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Volume 12; Issue 1

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BMC Genomics
Volume 12; Issue 1

BMC Genomics

Volume 12; Issue 1

1

Venom gland transcriptomes of two elapid snakes (Bungarus multicinctusandNaja atra) and evolution of toxin genes

Yu Jiang, Yan Li, Wenhui Lee, Xun Xu, Yue Zhang, Ruoping Zhao, Yun Zhang, Wen Wang

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.66 MB

english, 2011

2

Systematic evaluation of genome-wide methylated DNA enrichment using a CpG island array

Liu Yang, Kunlin Zhang, Wei Dai, Ximiao He, Qian Zhao, Jing Wang, Zhong Sheng Sun

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.30 MB

english, 2011

3

Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (DioscoreaalataL.)

Satya S Narina, Ramesh Buyyarapu, Kameswara Rao Kottapalli, Alieu M Sartie, Mohamed I Ali, Asiedu Robert, Mignouna JD Hodeba, Brian L Sayre, Brian E Scheffler

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 860 KB

english, 2011

4

Responsiveness of genes to manipulation of transcription factors in ES cells is associated with histone modifications and tissue specificity

Alexei A Sharov, Akira Nishiyama, Yulan Piao, Lina S Correa-Cerro, Tomokazu Amano, Marshall Thomas, Samir Mehta, Minoru SH Ko

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 864 KB

english, 2011

5

Whole-genome resequencing shows numerous genes with nonsynonymous SNPs in the Japanese native cattleKuchinoshima-Ushi

Ryouka Kawahara-Miki, Kaoru Tsuda, Yuh Shiwa, Yuko Arai-Kichise, Takashi Matsumoto, Yu Kanesaki, Sen-ichi Oda, Shizufumi Ebihara, Shunsuke Yajima, Hirofumi Yoshikawa, Tomohiro Kono

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 578 KB

english, 2011

6

Transcriptome characterization and high throughput SSRs and SNPs discovery inCucurbita pepo(Cucurbitaceae)

José Blanca, Joaquín Cañizares, Cristina Roig, Pello Ziarsolo, Fernando Nuez, Belén Picó

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1019 KB

english, 2011

7

Functional genomics of the horn fly,Haematobia irritans(Linnaeus, 1758)

Lorena Torres, Consuelo Almazán, Nieves Ayllón, Ruth C Galindo, Rodrigo Rosario-Cruz, Héctor Quiroz-Romero, José de la Fuente

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 960 KB

english, 2011

8

Identification of errors introduced during high throughput sequencing of the T cell receptor repertoire

Phuong Nguyen, Jing Ma, Deqing Pei, Caroline Obert, Cheng Cheng, Terrence L Geiger

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.57 MB

english, 2011

9

The genetic interaction network ofCCW12, aSaccharomyces cerevisiaegene required for cell wall integrity during budding and formation of mating projections

Enrico Ragni, Heidi Piberger, Christine Neupert, Jesús García-Cantalejo, Laura Popolo, Javier Arroyo, Markus Aebi, Sabine Strahl

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.42 MB

english, 2011

10

Characterization of statistical features for plant microRNA prediction

Vivek Thakur, Samart Wanchana, Mercedes Xu, Richard Bruskiewich, William Paul Quick, Axel Mosig, Xin-Guang Zhu

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 313 KB

english, 2011

11

Multi-genome identification and characterization of chlamydiae-specific type III secretion substrates: the Inc proteins

Pierre Dehoux, Rhonda Flores, Catherine Dauga, Guangming Zhong, Agathe Subtil

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.66 MB

english, 2011

12

TheSOX2response program in glioblastoma multiforme: an integrated ChIP-seq, expression microarray, and microRNA analysis

Xuefeng Fang, Jae-Geun Yoon, Lisha Li, Wei Yu, Jiaofang Shao, Dasong Hua, Shu Zheng, Leroy Hood, David R Goodlett, Gregory Foltz, Biaoyang Lin

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.87 MB

english, 2011

13

Strain-specific copy number variation in the intelectin locus on the 129 mouse chromosome 1

Zen H Lu, Alex di Domenico, Steven H Wright, Pamela A Knight, C Bruce A Whitelaw, Alan D Pemberton

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.40 MB

english, 2011

14

Microarray profiling for differential gene expression in PMSG-hCG stimulated preovulatory ovarian follicles of Chinese Taihu and Large White sows

Xiaojie Sun, Shuqi Mei, Hu Tao, Guodong Wang, Lina Su, Siwen Jiang, Changyan Deng, Yuanzhu Xiong, Fenge Li

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 984 KB

english, 2011

15

Identification of differentially expressed genes in chickens differing in muscle glycogen content and meat quality

Vonick Sibut, Christelle Hennequet-Antier, Elisabeth Le Bihan-Duval, Sylvain Marthey, Michel J Duclos, Cécile Berri

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 562 KB

english, 2011

16

Meta-analysis of muscle transcriptome data using the MADMuscle database reveals biologically relevant gene patterns

Daniel Baron, Emeric Dubois, Audrey Bihouée, Raluca Teusan, Marja Steenman, Philippe Jourdon, Armelle Magot, Yann Péréon, Reiner Veitia, Frédérique Savagner, Gérard Ramstein, Rémi Houlgatte

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.57 MB

english, 2011

17

Mycoplasma mycoides, from "mycoides Small Colony" to "capri". A microevolutionary perspective

Francois Thiaucourt, Lucia Manso-Silvan, Woubit Salah, Valérie Barbe, Benoit Vacherie, Daniel Jacob, Marc Breton, Virginie Dupuy, Anne Marie Lomenech, Alain Blanchard, Pascal Sirand-Pugnet

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 732 KB

english, 2011

18

The living microarray: a high-throughput platform for measuring transcription dynamics in single cells

Saravanan Rajan, Haig Djambazian, Huan Chu Pham Dang, Rob Sladek, Thomas J Hudson

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 4.14 MB

english, 2011

19

High-throughput 454 resequencing for allele discovery and recombination mapping inPlasmodium falciparum

Upeka Samarakoon, Allison Regier, Asako Tan, Brian A Desany, Brendan Collins, John C Tan, Scott J Emrich, Michael T Ferdig

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.12 MB

english, 2011

20

Advancing the STMS genomic resources for defining new locations on the intraspecific genetic linkage map of chickpea (Cicer arietinumL.)

