Uwe Sauer
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 550 KB
Vos balises:
english, 2010
5
Antimalarial drug targets in Plasmodium falciparum predicted by stage-specific metabolic network analysis
Carola Huthmacher
,
Andreas Hoppe
,
Sascha Bulik
,
Hermann-Georg Holzhütter
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.27 MB
Vos balises:
english, 2010
6
Gene expression model (in)validation by Fourier analysis
Tomasz Konopka
,
Marianne Rooman
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 489 KB
Vos balises:
english, 2010
7
A predictive computational model of the kinetic mechanism of stimulus-induced transducer methylation and feedback regulation through CheY in archaeal phototaxis and chemotaxis
Stefan Streif
,
Dieter Oesterhelt
,
Wolfgang Marwan
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.87 MB
Vos balises:
english, 2010
8
Automated characterization of cell shape changes during amoeboid motility by skeletonization
Yuan Xiong
,
Cathryn Kabacoff
,
Jonathan Franca-Koh
,
Peter N Devreotes
,
Douglas N Robinson
,
Pablo A Iglesias
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 3.47 MB
Vos balises:
english, 2010
9
Discriminating between rival biochemical network models: three approaches to optimal experiment design
Bence Mélykúti
,
Elias August
,
Antonis Papachristodoulou
,
Hana El-Samad
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 452 KB
Vos balises:
english, 2010
10
Evolution of metabolic network organization
Aurélien Mazurie
,
Danail Bonchev
,
Benno Schwikowski
,
Gregory A Buck
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 591 KB
Vos balises:
english, 2010
11
Correlation Network Analysis reveals a sequential reorganization of metabolic and transcriptional states during germination and gene-metabolite relationships in developing seedlings of Arabidopsis
Elizabeth Allen
,
Annick Moing
,
Timothy MD Ebbels
,
Mickaël Maucourt
,
A Deri Tomos
,
Dominique Rolin
,
Mark A Hooks
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.71 MB
Vos balises:
english, 2010
12
The mEPN scheme: an intuitive and flexible graphical system for rendering biological pathways
Tom C Freeman
,
Sobia Raza
,
Athanasios Theocharidis
,
Peter Ghazal
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.52 MB
Vos balises:
english, 2010
13
Reconstruction of the yeast protein-protein interaction network involved in nutrient sensing and global metabolic regulation
Subir K Nandy
,
Paula Jouhten
,
Jens Nielsen
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 3.33 MB
Vos balises:
english, 2010
14
Mathematical modeling of translation initiation for the estimation of its efficiency to computationally design mRNA sequences with desired expression levels in prokaryotes
Dokyun Na
,
Sunjae Lee
,
Doheon Lee
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.65 MB
Vos balises:
english, 2010
15
Individual fates of mesenchymal stem cellsin vitro
Axel Krinner
,
Martin Hoffmann
,
Markus Loeffler
,
Dirk Drasdo
,
Joerg Galle
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.13 MB
Vos balises:
english, 2010
16
Co-expression module analysis reveals biological processes, genomic gain, and regulatory mechanisms associated with breast cancer progression
Zhiao Shi
,
Catherine K Derow
,
Bing Zhang
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.22 MB
Vos balises:
english, 2010
17
Ordered structure of the transcription network inherited from the yeast whole-genome duplication
Diana Fusco
,
Luigi Grassi
,
Bruno Bassetti
,
Michele Caselle
,
Marco Cosentino Lagomarsino
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 866 KB
Vos balises:
english, 2010
18
The biological context of HIV-1 host interactions reveals subtle insights into a system hijack
Jonathan E Dickerson
,
John W Pinney
,
David L Robertson
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.47 MB
Vos balises:
english, 2010
19
Monotonicity, frustration, and ordered response: an analysis of the energy landscape of perturbed large-scale biological networks
Giovanni Iacono
,
Claudio Altafini
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 4.05 MB
Vos balises:
english, 2010
20
Comparative analysis of cis-regulation following stroke and seizures in subspaces of conserved eigensystems
Michal Dabrowski
,
Norbert Dojer
,
Malgorzata Zawadzka
,
Jakub Mieczkowski
,
Bozena Kaminska
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.60 MB
Vos balises:
english, 2010
21
Fathead minnow steroidogenesis:in silicoanalyses reveals tradeoffs between nominal target efficacy and robustness to cross-talk
Jason E Shoemaker
,
Kalyan Gayen
,
Natàlia Garcia-Reyero
,
Edward J Perkins
,
Daniel L Villeneuve
,
Li Liu
,
Francis J Doyle
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 4.42 MB
Vos balises:
english, 2010
22
Diffusion is capable of translating anisotropic apoptosis initiation into a homogeneous execution of cell death
Heinrich J Huber
,
Maike A Laussmann
,
Jochen HM Prehn
,
Markus Rehm
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.67 MB
Vos balises:
english, 2010
23
BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models
Chen Li
,
Marco Donizelli
,
Nicolas Rodriguez
,
Harish Dharuri
,
Lukas Endler
,
Vijayalakshmi Chelliah
,
Lu Li
,
Enuo He
,
Arnaud Henry
,
Melanie I Stefan
,
Jacky L Snoep
,
Michael Hucka
,
Nicolas Le Novère
,
Cami
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.71 MB
Vos balises:
english, 2010
24
Predicting functional associations from metabolism using bi-partite network algorithms
Balaji Veeramani
,
Joel S Bader
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 702 KB
Vos balises:
english, 2010
25
Mathematical modeling of the dynamic storage of iron in ferritin
J Cristian Salgado
,
Alvaro Olivera-Nappa
,
Ziomara P Gerdtzen
,
Victoria Tapia
,
Elizabeth C Theil
,
Carlos Conca
,
Marco T Nuñez
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 3.73 MB
Vos balises:
english, 2010
26
A formal model for analyzing drug combination effects and its application in TNF-α-induced NFκB pathway
Han Yan
,
Bo Zhang
,
Shao Li
,
Qianchuan Zhao
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.15 MB
Vos balises:
english, 2010
27
Hematopoietic differentiation: a coordinated dynamical process towards attractor stable states
Nadia Felli
,
Luciano Cianetti
,
Elvira Pelosi
,
Alessandra Carè
,
Chang Gong Liu
,
George A Calin
,
Simona Rossi
,
Cesare Peschle
,
Giovanna Marziali
,
Alessandro Giuliani
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 3.71 MB
Vos balises:
english, 2010
28
Snazer: the simulations and networks analyzer
Tommaso Mazza
,
Gennaro Iaccarino
,
Corrado Priami
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.56 MB
Vos balises:
english, 2010
29
The function of communities in protein interaction networks at multiple scales
Anna CF Lewis
,
Nick S Jones
,
Mason A Porter
,
Charlotte M Deane
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 869 KB
Vos balises:
english, 2010
30
Continuous-time modeling of cell fate determination in Arabidopsis flowers
Simon van Mourik
,
Aalt DJ van Dijk
,
Maarten de Gee
,
Richard GH Immink
,
Kerstin Kaufmann
,
Gerco C Angenent
,
Roeland CHJ van Ham
,
Jaap Molenaar
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.22 MB
Vos balises:
english, 2010
31
Inferring modules from human protein interactome classes
Elisabetta Marras
,
Antonella Travaglione
,
Gautam Chaurasia
,
Matthias Futschik
,
Enrico Capobianco
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 9.92 MB
Vos balises:
english, 2010
32
A quantitative approach to study indirect effects among disease proteins in the human protein interaction network
Thanh-Phuong Nguyen
,
Ferenc Jordán
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.64 MB
Vos balises:
english, 2010
33
Increased entropy of signal transduction in the cancer metastasis phenotype
Andrew E Teschendorff
,
Simone Severini
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.44 MB
Vos balises:
english, 2010
34
Model-based extension of high-throughput to high-content data
Andrea C Pfeifer
,
Daniel Kaschek
,
Julie Bachmann
,
Ursula Klingmüller
,
Jens Timmer
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.32 MB
Vos balises:
english, 2010
35
Integrative multicellular biological modeling: a case study of 3D epidermal development using GPU algorithms
Scott Christley
,
Briana Lee
,
Xing Dai
,
Qing Nie
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.27 MB
Vos balises:
english, 2010
36
Bridging time scales in cellular decision making with a stochastic bistable switch
Steffen Waldherr
,
Jingbo Wu
,
Frank Allgöwer
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.79 MB
Vos balises:
english, 2010
37
DBSolve Optimum: a software package for kinetic modeling which allows dynamic visualization of simulation results
Nail M Gizzatkulov
,
Igor I Goryanin
,
Eugeny A Metelkin
,
Ekaterina A Mogilevskaya
,
Kirill V Peskov
,
Oleg V Demin
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 714 KB
Vos balises:
english, 2010
38
An iterative identification procedure for dynamic modeling of biochemical networks
Eva Balsa-Canto
,
Antonio A Alonso
,
Julio R Banga
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.06 MB
Vos balises:
english, 2010
39
Simulation methods with extended stability for stiff biochemical Kinetics
Pau Rué
,
Jordi Villà-Freixa
,
Kevin Burrage
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 899 KB
Vos balises:
english, 2010
40
Modeling the global effect of the basic-leucine zipper transcription factor 1 (bZIP1) on nitrogen and light regulation in Arabidopsis
Mariana Obertello
,
Gabriel Krouk
,
Manpreet S Katari
,
Suzan J Runko
,
Gloria M Coruzzi
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 806 KB
Vos balises:
english, 2010
41
Systems analysis of iron metabolism: the network of iron pools and fluxes
Tiago JS Lopes
,
Tatyana Luganskaja
,
Maja Vujić Spasić
,
Matthias W Hentze
,
Martina U Muckenthaler
,
Klaus Schümann
,
Jens G Reich
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.33 MB
Vos balises:
english, 2010
42
Optimization strategies for metabolic networks
Alexandre Domingues
,
Susana Vinga
,
João M Lemos
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 654 KB
Vos balises:
english, 2010
43
Validation of a constraint-based model ofPichia pastorismetabolism under data scarcity
Marta Tortajada
,
Francisco Llaneras
,
Jesús Picó
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 514 KB
Vos balises:
english, 2010
44
Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis
Christoph Kaleta
,
Anna Göhler
,
Stefan Schuster
,
Knut Jahreis
,
Reinhard Guthke
,
Swetlana Nikolajewa
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.04 MB
Vos balises:
english, 2010
45
Systems approach to investigating host-pathogen interactions in infections with the biothreat agentFrancisella. Constraints-based model ofFrancisella tularensis
Anu Raghunathan
,
Sookil Shin
,
Simon Daefler
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.36 MB
Vos balises:
english, 2010
46
Ultrasensitive Responses and Specificity in Cell Signaling
Seth Haney
,
Lee Bardwell
,
Qing Nie
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 570 KB
Vos balises:
english, 2010
47
Gene set analysis exploiting the topology of a pathway
Maria Sofia Massa
,
Monica Chiogna
,
Chiara Romualdi
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.96 MB
Vos balises:
english, 2010
48
A systematic investigation ofEscherichia colicentral carbon metabolism in response to superoxide stress
Bin Rui
,
Tie Shen