Rashmi Gaur, Niroj K Sethy, Shalu Choudhary, Bhumika Shokeen, Varsha Gupta, Sabhyata Bhatia

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.08 MB

english, 2011

21

Applicability of RNA standards for evaluating RT-qPCR assays and platforms

Alison S Devonshire, Ramnath Elaswarapu, Carole A Foy

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.58 MB

english, 2011

22

RSpred, a set of Hidden Markov Models to detect and classify the RIFIN and STEVOR proteins ofPlasmodium falciparum

Nicolas Joannin, Yvonne Kallberg, Mats Wahlgren, Bengt Persson

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 891 KB

english, 2011

23

Mesenteric lymph node transcriptome profiles in BALB/c mice sensitized to three common food allergens

Mainul Husain, Herman J Boermans, Niel A Karrow

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 788 KB

english, 2011

24

Identification, variation and transcription of pneumococcal repeat sequences

Nicholas J Croucher, Georgios S Vernikos, Julian Parkhill, Stephen D Bentley

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.62 MB

english, 2011

25

TRAM (Transcriptome Mapper): database-driven creation and analysis of transcriptome maps from multiple sources

Luca Lenzi, Federica Facchin, Francesco Piva, Matteo Giulietti, Maria Chiara Pelleri, Flavia Frabetti, Lorenza Vitale, Raffaella Casadei, Silvia Canaider, Stefania Bortoluzzi, Alessandro Coppe, Gian A

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.56 MB

english, 2011

26

Distinct colonization patterns and cDNA-AFLP transcriptome profiles in compatible and incompatible interactions between melon and different races ofFusarium oxysporumf. sp.melonis

Sara Sestili, Annalisa Polverari, Laura Luongo, Alberto Ferrarini, Michele Scotton, Jamshaid Hussain, Massimo Delledonne, Nadia Ficcadenti, Alessandra Belisario

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.13 MB

english, 2011

27

Comparative tissue transcriptomics reveal prompt inter-organ communication in response to local bacterial kidney infection

Jorrit Boekel, Örjan Källskog, Monica Rydén-Aulin, Mikael Rhen, Agneta Richter-Dahlfors

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.46 MB

english, 2011

28

Alteration of gene expression by alcohol exposure at early neurulation

Feng C Zhou, Qianqian Zhao, Yunlong Liu, Charles R Goodlett, Tiebing Liang, Jeanette N McClintick, Howard J Edenberg, Lang Li

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 4.07 MB

english, 2011

29

Consistency of gene starts amongBurkholderiagenomes

John Dunbar, Judith D Cohn, Michael E Wall

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.46 MB

english, 2011

30

Investigation of the human pathogenAcinetobacter baumanniiunder iron limiting conditions

Bart A Eijkelkamp, Karl A Hassan, Ian T Paulsen, Melissa H Brown

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.76 MB

english, 2011

31

Genomic characteristics of cattle copy number variations

Yali Hou, George E Liu, Derek M Bickhart, Maria Francesca Cardone, Kai Wang, Eui-soo Kim, Lakshmi K Matukumalli, Mario Ventura, Jiuzhou Song, Paul M VanRaden, Tad S Sonstegard, Curt P Van Tassell

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 779 KB

english, 2011

32

Expression profile analysis of the inflammatory response regulated by hepatocyte nuclear factor 4α

Zhongyan Wang, Eric P Bishop, Peter A Burke

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.11 MB

english, 2011

33

Discovery of barley miRNAs through deep sequencing of short reads

Andreas W Schreiber, Bu-Jun Shi, Chun-Yuan Huang, Peter Langridge, Ute Baumann

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.39 MB

english, 2011

34

ZNF280BYandZNF280AY: autosome derived Y-chromosome gene families inBovidae

Yang Yang, Ti-Cheng Chang, Hiroshi Yasue, Arvind K Bharti, Ernest F Retzel, Wan-Sheng Liu

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.72 MB

english, 2011

35

In depth analysis of genes and pathways of the mammary gland involved in the pathogenesis of bovineEscherichia coli-mastitis

Bart Buitenhuis, Christine M Røntved, Stefan M Edwards, Klaus L Ingvartsen, Peter Sørensen

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 253 KB

english, 2011

36

Deep sequencing of theCamellia sinensistranscriptome revealed candidate genes for major metabolic pathways of tea-specific compounds

Cheng-Ying Shi, Hua Yang, Chao-Ling Wei, Oliver Yu, Zheng-Zhu Zhang, Chang-Jun Jiang, Jun Sun, Ye-Yun Li, Qi Chen, Tao Xia, Xiao-Chun Wan

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.95 MB

english, 2011

37

Gene expression throughout a vertebrate's embryogenesis

Goran Bozinovic, Tim L Sit, David E Hinton, Marjorie F Oleksiak

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.75 MB

english, 2011

38

ChIP-chip versus ChIP-seq: Lessons for experimental design and data analysis

Joshua WK Ho, Eric Bishop, Peter V Karchenko, Nicolas Nègre, Kevin P White, Peter J Park

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 701 KB

english, 2011

39

A further insight into the sialome of the tropical bont tick,Amblyomma variegatum

José MC Ribeiro, Jennifer M Anderson, Nicholas C Manoukis, Zhaojing Meng, Ivo MB Francischetti

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.01 MB

english, 2011

40

AdvancingEucalyptusgenomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries

Jorge AP Paiva, Elisa Prat, Sonia Vautrin, Mauro D Santos, Hélène San-Clemente, Sérgio Brommonschenkel, Paulo GS Fonseca, Dario Grattapaglia, Xiang Song, Jetty SS Ammiraju, David Kudrna, Rod A Wing, A

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.45 MB

english, 2011

41

Identification of microRNA-mRNA modules using microarray data

Vivek Jayaswal, Mark Lutherborrow, David DF Ma, Yee H Yang

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 811 KB

english, 2011

42

Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies inTrypanosoma cruzistrains revealed by array comparative genomic hybridization

Todd A Minning, D Brent Weatherly, Stephane Flibotte, Rick L Tarleton

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.45 MB

english, 2011

43

Expression of G protein-coupled receptors and related proteins in HEK293, AtT20, BV2, and N18 cell lines as revealed by microarray analysis

Brady K Atwood, Jacqueline Lopez, James Wager-Miller, Ken Mackie, Alex Straiker

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.95 MB

english, 2011

44

Genome wide analysis of the bovine mucin genes and their gastrointestinal transcription profile

Prisca R Hoorens, Manuela Rinaldi, Robert W Li, Bruno Goddeeris, Edwin Claerebout, Jozef Vercruysse, Peter Geldhof

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 749 KB

english, 2011

45

Gene expression analyses of immune responses in Atlantic salmon during early stages of infection by salmon louse (Lepeophtheirus salmonis) revealed bi-phasic responses coinciding with the copepod-chalimus transition

Tariku Markos Tadiso, Aleksei Krasnov, Stanko Skugor, Sergey Afanasyev, Ivar Hordvik, Frank Nilsen

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.11 MB

english, 2011

46

Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis

Zhixi Tian, Yanjun Yu, Feng Lin, Yeisoo Yu, Phillip J SanMiguel, Rod A Wing, Susan R McCouch, Jianxin Ma, Scott A Jackson

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 536 KB

english, 2011

47

Transcriptional profiling identifies differentially expressed genes in developing turkey skeletal muscle

Kelly RB Sporer, Robert J Tempelman, Catherine W Ernst, Kent M Reed, Sandra G Velleman, Gale M Strasburg

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1006 KB

english, 2011

48

Quantitative miRNA Expression Analysis Using Fluidigm Microfluidics Dynamic Arrays

Jin Sung Jang, Vernadette A Simon, Rod M Feddersen, Fariborz Rakhshan, Debra A Schultz, Michael A Zschunke, Wilma L Lingle, Christopher P Kolbert, Jin Jen

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 483 KB

english, 2011

49

QTL mapping in white spruce: gene maps and genomic regions underlying adaptive traits across pedigrees, years and environments

Betty Pelgas, Jean Bousquet, Patrick G Meirmans, Kermit Ritland, Nathalie Isabel

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.92 MB

english, 2011

50

Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper

Neha Potnis, Ksenia Krasileva, Virginia Chow, Nalvo F Almeida, Prabhu B Patil, Robert P Ryan, Molly Sharlach, Franklin Behlau, J Max Dow, MT Momol, Frank F White, James F Preston, Boris A Vinatzer, Ra

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.14 MB

english, 2011

51

Moult cycle specific differential gene expression profiling of the crabPortunus pelagicus

Anna V Kuballa, Timothy A Holton, Brian Paterson, Abigail Elizur

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.85 MB

english, 2011

52

Transcriptome sequencing and annotation of the microalgaeDunaliella tertiolecta: Pathway description and gene discovery for production of next-generation biofuels

Hamid Rismani-Yazdi, Berat Z Haznedaroglu, Kyle Bibby, Jordan Peccia

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.56 MB

english, 2011

53

Genome-wide temporal-spatial gene expression profiling of drought responsiveness in rice

Di Wang, Yajiao Pan, Xiuqin Zhao, Linghua Zhu, Binying Fu, Zhikang Li

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 360 KB

english, 2011

54

Genome structure of cotton revealed by a genome-wide SSR genetic map constructed from a BC1population betweengossypium hirsutumandG. barbadense

Yu Yu, Daojun Yuan, Shaoguang Liang, Ximei Li, Xiaqing Wang, Zhongxu Lin, Xianlong Zhang

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 501 KB

english, 2011

55

Sequential analysis of global gene expression profiles in immature andin vitromatured bovine oocytes: potential molecular markers of oocyte maturation

Solomon Mamo, Fiona Carter, Patrick Lonergan, Cláudia LV Leal, Abdullah Al Naib, Paul McGettigan, Jai P Mehta, Alexander CO Evans, Trudee Fair

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 475 KB

english, 2011

56

Cross species comparison of C/EBPα and PPARγ profiles in mouse and human adipocytes reveals interdependent retention of binding sites

Søren F Schmidt, Mette Jørgensen, Yun Chen, Ronni Nielsen, Albin Sandelin, Susanne Mandrup

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1012 KB

english, 2011

57

Rhythms and synchronization patterns in gene expression in theAedes aegyptimosquito

Andrey A Ptitsyn, Guadalupe Reyes-Solis, Karla Saavedra-Rodriguez, Jonathan Betz, Erica L Suchman, Jonathan O Carlson, William C Black

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.08 MB

english, 2011

58

Identification and characterization of maize microRNAs involved in the very early stage of seed germination

Liwen Wang, Huaihua Liu, Detao Li, Huabang Chen

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 286 KB

english, 2011

59

Development of thepiggyBactransposable system forPlasmodium bergheiand its application for random mutagenesis in malaria parasites

Jannik Fonager, Blandine MD Franke-Fayard, John H Adams, Jai Ramesar, Onny Klop, Shahid M Khan, Chris J Janse, Andrew P Waters

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.33 MB

english, 2011

60

RefGenes: identification of reliable and condition specific reference genes for RT-qPCR data normalization

Tomas Hruz, Markus Wyss, Mylene Docquier, Michael W Pfaffl, Sabine Masanetz, Lorenzo Borghi, Phebe Verbrugghe, Luba Kalaydjieva, Stefan Bleuler, Oliver Laule, Patrick Descombes, Wilhelm Gruissem, Phil

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.03 MB

english, 2011

61

Aludistribution and mutation types of cancer genes

Wensheng Zhang, Andrea Edwards, Wei Fan, Prescott Deininger, Kun Zhang

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 702 KB

english, 2011

62

Composite transcriptome assembly of RNA-seq data in a sheep model for delayed bone healing

Marten Jäger, Claus-Eric Ott, Johannes Grünhagen, Jochen Hecht, Hanna Schell, Stefan Mundlos, Georg N Duda, Peter N Robinson, Jasmin Lienau

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.40 MB

english, 2011

63

Proteomic analysis of the marine diatomThalassiosira pseudonanaupon exposure to benzo(a)pyrene

Raquel N Carvalho, Teresa Lettieri

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.22 MB

english, 2011

64

Identification and analysis of the germin-like gene family in soybean

Mo Lu, Ying-Peng Han, Ji-Guo Gao, Xiang-Jing Wang, Wen-Bin Li

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 128 KB

english, 2011

65

Comparative transcriptome profiling of amyloid precursor protein family members in the adult cortex

Dorothee Aydin, Mikhail A Filippov, Jakob-Andreas Tschäpe, Norbert Gretz, Marco Prinz, Roland Eils, Benedikt Brors, Ulrike C Müller

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1003 KB

english, 2011

66

Gene discovery in EST sequences from the wheat leaf rust fungusPuccinia triticinasexual spores, asexual spores and haustoria, compared to other rust and corn smut fungi

Junhuan Xu, Rob Linning, John Fellers, Matthew Dickinson, Wenhan Zhu, Ivan Antonov, David L Joly, Michael E Donaldson, Tamar Eilam, Yehoshua Anikster, Travis Banks, Sarah Munro, Michael Mayo, Brian Wy

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.15 MB

english, 2011

67

A cell spot microarray method for production of high density siRNA transfection microarrays

Juha K Rantala, Rami Mäkelä, Anna-Riina Aaltola, Petra Laasola, John-Patrick Mpindi, Matthias Nees, Petri Saviranta, Olli Kallioniemi

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.04 MB

english, 2011

68

Comparative analysis of mitochondrial genomes between a wheat K-type cytoplasmic male sterility (CMS) line and its maintainer line

Huitao Liu, Peng Cui, Kehui Zhan, Qiang Lin, Guoyin Zhuo, Xiaoli Guo, Feng Ding, Wenlong Yang, Dongcheng Liu, Songnian Hu, Jun Yu, Aimin Zhang

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.50 MB

english, 2011

69

Taxonomically restricted genes are associated with the evolution of sociality in the honey bee

Brian R Johnson, Neil D Tsutsui

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 584 KB

english, 2011

70

Rice-Map: a new-generation rice genome browser

Jun Wang, Lei Kong, Shuqi Zhao, He Zhang, Liang Tang, Zhe Li, Xiaocheng Gu, Jingchu Luo, Ge Gao

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.26 MB

english, 2011

71

RS-SNP: a random-set method for genome-wide association studies

Annarita D’Addabbo, Orazio Palmieri, Anna Latiano, Vito Annese, Sayan Mukherjee, Nicola Ancona