,
Hong Zhou
,
Jianping Liu
,
Jiusheng Chen
,
Xiaosong Pan
,
Haiyan Liu
,
Jihui Wu
,
Haoran Zheng
,
Yunyu Shi
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 987 KB
Vos balises:
english, 2010
49
Molecular mechanistic associations of human diseases
Philip Stegmaier
,
Mathias Krull
,
Nico Voss
,
Alexander E Kel
,
Edgar Wingender
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 3.97 MB
Vos balises:
english, 2010
50
A yeast's eye view of mammalian reproduction: cross-species gene co-expression in meiotic prophase
Yunfei Li
,
Ka-sum Lam
,
Nairanjana Dasgupta
,
Ping Ye
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.12 MB
Vos balises:
english, 2010
51
Determining and interpreting correlations in lipidomic networks found in glioblastoma cells
Robert Görke
,
Anke Meyer-Bäse
,
Dorothea Wagner
,
Huan He
,
Mark R Emmett
,
Charles A Conrad
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 6.52 MB
Vos balises:
english, 2010
52
Genomic distance entrained clustering and regression modelling highlights interacting genomic regions contributing to proliferation in breast cancer
Tim J Dexter
,
David Sims
,
Costas Mitsopoulos
,
Alan Mackay
,
Anita Grigoriadis
,
Amar S Ahmad
,
Marketa Zvelebil
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.36 MB
Vos balises:
english, 2010
53
Protein complex prediction based onk-connected subgraphs in protein interaction network
Mahnaz Habibi
,
Changiz Eslahchi
,
Limsoon Wong
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.08 MB
Vos balises:
english, 2010
54
Dynamical modeling of microRNA action on the protein translation process
Andrei Zinovyev
,
Nadya Morozova
,
Nora Nonne
,
Emmanuel Barillot
,
Annick Harel-Bellan
,
Alexander N Gorban
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.19 MB
Vos balises:
english, 2010
55
Statistical inference of the time-varying structure of gene-regulation networks
Sophie Lèbre
,
Jennifer Becq
,
Frédéric Devaux
,
Michael PH Stumpf
,
Gaëlle Lelandais
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.76 MB
Vos balises:
english, 2010
56
Modelling biochemical networks with intrinsic time delays: a hybrid semi-parametric approach
Moritz von Stosch
,
Joana Peres
,
Sebastião Feyo de Azevedo
,
Rui Oliveira
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.91 MB
Vos balises:
english, 2010
57
Inferring the conservative causal core of gene regulatory networks
Gökmen Altay
,
Frank Emmert-Streib
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 810 KB
Vos balises:
english, 2010
58
Transformation of metabolism with age and lifestyle in Antarctic seals: a case study of systems biology approach to cross-species microarray experiment
Andrey Ptitsyn
,
Amber Schlater
,
Shane Kanatous
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.10 MB
Vos balises:
english, 2010
59
Single-cell and coupled GRN models of cell patterning in theArabidopsis thalianaroot stem cell niche
Eugenio Azpeitia
,
Mariana Benítez
,
Iliusi Vega
,
Carlos Villarreal
,
Elena R Alvarez-Buylla
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 868 KB
Vos balises:
english, 2010
60
Edelfosine-induced metabolic changes in cancer cells that precede the overproduction of reactive oxygen species and apoptosis
Vitaly A Selivanov
,
Pedro Vizán
,
Faustino Mollinedo
,
Teresa WM Fan
,
Paul WN Lee
,
Marta Cascante
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 877 KB
Vos balises:
english, 2010
61
Analysis of Alzheimer's disease severity across brain regions by topological analysis of gene co-expression networks
Monika Ray
,
Weixiong Zhang
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 373 KB
Vos balises:
english, 2010
62
Signaling network of dendritic cells in response to pathogens: a community-input supported knowledgebase
Sonali Patil
,
Hanna Pincas
,
Jeremy Seto
,
German Nudelman
,
Irina Nudelman
,
Stuart C Sealfon
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 3.37 MB
Vos balises:
english, 2010
63
Dynamic functional modules in co-expressed protein interaction networks of dilated cardiomyopathy
Chen-Ching Lin
,
Jen-Tsung Hsiang
,
Chia-Yi Wu
,
Yen-Jen Oyang
,
Hsueh-Fen Juan
,
Hsuan-Cheng Huang
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 3.17 MB
Vos balises:
english, 2010
64
Hypoxia-dependent sequestration of an oxygen sensor by a widespread structural motif can shape the hypoxic response - a predictive kinetic model
Bernhard Schmierer
,
Béla Novák
,
Christopher J Schofield
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.55 MB
Vos balises:
english, 2010
65
Systems genetics analyses predict a transcription role for P2P-R: Molecular confirmation that P2P-R is a transcriptional co-repressor
Philippos Peidis
,
Thomas Giannakouros
,
Matthew E Burow
,
Robert W Williams
,
Robert E Scott
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 3.25 MB
Vos balises:
english, 2010
66
A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1
Martin I Sigurdsson
,
Neema Jamshidi
,
Eirikur Steingrimsson
,
Ines Thiele
,
Bernhard Ø Palsson
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 675 KB
Vos balises:
english, 2010
67
A multi-level study of recombinantPichia pastorisin different oxygen conditions
Kristin Baumann
,
Marc Carnicer
,
Martin Dragosits
,
Alexandra B Graf
,
Johannes Stadlmann
,
Paula Jouhten
,
Hannu Maaheimo
,
Brigitte Gasser
,
Joan Albiol
,
Diethard Mattanovich
,
Pau Ferrer
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.33 MB
Vos balises:
english, 2010
68
Thermodynamic modeling of transcription: sensitivity analysis differentiates biological mechanism from mathematical model-induced effects
Jacqueline M Dresch
,
Xiaozhou Liu
,
David N Arnosti
,
Ahmet Ay
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 736 KB
Vos balises:
english, 2010
69