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 260 KB

english, 2011

72

Stochastic variation of transcript abundance in C57BL/6J mice

Peter T Vedell, Karen L Svenson, Gary A Churchill

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.16 MB

english, 2011

73

Shotgun sequencing ofYersinia enterocoliticastrain W22703 (biotype 2, serotype O:9): genomic evidence for oscillation between invertebrates and mammals

Thilo M Fuchs, Katharina Brandt, Mandy Starke, Thomas Rattei

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 347 KB

english, 2011

74

High-throughput sequencing ofAstrammina rara: Sampling the giant genome of a giant foraminiferan protist

Andrea Habura, Yubo Hou, Andrew A Reilly, Samuel S Bowser

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 910 KB

english, 2011

75

Complete genome sequencing and analysis of a Lancefield group GStreptococcus dysgalactiaesubsp.equisimilisstrain causing streptococcal toxic shock syndrome (STSS)

Yumi Shimomura, Kayo Okumura, Somay Yamagata Murayama, Junji Yagi, Kimiko Ubukata, Teruo Kirikae, Tohru Miyoshi-Akiyama

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.88 MB

english, 2011

76

Reliability analysis of the AhringerCaenorhabditis elegansRNAi feeding library: a guide for genome-wide screens

Wubin Qu, Changhong Ren, Yuan Li, Jinping Shi, Jiye Zhang, Xiaolei Wang, Xingyi Hang, Yiming Lu, Dongsheng Zhao, Chenggang Zhang

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 260 KB

english, 2011

77

Modulation of gene expression in heart and liver of hibernating black bears(Ursus americanus)

Vadim B Fedorov, Anna V Goropashnaya, Øivind Tøien, Nathan C Stewart, Celia Chang, Haifang Wang, Jun Yan, Louise C Showe, Michael K Showe, Brian M Barnes

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.70 MB

english, 2011

78

Computational study of associations between histone modification and protein-DNA binding in yeast genome by integrating diverse information

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.17 MB

english, 2011

79

Comparative genomic analyses identify common molecular pathways modulated upon exposure to low doses of arsenic and cadmium

Margaret Ann Benton, Julia E Rager, Lisa Smeester, Rebecca C Fry

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.56 MB

english, 2011

80

A high-resolution linkage map for comparative genome analysis and QTL fine mapping in Asian seabass,Lates calcarifer

Chun Ming Wang, Zhi Yi Bai, Xiao Ping He, Grace Lin, Jun Hong Xia, Fei Sun, Loong Chueng Lo, Felicia Feng, Ze Yuan Zhu, Gen Hua Yue

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 4.09 MB

english, 2011

81

Genome-wide analysis of the role of GlnR inStreptomyces venezuelaeprovides new insights into global nitrogen regulation in actinomycetes

Steven T Pullan, Govind Chandra, Mervyn J Bibb, Mike Merrick

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 778 KB

english, 2011

82

Deep sequencing analysis of the developing mouse brain reveals a novel microRNA

King-Hwa Ling, Peter J Brautigan, Christopher N Hahn, Tasman Daish, John R Rayner, Pike-See Cheah, Joy M Raison, Sandra Piltz, Jeffrey R Mann, Deidre M Mattiske, Paul Q Thomas, David L Adelson, Hamish

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 7.74 MB

english, 2011

83

Expansion and functional diversification of a leucyl aminopeptidase family that encodes the major protein constituents ofDrosophilasperm

Steve Dorus, Elaine C Wilkin, Timothy L Karr

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.45 MB

english, 2011

84

Genome-wide identification and expression profiling ofauxin response factor(ARF) gene family in maize

Hongyan Xing, Ramesh N Pudake, Ganggang Guo, Guofang Xing, Zhaorong Hu, Yirong Zhang, Qixin Sun, Zhongfu Ni

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.85 MB

english, 2011

85

Detection and mapping of mtDNA SNPs in Atlantic salmon using high throughput DNA sequencing

Olafur Fridjonsson, Kristinn Olafsson, Scott Tompsett, Snaedis Bjornsdottir, Sonia Consuegra, David Knox, Carlos Garcia de Leaniz, Steinunn Magnusdottir, Gudbjorg Olafsdottir, Eric Verspoor, Sigridur

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.39 MB

english, 2011

86

Analysis of the unexplored features ofrrs(16S rDNA) of the GenusClostridium

Vipin Chandra Kalia, Tanmoy Mukherjee, Ashish Bhushan, Jayadev Joshi, Pratap Shankar, Nusrat Huma

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 25.52 MB

english, 2011

87

A first generation integrated map of the rainbow trout genome

Yniv Palti, Carine Genet, Ming-Cheng Luo, Aurélie Charlet, Guangtu Gao, Yuqin Hu, Cecilia Castaño-Sánchez, Kamila Tabet-Canale, Francine Krieg, Jianbo Yao, Roger L Vallejo, Caird E Rexroad

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 648 KB

english, 2011

88

Gene expression profiles in rat mesenteric lymph nodes upon supplementation with Conjugated Linoleic Acid during gestation and suckling

Elisabet Selga, Francisco J Pérez-Cano, Àngels Franch, Carolina Ramírez-Santana, Montserrat Rivero, Carlos J Ciudad, Cristina Castellote, Véronique Noé

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 965 KB

english, 2011

89

Copy number variation of microRNA genes in the human genome

Malgorzata Marcinkowska, Maciej Szymanski, Wlodzimierz J Krzyzosiak, Piotr Kozlowski

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 633 KB

english, 2011

90

Accurate and exact CNV identification from targeted high-throughput sequence data

Alex S Nord, Ming Lee, Mary-Claire King, Tom Walsh

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.17 MB

english, 2011

91

Clostridium botulinumgroup III: a group with dual identity shaped by plasmids, phages and mobile elements

Hanna Skarin, Therese Håfström, Josefina Westerberg, Bo Segerman

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.59 MB

english, 2011

92

A systematic analysis of the skeletal muscle miRNA transcriptome of chicken varieties with divergent skeletal muscle growth identifies novel miRNAs and differentially expressed miRNAs

Tingting Li, Rimao Wu, Yong Zhang, Dahai Zhu

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.44 MB

english, 2011

93

Comparative supragenomic analyses among the pathogensStaphylococcus aureus, Streptococcus pneumoniae, andHaemophilus influenzaeUsing a modification of the finite supragenome model

Robert Boissy, Azad Ahmed, Benjamin Janto, Josh Earl, Barry G Hall, Justin S Hogg, Gordon D Pusch, Luisa N Hiller, Evan Powell, Jay Hayes, Susan Yu, Sandeep Kathju, Paul Stoodley, J Christopher Post,

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.48 MB

english, 2011

94

Genomic insight into the common carp (Cyprinus carpio) genome by sequencing analysis of BAC-end sequences

Peng Xu, Jiongtang Li, Yan Li, Runzi Cui, Jintu Wang, Jian Wang, Yan Zhang, Zixia Zhao, Xiaowen Sun

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 433 KB

english, 2011

95

A high-density transcript linkage map with 1,845 expressed genes positioned by microarray-based Single Feature Polymorphisms (SFP) inEucalyptus

Leandro G Neves, Eva MC Mamani, Acelino C Alfenas, Matias Kirst, Dario Grattapaglia

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.05 MB

english, 2011

96

Comprehensive prediction of chromosome dimer resolution sites in bacterial genomes

Nobuaki Kono, Kazuharu Arakawa, Masaru Tomita

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 745 KB

english, 2011

97

Deep sequencing reveals the complex and coordinated transcriptional regulation of genes related to grain quality in rice cultivars

RC Venu, MV Sreerekha, Kan Nobuta, André Beló, Yuese Ning, Gynheung An, Blake C Meyers, Guo-Liang Wang

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.52 MB

english, 2011

98

De novoassembly and transcriptome analysis of five major tissues ofJatropha curcasL. using GS FLX titanium platform of 454 pyrosequencing

Purushothaman Natarajan, Madasamy Parani

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.57 MB

english, 2011

99

FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens

Rupanjali Chaudhuri, Faraz Alam Ansari, Muthukurussi Varieth Raghunandanan, Srinivasan Ramachandran

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.52 MB

english, 2011

100

Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells

Edward Dere, Andrea W Lee, Lyle D Burgoon, Timothy R Zacharewski

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.23 MB

english, 2011

101

Assessing pooled BAC and whole genome shotgun strategies for assembly of complex genomes

Niina Haiminen, F Alex Feltus, Laxmi Parida

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.86 MB

english, 2011

102

Interactions of a pesticide/heavy metal mixture in marine bivalves: a transcriptomic assessment

Francesco Dondero, Mohamed Banni, Alessandro Negri, Lara Boatti, Alessandro Dagnino, Aldo Viarengo

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.39 MB

english, 2011

103

Identification of novel target genes of nerve growth factor (NGF) in human mastocytoma cell line (HMC-1 (V560G c-Kit)) by transcriptome analysis

Priyanka Dutta, Alexandra Koch, Bjoern Breyer, Heike Schneider, Oliver Dittrich-Breiholz, Michael Kracht, Teruko Tamura

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.71 MB

english, 2011

104

First complete genome sequence of infectious laryngotracheitis virus

Sang-Won Lee, Philip F Markham, John F Markham, Ivonne Petermann, Amir H Noormohammadi, Glenn F Browning, Nino P Ficorilli, Carol A Hartley, Joanne M Devlin

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 6.87 MB

english, 2011

105

Characterization and genome sequencing of twoPropionibacterium acnesphages displaying pseudolysogeny

Rolf Lood, Mattias Collin

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 886 KB

english, 2011

106

Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems

S Samuel Yang, Zheng Jin Tu, Foo Cheung, Wayne Wenzhong Xu, JoAnn FS Lamb, Hans-Joachim G Jung, Carroll P Vance, John W Gronwald

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.57 MB

english, 2011

107

Time-series clustering of gene expression in irradiated and bystander fibroblasts: an application of FBPA clustering

Shanaz A Ghandhi, Anshu Sinha, Marianthi Markatou, Sally A Amundson

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 6.10 MB

english, 2011

108

Global gene expression profile progression in Gaucher disease mouse models

You-Hai Xu, Li Jia, Brian Quinn, Matthew Zamzow, Keith Stringer, Bruce Aronow, Ying Sun, Wujuan Zhang, Kenneth DR Setchell, Gregory A Grabowski

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 5.28 MB

english, 2011

109

Gene expression patterns in four brain areas associate with quantitative measure of estrous behavior in dairy cows

Arun Kommadath, Henri Woelders, Bonne Beerda, Herman A Mulder, Agnes AC de Wit, Roel F Veerkamp, Marinus FW te Pas, Mari A Smits

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 519 KB

english, 2011

110

Expression variability of co-regulated genes differentiatesSaccharomyces cerevisiaestrains

Laura Carreto, Maria F Eiriz, Inês Domingues, Dorit Schuller, Gabriela R Moura, Manuel AS Santos

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.61 MB

english, 2011

111

Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome

Bonnie A Fraser, Cameron J Weadick, Ilana Janowitz, F Helen Rodd, Kimberly A Hughes

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.60 MB

english, 2011

112

Nucleosome DNA sequence structure of isochores

Zakharia M Frenkel, Thomas Bettecken, Edward N Trifonov

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 906 KB

english, 2011

113

Recent acquisition of imprinting at the rodentSfmbt2locus correlates with insertion of a large block of miRNAs

Qianwei Wang, Jacqueline Chow, Jenny Hong, Anne Ferguson Smith, Carol Moreno, Peter Seaby, Paul Vrana, Kamelia Miri, Joon Tak, Eu Ddeum Chung, Gabriela Mastromonaco, Isabella Caniggia, Susannah Varmuz

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.56 MB

english, 2011

114

Novel simple sequence repeats (SSRs) detected by ND-FISH in heterochromatin ofDrosophila melanogaster

Ángeles Cuadrado, Nicolás Jouve

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 5.04 MB

english, 2011

115

Identification of ovule transcripts from the Apospory-Specific Genomic Region (ASGR)-carrier chromosome

Yajuan Zeng, Joann Conner, Peggy Ozias-Akins

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 957 KB

english, 2011

116

Detection of small RNAs inBordetella pertussisand identification of a novel repeated genetic element

David Hot, Stéphanie Slupek, Bérénice Wulbrecht, Anthony D’Hondt, Christine Hubans, Rudy Antoine, Camille Locht, Yves Lemoine

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 7.40 MB

english, 2011

117

Transcriptomic analysis of milk somatic cells in mastitis resistant and susceptible sheep upon challenge withStaphylococcus epidermidisandStaphylococcus aureus

Cécile MD Bonnefont, Mehdi Toufeer, Cécile Caubet, Eliane Foulon, Christian Tasca, Marie-Rose Aurel, Dominique Bergonier, Séverine Boullier, Christèle Robert-Granié, Gilles Foucras, Rachel Rupp

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.61 MB

english, 2011

118

The testosterone-dependent and independent transcriptional networks in the hypothalamus ofGpr54andKiss1knockout male mice are not fully equivalent

Leah M Prentice, Xavier d’Anglemont de Tassigny, Steven McKinney, Teresa Ruiz de Algara, Damian Yap, Gulisa Turashvili, Steven Poon, Margaret Sutcliffe, Pat Allard, Angela Burleigh, John Fee, David G

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.23 MB

english, 2011

119

Bioinformatic evidence for a widely distributed, ribosomally produced electron carrier precursor, its maturation proteins, and its nicotinoprotein redox partners

Journal:

Année:

2011

Langue:

english

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PDF, 986 KB

english, 2011

120

Evolution of an endofungal Lifestyle: Deductions from theBurkholderia rhizoxinicaGenome