Information propagation within the Genetic Network of Saccharomyces cerevisiae
Sharif Chowdhury
,
Jason Lloyd-Price
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Olli-Pekka Smolander
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Wayne CV Baici
,
Timothy R Hughes
,
Olli Yli-Harja
,
Gordon Chua
,
Andre S Ribeiro
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 339 KB
Vos balises:
english, 2010
70
Localizing potentially active post-transcriptional regulations in the Ewing's sarcoma gene regulatory network
Tatiana Baumuratova
,
Didier Surdez
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Bernard Delyon
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Gautier Stoll
,
Olivier Delattre
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Ovidiu Radulescu
,
Anne Siegel
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.13 MB
Vos balises:
english, 2010
71
Regulatory network modelling of iron acquisition by a fungal pathogen in contact with epithelial cells
Jörg Linde
,
Duncan Wilson
,
Bernhard Hube
,
Reinhard Guthke
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 854 KB
Vos balises:
english, 2010
72
The zipper mechanism in phagocytosis: energetic requirements and variability in phagocytic cup shape
Sylvain Tollis
,
Anna E Dart
,
George Tzircotis
,
Robert G Endres
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.63 MB
Vos balises:
english, 2010
73
Minimally perturbing a gene regulatory network to avoid a disease phenotype: the glioma network as a test case
Guy Karlebach
,
Ron Shamir
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.00 MB
Vos balises:
english, 2010
74
Combinatorial regulation of transcription factors and microRNAs
Naifang Su
,
Yufu Wang
,
Minping Qian
,
Minghua Deng
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.17 MB
Vos balises:
english, 2010
75
Multi-level reproducibility of signature hubs in human interactome for breast cancer metastasis
Chen Yao
,
Hongdong Li
,
Chenggui Zhou
,
Lin Zhang
,
Jinfeng Zou
,
Zheng Guo
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 541 KB
Vos balises:
english, 2010
76
Noisy-threshold control of cell death
Jose MG Vilar
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.10 MB
Vos balises:
english, 2010
77
In vitrogene regulatory networks predictin vivofunction of liver
Youping Deng
,
David R Johnson
,
Xin Guan
,
Choo Y Ang
,
Junmei Ai
,
Edward J Perkins
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.46 MB
Vos balises:
english, 2010
78
Patterns of human gene expression variance show strong associations with signaling network hierarchy
Kakajan Komurov
,
Prahlad T Ram
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 894 KB
Vos balises:
english, 2010
79
Protein complex forming ability is favored over the features of interacting partners in determining the evolutionary rates of proteins in the yeast protein-protein interaction networks
Sandip Chakraborty
,
Bratati Kahali
,
Tapash C Ghosh
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 403 KB
Vos balises:
english, 2010
80
Reconstruction and analysis of genome-scale metabolic model of a photosynthetic bacterium
Arnau Montagud
,
Emilio Navarro
,
Pedro Fernández de Córdoba
,
Javier F Urchueguía
,
Kiran Raosaheb Patil
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.55 MB
Vos balises:
english, 2010
81
Modeling cardiac β-adrenergic signaling with normalized-Hill differential equations: comparison with a biochemical model
Matthew J Kraeutler
,
Anthony R Soltis
,
Jeffrey J Saucerman
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.74 MB
Vos balises:
english, 2010
82
A genetic network model of cellular responses to lithium treatment and cocaine abuse in bipolar disorder
Richard C McEachin
,
Haiming Chen
,
Maureen A Sartor
,
Scott F Saccone
,
Benjamin J Keller
,
Alan R Prossin
,
James D Cavalcoli
,
Melvin G McInnis
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 575 KB
Vos balises:
english, 2010
83
Deducing corticotropin-releasing hormone receptor type 1 signaling networks from gene expression data by usage of genetic algorithms and graphical Gaussian models
Dietrich Trümbach
,
Cornelia Graf
,
Benno Pütz
,
Claudia Kühne
,
Marcus Panhuysen
,
Peter Weber
,
Florian Holsboer
,
Wolfgang Wurst
,
Gerhard Welzl
,
Jan M Deussing
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.01 MB
Vos balises:
english, 2010
84
Inferring genetic interactions via a nonlinear model and an optimization algorithm
Chung-Ming Chen
,
Chih Lee
,
Cheng-Long Chuang
,
Chia-Chang Wang
,
Grace S Shieh
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 411 KB
Vos balises:
english, 2010
85
Development and analysis of anin vivo-compatible metabolic network ofMycobacterium tuberculosis
Xin Fang
,
Anders Wallqvist
,
Jaques Reifman
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.15 MB
Vos balises:
english, 2010
86
Confidence from uncertainty - A multi-target drug screening method from robust control theory
Camilla Luni
,
Jason E Shoemaker
,
Kevin R Sanft
,
Linda R Petzold
,
Francis J Doyle
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 757 KB
Vos balises:
english, 2010
87
Regulation patterns in signaling networks of cancer
Gunnar Schramm
,
Nandakumar Kannabiran
,
Rainer König
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.36 MB
Vos balises:
english, 2010
88
Integrated analysis of mutations, miRNA and mRNA expression in glioblastoma
Hua Dong
,
Li Luo
,
Shengjun Hong
,
Hoicheong Siu
,
Yanghua Xiao
,
Li Jin
,
Rui Chen
,
Momiao Xiong
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 3.38 MB
Vos balises:
english, 2010
89
ExprEssence- Revealing the essence of differential experimental data in the context of an interaction/regulation net-work
Gregor Warsow
,
Boris Greber
,