Gerald Lackner, Nadine Moebius, Laila P Partida-Martinez, Sebastian Boland, Christian Hertweck

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.36 MB

english, 2011

121

Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing

Shannon CK Straub, Mark Fishbein, Tatyana Livshultz, Zachary Foster, Matthew Parks, Kevin Weitemier, Richard C Cronn, Aaron Liston

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 743 KB

english, 2011

122

Characterization of age-related gene expression profiling in bone marrow and epididymal adipocytes

Li-Fen Liu, Wen-Jun Shen, Masami Ueno, Shailja Patel, Fredric B Kraemer

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.73 MB

english, 2011

123

A comprehensive platform for highly multiplexed mammalian functional genetic screens

Troy Ketela, Lawrence E Heisler, Kevin R Brown, Ron Ammar, Dahlia Kasimer, Anuradha Surendra, Elke Ericson, Kim Blakely, Dina Karamboulas, Andrew M Smith, Tanja Durbic, Anthony Arnoldo, Kahlin Cheung-

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.83 MB

english, 2011

124

Genome-scale computational analysis of DNA curvature and repeats in Arabidopsis and rice uncovers plant-specific genomic properties

Ali Masoudi-Nejad, Sara Movahedi, Ruy Jáuregui

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.02 MB

english, 2011

125

Eukaryotic Protein Kinases (ePKs) of the Helminth ParasiteSchistosoma mansoni

Luiza F Andrade, Laila A Nahum, Lívia GA Avelar, Larissa L Silva, Adhemar Zerlotini, Jerônimo C Ruiz, Guilherme Oliveira

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.82 MB

english, 2011

126

Common and unique elements of the ABA-regulated transcriptome of Arabidopsis guard cells

Rui-Sheng Wang, Sona Pandey, Song Li, Timothy E Gookin, Zhixin Zhao, Réka Albert, Sarah M Assmann

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.16 MB

english, 2011

127

Physical mapping and BAC-end sequence analysis provide initial insights into the flax (Linum usitatissimumL.) genome

Raja Ragupathy, Rajkumar Rathinavelu, Sylvie Cloutier

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 627 KB

english, 2011

128

The impact of oxygen on the transcriptome of recombinantS. cerevisiaeandP. pastoris- a comparative analysis

Kristin Baumann, Laura Dato, Alexandra B Graf, Gianni Frascotti, Martin Dragosits, Danilo Porro, Diethard Mattanovich, Pau Ferrer, Paola Branduardi

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.40 MB

english, 2011

129

Probing genomic diversity and evolution ofStreptococcus suisserotype 2 by NimbleGen tiling arrays

Zuowei Wu, Ming Li, Changjun Wang, Jing Li, Na Lu, Ruifen Zhang, Yongqiang Jiang, Ruifu Yang, Cuihua Liu, Hui Liao, George F Gao, Jiaqi Tang, Baoli Zhu

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.69 MB

english, 2011

130

A systematic evaluation of expression of HERV-W elements; influence of genomic context, viral structure and orientation

Fang Li, Christoffer Nellåker, Robert H Yolken, Håkan Karlsson

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.06 MB

english, 2011

131

Analysis of Gene expression in soybean (Glycine max) roots in response to the root knot nematodeMeloidogyne incognitausing microarrays and KEGG pathways

Heba MM Ibrahim, Parsa Hosseini, Nadim W Alkharouf, Ebtissam HA Hussein, Abd El Kader Y Gamal El-Din, Mohammed AM Aly, Benjamin F Matthews

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 5.65 MB

english, 2011

132

The mitochondrial genome of the ascalaphid owlflyLibelloides macaroniusand comparative evolutionary mitochondriomics of neuropterid insects

Enrico Negrisolo, Massimiliano Babbucci, Tomaso Patarnello

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.01 MB

english, 2011

133

Transcriptional profiling of fetal hypothalamic TRH neurons

Magdalena Guerra-Crespo, Carlos Pérez-Monter, Sarath Chandra Janga, Santiago Castillo-Ramírez, Rosa María Gutiérrez-Rios, Patricia Joseph-Bravo, Leonor Pérez-Martínez, Jean-Louis Charli

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 644 KB

english, 2011

134

The midgut transcriptome ofPhlebotomus(Larroussius)perniciosus, a vector ofLeishmania infantum: comparison of sugar fed and blood fed sand flies

Anna Dostálová, Jan Votýpka, Amanda J Favreau, Kent D Barbian, Petr Volf, Jesus G Valenzuela, Ryan C Jochim

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 643 KB

english, 2011

135

Identification of gene expression changes associated with the initiation of diapause in the brain of the cotton bollworm,Helicoverpa armigera

Bin Bao, Wei-Hua Xu

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.76 MB

english, 2011

136

Strengthening insights into host responses to mastitis infection in ruminants by combining heterogeneous microarray data sources

Sem Genini, Bouabid Badaoui, Gert Sclep, Stephen C Bishop, Dave Waddington, Marie-Hélène Pinard van der Laan, Christophe Klopp, Cédric Cabau, Hans-Martin Seyfert, Wolfram Petzl, Kirsty Jensen, Elizabe

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.04 MB

english, 2011

137

Genome-wide dynamics of a bacterial response to antibiotics that target the cell envelope

Andy Hesketh, Chris Hill, Jehan Mokhtar, Gabriela Novotna, Ngat Tran, Mervyn Bibb, Hee-Jeon Hong

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.96 MB

english, 2011

138

Comprehensive transcriptome analysis of the highly complexPisum sativumgenome using next generation sequencing

Susanne U Franssen, Roshan P Shrestha, Andrea Bräutigam, Erich Bornberg-Bauer, Andreas PM Weber

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.69 MB

english, 2011

139

Transcriptional double-autorepression feedforward circuits act for multicellularity and nervous system development

Hisakazu Iwama, Koji Murao, Hitomi Imachi, Toshihiko Ishida

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 651 KB

english, 2011

140

Meta-analysis of heterogeneous Down Syndrome data reveals consistent genome-wide dosage effects related to neurological processes

Mireia Vilardell, Axel Rasche, Anja Thormann, Elisabeth Maschke-Dutz, Luis A Pérez-Jurado, Hans Lehrach, Ralf Herwig

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.23 MB

english, 2011

141

Genome-wide patterns of promoter sharing and co-expression in bovine skeletal muscle

Quan Gu, Shivashankar H Nagaraj, Nicholas J Hudson, Brian P Dalrymple, Antonio Reverter

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.37 MB

english, 2011

142

Detecting copy number status and uncovering subclonal markers in heterogeneous tumor biopsies

Fabio Parisi, Stephan Ariyan, Deepak Narayan, Antonella Bacchiocchi, Kathleen Hoyt, Elaine Cheng, Fang Xu, Peining Li, Ruth Halaban, Yuval Kluger

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.86 MB

english, 2011

143

Genome-wide survey reveals dynamic widespread tissue-specific changes in DNA methylation during development