Steffi SI Falk
,
Clemens Harder
,
Marcin Siatkowski
,
Sandra Schordan
,
Anup Som
,
Nicole Endlich
,
Hans Schöler
,
Dirk Repsilber
,
Karlhans Endlich
,
Georg Fuellen
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.04 MB
Vos balises:
english, 2010
90
Diffusive coupling can discriminate between similar reaction mechanisms in an allosteric enzyme system
Ronny Straube
,
Ernesto M Nicola
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 739 KB
Vos balises:
english, 2010
91
Systems biology approach reveals that overflow metabolism of acetate inEscherichia coliis triggered by carbon catabolite repression of acetyl-CoA synthetase
Kaspar Valgepea
,
Kaarel Adamberg
,
Ranno Nahku
,
Petri-Jaan Lahtvee
,
Liisa Arike
,
Raivo Vilu
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 656 KB
Vos balises:
english, 2010
92
Global analysis of phase locking in gene expression during cell cycle: the potential in network modeling
Shouguo Gao
,
John L Hartman
,
Justin L Carter
,
Martin J Hessner
,
Xujing Wang
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 3.17 MB
Vos balises:
english, 2010
93
Cloud computing and validation of expandable in silico livers
Glen EP Ropella
,
C Anthony Hunt
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.65 MB
Vos balises:
english, 2010
94
Defining the antigen receptor-dependent regulatory network that induces arrest of cycling immature B-lymphocytes
Mohammad Sarwar Jamal
,
Srikanth Ravichandran
,
Noor Jailkhani
,
Samrat Chatterjee
,
Raina Dua
,
Kanury VS Rao
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.97 MB
Vos balises:
english, 2010
95
Reverse engineering a gene network using an asynchronous parallel evolution strategy
Luke Jostins
,
Johannes Jaeger
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 668 KB
Vos balises:
english, 2010
96
Inference of hierarchical regulatory network of estrogen-dependent breast cancer through ChIP-based data
Fei Gu
,
Hang-Kai Hsu
,
Pei-Yin Hsu
,
Jiejun Wu
,
Yilin Ma
,
Jeffrey Parvin
,
Tim H-M Huang
,
Victor X Jin
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.39 MB
Vos balises:
english, 2010
97
Robust dynamic balance of AP-1 transcription factors in a neuronal gene regulatory network
Gregory M Miller
,
Babatunde A Ogunnaike
,
James S Schwaber
,
Rajanikanth Vadigepalli
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 868 KB
Vos balises:
english, 2010
98
Features analysis for identification of date and party hubs in protein interaction network ofSaccharomyces Cerevisiae
Mitra Mirzarezaee
,
Babak N Araabi
,
Mehdi Sadeghi
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 309 KB
Vos balises:
english, 2010
99
SVM classifier to predict genes important for self-renewal and pluripotency of mouse embryonic stem cells
Huilei Xu
,
Ihor R Lemischka
,
Avi Ma'ayan
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 627 KB
Vos balises:
english, 2010
100
Constraint-based modeling analysis of the metabolism of twoPelobacterspecies
Jun Sun
,
Shelley A Haveman
,
Olivia Bui
,
Tom R Fahland
,
Derek R Lovley
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 432 KB
Vos balises:
english, 2010
101
Bio-informatics analysis of a gene co-expression module in adipose tissue containing the diet-responsive geneNnat
Xinzhong Li
,
Peter A Thomason
,
Dominic J Withers
,
James Scott
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 576 KB
Vos balises:
english, 2010
102
Targeted protein depletion inSaccharomyces cerevisiaeby activation of a bidirectional degron
Marc Jungbluth
,
Christian Renicke
,
Christof Taxis
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.59 MB
Vos balises:
english, 2010
103
Individual vs. combinatorial effect of elevated CO2conditions and salinity stress onArabidopsis thalianaliquid cultures: Comparing the early molecular response using time-series transcriptomic and metabolomic analyses
Harin Kanani
,
Bhaskar Dutta
,
Maria I Klapa
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 4.29 MB
Vos balises:
english, 2010
104
Improving theiMM904S. cerevisiaemetabolic model using essentiality and synthetic lethality data
Ali R Zomorrodi
,
Costas D Maranas
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.15 MB
Vos balises:
english, 2010
105
Understanding protein evolutionary rate by integrating gene co-expression with protein interactions
Kaifang Pang
,
Chao Cheng
,
Zhenyu Xuan
,
Huanye Sheng
,
Xiaotu Ma
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.79 MB
Vos balises:
english, 2010
106
Statistical model comparison applied to common network motifs
Núria Domedel-Puig
,
Iosifina Pournara
,
Lorenz Wernisch
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 991 KB
Vos balises:
english, 2010
107
Probability distributed time delays: integrating spatial effects into temporal models
Tatiana T Marquez-Lago
,
André Leier
,
Kevin Burrage
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 866 KB
Vos balises:
english, 2010
108
On the spontaneous stochastic dynamics of a single gene: complexity of the molecular interplay at the promoter
Antoine Coulon
,
Olivier Gandrillon
,
Guillaume Beslon
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.56 MB
Vos balises:
english, 2010
109
Integrated cellular network of transcription regulations and protein-protein interactions
Yu-Chao Wang
,
Bor-Sen Chen
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.49 MB
Vos balises:
english, 2010
110
Parameter estimation and inference for stochastic reaction-diffusion systems: application to morphogenesis in D. melanogaster
Michael A Dewar
,
Visakan Kadirkamanathan
,
Manfred Opper
,
Guido Sanguinetti
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 735 KB
Vos balises:
english, 2010
111
So what do we really mean when we say that systems biology isholistic?
Derek Gatherer
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 308 KB
Vos balises:
english, 2010
112
Two additive mechanisms impair the differentiation of 'substrate-selective' p38 inhibitors from classical p38 inhibitors in vitro
Bart S Hendriks
,
Kelly M Seidl
,
Jeffrey R Chabot
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.31 MB
Vos balises:
english, 2010
113
Meredys, a multi-compartment reaction-diffusion simulator using multistate realistic molecular complexes
Dominic P Tolle
,
Nicolas Le Novère
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.56 MB
Vos balises:
english, 2010
114
Brownian diffusion of AMPA receptors is sufficient to explain fast onset of LTP
Dominic P Tolle
,
Nicolas Le Novère
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.09 MB
Vos balises:
english, 2010
115
The internal state of medium spiny neurons varies in response to different input signals
Zhen Qi
,
Gary W Miller
,
Eberhard O Voit
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.17 MB
Vos balises:
english, 2010
116
Zooming of states and parameters using a lumping approach including back-translation
Mikael Sunnåker
,
Henning Schmidt
,
Mats Jirstrand
,
Gunnar Cedersund
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.96 MB
Vos balises:
english, 2010
117
A novel approach to investigate tissue-specific trinucleotide repeat instability
Jong-Min Lee
,
Jie Zhang
,
Andrew I Su
,
John R Walker
,
Tim Wiltshire
,
Kihwa Kang
,
Ella Dragileva
,
Tammy Gillis
,
Edith T Lopez
,
Marie-Josee Boily
,
Michel Cyr
,
Isaac Kohane
,
James F Gusella
,
Marcy E MacDo
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.36 MB
Vos balises:
english, 2010
118
Deciphering chemotaxis pathways using cross species comparisons
Rebecca Hamer
,
Pao-Yang Chen
,
Judith P Armitage
,
Gesine Reinert
,
Charlotte M Deane
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.08 MB
Vos balises:
english, 2010
119
Genotype networks in metabolic reaction spaces
Areejit Samal
,
João F Matias Rodrigues
,
Jürgen Jost
,
Olivier C Martin
,
Andreas Wagner
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.37 MB
Vos balises:
english, 2010
120
Genome-scale metabolic analysis ofClostridium thermocellumfor bioethanol production
Seth B Roberts
,
Christopher M Gowen
,
J Paul Brooks
,
Stephen S Fong
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.31 MB
Vos balises:
english, 2010
121
Linking toxicant physiological mode of action with induced gene expression changes inCaenorhabditis elegans
Suresh Swain
,
Jodie F Wren
,
Stephen R Stürzenbaum
,
Peter Kille
,
A John Morgan
,
Tjalling Jager
,
Martijs J Jonker
,
Peter K Hankard
,
Claus Svendsen
,
Jenifer Owen
,
B Ann Hedley
,
Mark Blaxter
,
David J Spur
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.40 MB
Vos balises:
english, 2010
122
Stochastic and deterministic multiscale models for systems biology: an auxin-transport case study
Jamie Twycross
,
Leah R Band
,
Malcolm J Bennett
,
John R King
,
Natalio Krasnogor
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 703 KB
Vos balises:
english, 2010
123
Prediction of novel synthetic pathways for the production of desired chemicals
Ayoun Cho
,
Hongseok Yun
,
Jin Hwan Park
,
Sang Yup Lee
,
Sunwon Park
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.64 MB
Vos balises:
english, 2010
124
Building and analyzing protein interactome networks by cross-species comparisons
Amy M Wiles
,
Mark Doderer
,
Jianhua Ruan
,
Ting-Ting Gu
,
Dashnamoorthy Ravi
,
Barron Blackman
,
Alexander JR Bishop
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.10 MB
Vos balises:
english, 2010
125
An integrated machine learning approach for predicting DosR-regulated genes in Mycobacterium tuberculosis
Yi Zhang
,
Kim A Hatch
,
Joanna Bacon
,
Lorenz Wernisch
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 866 KB
Vos balises:
english, 2010
126
Time-dependent structural transformation analysis to high-level Petri net model with active state transition diagram
Chen Li
,
Masao Nagasaki
,
Ayumu Saito
,
Satoru Miyano
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.78 MB
Vos balises:
english, 2010
127
Searching for functional gene modules with interaction component models
Juuso A Parkkinen
,
Samuel Kaski
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1002 KB
Vos balises:
english, 2010
128
Stochastic Modeling of B Lymphocyte Terminal Differentiation and Its Suppression by Dioxin
Qiang Zhang
,
Sudin Bhattacharya
,
Douglas E Kline
,
Robert B Crawford
,
Rory B Conolly
,
Russell S Thomas
,
Norbert E Kaminski
,
Melvin E Andersen
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.76 MB
Vos balises:
english, 2010
129
Integrated network analysis of transcriptomic and proteomic data in psoriasis
Eleonora Piruzian
,
Sergey Bruskin
,
Alex Ishkin
,
Rustam Abdeev
,
Sergey Moshkovskii
,
Stanislav Melnik
,
Yuri Nikolsky
,
Tatiana Nikolskaya
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.60 MB
Vos balises:
english, 2010
130
Solving the chemical master equation using sliding windows
Verena Wolf
,
Rushil Goel
,
Maria Mateescu
,
Thomas A Henzinger
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.77 MB
Vos balises:
english, 2010
131
Low-complexity regions within protein sequences have position-dependent roles
Alain Coletta
,
John W Pinney
,
David Y Weiss Solís
,
James Marsh
,
Steve R Pettifer
,
Teresa K Attwood
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 775 KB
Vos balises:
english, 2010
132
The proteins of intra-nuclear bodies: a data-driven analysis of sequence, interaction and expression
Nurul Mohamad
,
Mikael Bodén
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 578 KB
Vos balises:
english, 2010
133
OptFlux: an open-source software platform forin silicometabolic engineering
Isabel Rocha
,
Paulo Maia
,
Pedro Evangelista
,
Paulo Vilaça
,
Simão Soares
,
José P Pinto
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Jens Nielsen
,
Kiran R Patil
,
Eugénio C Ferreira
,
Miguel Rocha
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.59 MB
Vos balises:
english, 2010
134
Quantitative global studies of reactomes and metabolomes using a vectorial representation of reactions and chemical compounds
Juan C Triviño
,
Florencio Pazos
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1003 KB
Vos balises:
english, 2010
135
Identification of responsive gene modules by network-based gene clustering and extending: application to inflammation and angiogenesis
Jin Gu
,
Yang Chen
,
Shao Li
,
Yanda Li
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 3.94 MB
Vos balises:
english, 2010
136
Robust dynamical pattern formation from a multifunctional minimal genetic circuit
Guillermo Rodrigo
,
Javier Carrera
,
Santiago F Elena
,
Alfonso Jaramillo
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.55 MB
Vos balises:
english, 2010
137
Utilizing elementary mode analysis, pathway thermodynamics, and a genetic algorithm for metabolic flux determination and optimal metabolic network design
Brett A Boghigian
,
Hai Shi
,
Kyongbum Lee
,
Blaine A Pfeifer
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.01 MB
Vos balises:
english, 2010
138
Blood flow controls coagulation onset via the positive feedback of factor VII activation by factor Xa
Alexey M Shibeko
,
Ekaterina S Lobanova
,
Mikhail A Panteleev
,
Fazoil I Ataullakhanov
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.09 MB
Vos balises:
english, 2010
139
Identifying mRNA targets of microRNA dysregulated in cancer: with application to clear cell Renal Cell Carcinoma
Huiqing Liu
,
Angela R Brannon
,
Anupama R Reddy
,
Gabriela Alexe
,
Michael W Seiler
,
Alexandra Arreola
,
Jay H Oza
,
Ming Yao
,
David Juan
,
Louis S Liou
,
Shridar Ganesan
,
Arnold J Levine
,
WK Rathmell
,
Gyan
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.12 MB
Vos balises:
english, 2010
140
The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis
Matteo Brilli
,
Marco Fondi
,
Renato Fani
,
Alessio Mengoni
,
Lorenzo Ferri
,
Marco Bazzicalupo
,
Emanuele G Biondi
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 3.58 MB
Vos balises:
english, 2010
141
OptORF: Optimal metabolic and regulatory perturbations for metabolic engineering of microbial strains
Joonhoon Kim
,
Jennifer L Reed
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.71 MB
Vos balises:
english, 2010
142
Dynamics and Control of the Central Carbon Metabolism in Hepatoma Cells
Klaus Maier
,
Ute Hofmann
,
Matthias Reuss
,
Klaus Mauch
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.73 MB
Vos balises:
english, 2010
143
Experimental and computational validation of models of fluorescent and luminescent reporter genes in bacteria
Hidde de Jong
,
Caroline Ranquet
,
Delphine Ropers
,
Corinne Pinel
,
Johannes Geiselmann
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 986 KB
Vos balises:
english, 2010
144
Identifying essential genes in bacterial metabolic networks with machine learning methods
Kitiporn Plaimas
,
Roland Eils
,
Rainer König
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 852 KB
Vos balises:
english, 2010
145
Catabolic efficiency of aerobic glycolysis: The Warburg effect revisited
Alexei Vazquez
,
Jiangxia Liu
,
Yi Zhou
,
Zoltán N Oltvai
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.20 MB
Vos balises:
english, 2010
146
Towards a genome-scale kinetic model of cellular metabolism
Kieran Smallbone
,
Evangelos Simeonidis
,
Neil Swainston
,
Pedro Mendes
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 414 KB
Vos balises:
english, 2010
147
Coordinated modular functionality and prognostic potential of a heart failure biomarker-driven interaction network
Francisco Azuaje
,
Yvan Devaux
,
Daniel R Wagner
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.45 MB
Vos balises:
english, 2010
148
Metabolic effects of influenza virus infection in cultured animal cells: Intra- and extracellular metabolite profiling
Joachim B Ritter
,
Aljoscha S Wahl
,
Susann Freund
,
Yvonne Genzel
,
Udo Reichl
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.51 MB
Vos balises:
english, 2010
149
Construction of a large scale integrated map of macrophage pathogen recognition and effector systems
Sobia Raza
,
Neil McDerment
,
Paul A Lacaze
,
Kevin Robertson
,
Steven Watterson
,
Ying Chen
,
Michael Chisholm
,
George Eleftheriadis
,
Stephanie Monk
,
Maire O'Sullivan
,
Arran Turnbull
,
Douglas Roy
,
Athanasi
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 6.20 MB
Vos balises:
english, 2010
150
Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis
Marc T Facciotti
,
Wyming L Pang
,
Fang-yin Lo
,
Kenia Whitehead
,
Tie Koide
,
Ken-ichi Masumura
,
Min Pan
,
Amardeep Kaur
,
David J Larsen
,
David J Reiss
,
Linh Hoang
,
Ewa Kalisiak
,
Trent Northen
,
Sunia A Tra
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.20 MB
Vos balises:
english, 2010
151
Avoiding transcription factor competition at promoter level increases the chances of obtaining oscillation
Andreea Munteanu
,
Marco Constante
,
Mark Isalan
,
Ricard V Solé
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 3.86 MB
Vos balises:
english, 2010
152
An integrative multi-dimensional genetic and epigenetic strategy to identify aberrant genes and pathways in cancer
Raj Chari
,
Bradley P Coe
,
Emily A Vucic
,
William W Lockwood
,
Wan L Lam
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.67 MB
Vos balises:
english, 2010
153
Set-base dynamical parameter estimation and model invalidation for biochemical reaction networks
Philipp Rumschinski
,
Steffen Borchers
,
Sandro Bosio
,
Robert Weismantel
,
Rolf Findeisen
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.16 MB
Vos balises:
english, 2010
154
In silico feasibility of novel biodegradation pathways for 1,2,4-trichlorobenzene
Stacey D Finley
,
Linda J Broadbelt
,
Vassily Hatzimanikatis
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 570 KB
Vos balises:
english, 2010
155
Inferring the physical connectivity of complex networks from their functional dynamics
Hung Xuan Ta
,
Chang No Yoon
,
Liisa Holm
,
Seung Kee Han
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.49 MB
Vos balises:
english, 2010
156
An information-flow-based model with dissipation, saturation and direction for active pathway inference
Xianwen Ren
,
Xiaobo Zhou
,
Ling-Yun Wu
,
Xiang-Sun Zhang
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 957 KB
Vos balises:
english, 2010
157
Integration of transcriptional inputs at promoters of the arabinose catabolic pathway
Carla J Davidson
,
Atul Narang
,
Michael G Surette
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.41 MB
Vos balises:
english, 2010
158
A multilevel data integration resource for breast cancer study
Ettore Mosca
,
Roberta Alfieri
,
Ivan Merelli
,
Federica Viti
,
Andrea Calabria
,
Luciano Milanesi
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.99 MB
Vos balises:
english, 2010
159
Network properties of human disease genes with pleiotropic effects
Sreenivas Chavali
,
Fredrik Barrenas
,
Kartiek Kanduri
,
Mikael Benson
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.56 MB
Vos balises:
english, 2010
160
Hybrid modeling of biological networks: mixing temporal and qualitative biological properties
Jonathan Fromentin
,
Damien Eveillard
,
Olivier Roux
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 700 KB
Vos balises:
english, 2010
161
A general co-expression network-based approach to gene expression analysis: comparison and applications
Jianhua Ruan
,
Angela K Dean
,
Weixiong Zhang
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.42 MB
Vos balises:
english, 2010
162
A circuit model of the temporal pattern generator ofCaenorhabditisegg-laying behavior
Mi Zhang
,
William R Schafer
,
Rainer Breitling
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 855 KB
Vos balises:
english, 2010
163
Composite functional module inference: detecting cooperation between transcriptional regulation and protein interaction by mantel test
Chao Wu
,
Fan Zhang
,
Xia Li
,
Shihua Zhang
,
Jiang Li
,
Fei Su
,
Kongning Li
,
Yuqing Yan
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.99 MB
Vos balises:
english, 2010
164
Protein interaction network topology uncovers melanogenesis regulatory network components within functional genomics datasets
Hsiang Ho
,
Tijana Milenković
,
Vesna Memišević
,
Jayavani Aruri
,
Nataša Pržulj
,
Anand K Ganesan
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.38 MB
Vos balises:
english, 2010
165
The spermatozoa caught in the net: the biological networks to study the male gametes post-ejaculatory life
Nicola Bernabò
,
Mauro Mattioli
,
Barbara Barboni
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.19 MB
Vos balises:
english, 2010
166
Robustness from flexibility in the fungal circadian clock
Ozgur E Akman
,
David A Rand
,
Paul E Brown
,
Andrew J Millar
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.25 MB
Vos balises:
english, 2010
167
microRNA evolution in a human transcription factor and microRNA regulatory network
Chengxiang Qiu
,
Juan Wang
,
Pengying Yao
,
Edwin Wang
,
Qinghua Cui
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 633 KB
Vos balises:
english, 2010
168
Functional network of glycan-related molecules: Glyco-Net in Glycoconjugate Data Bank
Ryo Hashimoto
,
Kazuko Hirose
,
Taku Sato
,
Nobuhiro Fukushima
,
Nobuaki Miura
,
Shin-Ichiro Nishimura
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 586 KB
Vos balises:
english, 2010
169
The role of noise and positive feedback in the onset of autosomal dominant diseases
William J Bosl
,
Rong Li
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.22 MB
Vos balises:
english, 2010
170
Stress-specific response of the p53-Mdm2 feedback loop
Alexander Hunziker
,
Mogens H Jensen
,
Sandeep Krishna
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 722 KB
Vos balises:
english, 2010
171
Identifying potential survival strategies of HIV-1 through virus-host protein interaction networks
David van Dijk
,
Gokhan Ertaylan
,
Charles AB Boucher
,
Peter MA Sloot
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 4.17 MB
Vos balises:
english, 2010
172
Evaluating diabetes and hypertension disease causality using mouse phenotypes
Hong Yu
,
Jialiang Huang
,
Nan Qiao
,
Christopher D Green
,
Jing-Dong J Han
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 844 KB
Vos balises:
english, 2010
173
A plausible mechanism for auxin patterning along the developing root
Victoria V Mironova
,
Nadezda A Omelyanchuk
,
Guy Yosiphon
,
Stanislav I Fadeev
,
Nikolai A Kolchanov
,
Eric Mjolsness
,
Vitaly A Likhoshvai
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 2.06 MB
Vos balises:
english, 2010
174
Parameter inference for discretely observed stochastic kinetic models using stochastic gradient descent
Yuanfeng Wang
,
Scott Christley
,
Eric Mjolsness
,
Xiaohui Xie
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 571 KB
Vos balises:
english, 2010
175
Quantifying uncertainty, variability and likelihood for ordinary differential equation models
Andrea Y Weiße
,
Richard H Middleton
,
Wilhelm Huisinga
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.11 MB
Vos balises:
english, 2010
176
Spatio-temporal modeling of signaling protein recruitment to EGFR
Ming-yu Hsieh
,
Shujie Yang
,
Mary Ann Raymond-Stinz
,
Jeremy S Edwards
,
Bridget S Wilson
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 3.01 MB
Vos balises:
english, 2010
177
Integrative analysis of large scale expression profiles reveals core transcriptional response and coordination between multiple cellular processes in a cyanobacterium
Abhay K Singh
,
Thanura Elvitigala
,
Jeffrey C Cameron
,
Bijoy K Ghosh
,
Maitrayee Bhattacharyya-Pakrasi
,
Himadri B Pakrasi
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 1.28 MB
Vos balises:
english, 2010
178
Prediction of quantitative phenotypes based on genetic networks: a case study in yeast sporulation
Li Shen
,
Iouri Chepelev
,
Jie Liu
,
Wei Wang
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 558 KB
Vos balises:
english, 2010
179
Further developments towards a genome-scale metabolic model of yeast
Paul D Dobson
,
Kieran Smallbone
,
Daniel Jameson
,
Evangelos Simeonidis
,
Karin Lanthaler
,
Pınar Pir
,
Chuan Lu
,
Neil Swainston
,
Warwick B Dunn
,
Paul Fisher
,
Duncan Hull
,
Marie Brown
,
Olusegun Oshota
,
Nat
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 597 KB
Vos balises:
english, 2010
180
The protein kinase Mζ network as a bistable switch to store neuronal memory
Ogasawara, Hideaki
,
Kawato, Mitsuo
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 654 KB
Vos balises:
english, 2010
181
Integrated functional networks of process, tissue, and developmental stage specific interactions inArabidopsis thaliana
Pop, Ana
,
Huttenhower, Curtis
,
Iyer-Pascuzzi, Anjali
,
Benfey, Philip N
,
Troyanskaya, Olga G
Journal:
BMC Systems Biology
Année:
2010
Langue:
english
Fichier:
PDF, 826 KB
Vos balises:
english, 2010
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