Ping Liang, Fei Song, Srimoyee Ghosh, Evan Morien, Maochun Qin, Saleh Mahmood, Kyoko Fujiwara, Jun Igarashi, Hiroki Nagase, William A Held

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.19 MB

english, 2011

144

The effect of measurement error of phenotypes on genome wide association studies

William Barendse

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.91 MB

english, 2011

145

QTL underlying resistance to two HG types of Heterodera glycines found in soybean cultivar 'L-10'

Wei Chang, Limin Dong, Zizhen Wang, Haibo Hu, Yingpeng Han, Weili Teng, Hongxia Zhang, Maozu Guo, Wenbin Li

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.04 MB

english, 2011

146

Transcriptome sequencing and microarray development for the Manila clam,Ruditapes philippinarum: genomic tools for environmental monitoring

Massimo Milan, Alessandro Coppe, Richard Reinhardt, Leonor M Cancela, Ricardo B Leite, Carlos Saavedra, Claudio Ciofi, Guido Chelazzi, Tomaso Patarnello, Stefania Bortoluzzi, Luca Bargelloni

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.21 MB

english, 2011

147

Exploring the symbiotic pangenome of the nitrogen-fixing bacteriumSinorhizobium meliloti

Marco Galardini, Alessio Mengoni, Matteo Brilli, Francesco Pini, Antonella Fioravanti, Susan Lucas, Alla Lapidus, Jan-Fang Cheng, Lynne Goodwin, Samuel Pitluck, Miriam Land, Loren Hauser, Tanja Woyke,

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.11 MB

english, 2011

148

Differential phylogenetic expansions in BAHD acyltransferases across five angiosperm taxa and evidence of divergent expression amongPopulusparalogues

Lindsey K Tuominen, Virgil E Johnson, Chung-Jui Tsai

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.52 MB

english, 2011

149

Genome-level homology and phylogeny ofShewanella(Gammaproteobacteria: lteromonadales: Shewanellaceae)

Rebecca B Dikow

Journal:

Année:

2011

Langue:

english

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PDF, 2.44 MB

english, 2011

150

Escherichia coligenome-wide promoter analysis: Identification of additional AtoC binding target elements

Eleftherios Pilalis, Aristotelis A Chatziioannou, Asterios I Grigoroudis, Christos A Panagiotidis, Fragiskos N Kolisis, Dimitrios A Kyriakidis

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.32 MB

english, 2011

151

A sequence-based genetic linkage map as a reference forBrassica rapapseudochromosome assembly

Yan Wang, Silong Sun, Bo Liu, Hui Wang, Jie Deng, Yongcui Liao, Qian Wang, Feng Cheng, Xiaowu Wang, Jian Wu

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.18 MB

english, 2011

152

The epigenetic regulator Histone Deacetylase 1 promotes transcription of a core neurogenic programme in zebrafish embryos

Michael RM Harrison, Aristophanes S Georgiou, Herman P Spaink, Vincent T Cunliffe

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.95 MB

english, 2011

153

Organization and molecular evolution of a disease-resistance gene cluster in coffee trees

Alessandra F Ribas, Alberto Cenci, Marie-Christine Combes, Hervé Etienne, Philippe Lashermes

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.55 MB

english, 2011

154

Genome-wide profiling of G protein-coupled receptors in cerebellar granule neurons using high-throughput, real-time PCR

Benjamin Maurel, Anne Le Digarcher, Christelle Dantec, Laurent Journot

Journal:

Année:

2011

Langue:

english

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english, 2011

155

Fosmid library end sequencing reveals a rarely known genome structure of marine shrimpPenaeus monodon

Shiao-Wei Huang, You-Yu Lin, En-Min You, Tze-Tze Liu, Hung-Yu Shu, Keh-Ming Wu, Shih-Feng Tsai, Chu-Fang Lo, Guang-Hsiung Kou, Gwo-Chin Ma, Ming Chen, Dongying Wu, Takashi Aoki, Ikuo Hirono, Hon-Tsen

Journal:

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2011

Langue:

english

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PDF, 358 KB

english, 2011

156

Comprehensive assessment of sequence variation within the copy number variable defensin cluster on 8p23 by target enriched in-depth 454 sequencing

Stefan Taudien, Karol Szafranski, Marius Felder, Marco Groth, Klaus Huse, Francesca Raffaelli, Andreas Petzold, Xinmin Zhang, Philip Rosenstiel, Jochen Hampe, Stefan Schreiber, Matthias Platzer

Journal:

Année:

2011

Langue:

english

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PDF, 2.36 MB

english, 2011

157

Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing

André Gilles, Emese Meglécz, Nicolas Pech, Stéphanie Ferreira, Thibaut Malausa, Jean-François Martin

Journal:

Année:

2011

Langue:

english

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PDF, 782 KB

english, 2011

158

BAC library resources for map-based cloning and physical map construction in barley (Hordeum vulgareL.)

Daniela Schulte, Ruvini Ariyadasa, Bujun Shi, Delphine Fleury, Chris Saski, Michael Atkins, Pieter deJong, Cheng-Cang Wu, Andreas Graner, Peter Langridge, Nils Stein

Journal:

Année:

2011

Langue:

english

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PDF, 1.84 MB

english, 2011

159

Integration of Solexa sequences on an ultradense genetic map inBrassica rapaL.

Wei Li, Jiefu Zhang, Yanglong Mou, Jianfeng Geng, Peter BE McVetty, Shengwu Hu, Genyi Li

Journal:

Année:

2011

Langue:

english

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PDF, 1.79 MB

english, 2011

160

Blueprint for a minimal photoautotrophic cell: conserved and variable genes inSynechococcus elongatusPCC 7942

Luis Delaye, Carmen M González-Domenech, María P Garcillán-Barcia, Juli Peretó, Fernando de la Cruz, Andrés Moya

Journal:

Année:

2011

Langue:

english

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PDF, 2.18 MB

english, 2011

161

A simple Bayesian estimate of direct RNAi gene regulation events from differential gene expression profiles

Paul A Wilson, Mathew Plucinski

Journal:

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2011

Langue:

english

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PDF, 1.09 MB

english, 2011

162

An untargeted multi-technique metabolomics approach to studying intracellular metabolites of HepG2 cells exposed to 2,3,7,8-tetrachlorodibenzo-p-dioxin

Ainhoa Ruiz-Aracama, Ad Peijnenburg, Jos Kleinjans, Danyel Jennen, Joost van Delft, Caroline Hellfrisch, Arjen Lommen

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.16 MB

english, 2011

163

Analysis of expressed sequence tags generated from full-length enriched cDNA libraries of melon

Christian Clepet, Tarek Joobeur, Yi Zheng, Delphine Jublot, Mingyun Huang, Veronica Truniger, Adnane Boualem, Maria Elena Hernandez-Gonzalez, Ramon Dolcet-Sanjuan, Vitaly Portnoy, Albert Mascarell-Cre

Journal:

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2011

Langue:

english

Fichier:

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english, 2011

164

UnderstandingStreptococcus suisserotype 2 infection in pigs through a transcriptional approach

Manli Liu, Liurong Fang, Chen Tan, Tiansi Long, Huanchun Chen, Shaobo Xiao

Journal:

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2011

Langue:

english

Fichier:

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english, 2011

165

The aspartic proteinase family of threePhytophthoraspecies

John Kay, Harold JG Meijer, Arjen ten Have, Jan AL van Kan

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 434 KB

english, 2011

166

Genotype-specific responses in Atlantic salmon (Salmo salar) subject to dietary fish oil replacement by vegetable oil: a liver transcriptomic analysis

Sofia Morais, Jarunan Pratoomyot, John B Taggart, James E Bron, Derrick R Guy, J Gordon Bell, Douglas R Tocher

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 431 KB

english, 2011

167

Identification of factors required for meristem function in Arabidopsis using a novel next generation sequencing fast forward genetics approach

Michal Mokry, Isaäc J Nijman, Anja van Dijken, Rene Benjamins, Renze Heidstra, Ben Scheres, Edwin Cuppen

Journal:

Année:

2011

Langue:

english

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PDF, 1.58 MB

english, 2011

168

Modeling the asymmetric evolution of a mouse and rat-specific microRNA gene cluster intron 10 of the Sfmbt2 gene

Stefan Lehnert, Vladimir Kapitonov, Pushpike J Thilakarathne, Frans C Schuit

Journal:

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2011

Langue:

english

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PDF, 631 KB

english, 2011

169

A canine model of Cohen syndrome: Trapped Neutrophil Syndrome

Jeremy R Shearman, Alan N Wilton

Journal:

Année:

2011

Langue:

english

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PDF, 400 KB

english, 2011

170

Profiling the venom gland transcriptomes of Costa Rican snakes by 454 pyrosequencing

Jordi Durban, Paula Juárez, Yamileth Angulo, Bruno Lomonte, Marietta Flores-Diaz, Alberto Alape-Girón, Mahmood Sasa, Libia Sanz, José M Gutiérrez, Joaquín Dopazo, Ana Conesa, Juan J Calvete

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.79 MB

english, 2011

171

Selenium toxicity but not deficient or super-nutritional selenium status vastly alters the transcriptome in rodents

Anna M Raines, Roger A Sunde

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.36 MB

english, 2011

172

Novel transposable elements fromAnopheles gambiae

Rita D Fernández-Medina, Cláudio J Struchiner, José MC Ribeiro

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.34 MB

english, 2011

173

Genes in the terminal regions of orthopoxvirus genomes experience adaptive molecular evolution

David J Esteban, Anne P Hutchinson

Journal:

Année:

2011

Langue:

english

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PDF, 5.34 MB

english, 2011

174

GiSAO.db: a database for ageing research

Edith Hofer, Gerhard T Laschober, Matthias Hackl, Gerhard G Thallinger, Günter Lepperdinger, Johannes Grillari, Pidder Jansen-Dürr, Zlatko Trajanoski

Journal:

Année:

2011

Langue:

english

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PDF, 693 KB

english, 2011

175

Transcriptomic assessment of resistance to effects of an aryl hydrocarbon receptor (AHR) agonist in embryos of Atlantic killifish (Fundulus heteroclitus) from a marine Superfund site

Marjorie F Oleksiak, Sibel I Karchner, Matthew J Jenny, Diana G Franks, David B Mark Welch, Mark E Hahn

Journal:

Année:

2011

Langue:

english

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PDF, 3.93 MB

english, 2011

176

Microarray analysis and scale-free gene networks identify candidate regulators in drought-stressed roots of loblolly pine (P. taedaL.)

W Walter Lorenz, Rob Alba, Yuan-Sheng Yu, John M Bordeaux, Marta Simões, Jeffrey FD Dean

Journal:

Année:

2011

Langue:

english

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PDF, 2.32 MB

english, 2011

177

Transcriptome sequencing of lentil based on second-generation technology permits large-scale unigene assembly and SSR marker discovery

Sukhjiwan Kaur, Noel OI Cogan, Luke W Pembleton, Maiko Shinozuka, Keith W Savin, Michael Materne, John W Forster

Journal:

Année:

2011

Langue:

english

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PDF, 339 KB

english, 2011

178

A genome scan for quantitative trait loci affecting cyanogenic potential of cassava root in an outbred population

Sukhuman Whankaew, Supannee Poopear, Supanath Kanjanawattanawong, Sithichoke Tangphatsornruang, Opas Boonseng, David A Lightfoot, Kanokporn Triwitayakorn

Journal:

Année:

2011

Langue:

english

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PDF, 340 KB

english, 2011

179

Differential distribution of a SINE element in theEntamoeba histolyticaandEntamoeba dispargenomes: Role of the LINE-encoded endonuclease

Vandana Kumari, Rahul Sharma, Vijay P Yadav, Abhishek K Gupta, Alok Bhattacharya, Sudha Bhattacharya

Journal:

Année:

2011

Langue:

english

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PDF, 6.60 MB

english, 2011

180

Analysis of common bean expressed sequence tags identifies sulfur metabolic pathways active in seed and sulfur-rich proteins highly expressed in the absence of phaseolin and major lectins

Fuqiang Yin, Agnieszka Pajak, Ralph Chapman, Andrew Sharpe, Shangzhi Huang, Frédéric Marsolais

Journal:

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2011

Langue:

english

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PDF, 1.70 MB

english, 2011

181

The CRE1 carbon catabolite repressor of the fungusTrichoderma reesei:a master regulator of carbon assimilation

Thomas Portnoy, Antoine Margeot, Rita Linke, Lea Atanasova, Erzsébet Fekete, Erzsébet Sándor, Lukas Hartl, Levente Karaffa, Irina S Druzhinina, Bernhard Seiboth, Stéphane Le Crom, Christian P Kubicek

Journal:

Année:

2011

Langue:

english

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PDF, 1.36 MB

english, 2011

182

A data mining approach for classifying DNA repair genes into ageing-related or non-ageing-related

Alex A Freitas, Olga Vasieva, João Pedro de Magalhães

Journal:

Année:

2011

Langue:

english

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PDF, 681 KB

english, 2011

183

Genomic features and computational identification of human microRNAs under long-range developmental regulation

Ying Sheng, Christopher Previti

Journal:

Année:

2011

Langue:

english

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PDF, 730 KB

english, 2011

184

Transcriptome profiling of chemosensory appendages in the malaria vectorAnopheles gambiaereveals tissue- and sex-specific signatures of odor coding

R Jason Pitts, David C Rinker, Patrick L Jones, Antonis Rokas, Laurence J Zwiebel

Journal:

Année:

2011

Langue:

english

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PDF, 2.81 MB

english, 2011

185

The mitochondrial genome sequence of the ciliateParamecium caudatumreveals a shift in nucleotide composition and codon usage within the genusParamecium

Dana Barth, Thomas U Berendonk

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.24 MB

english, 2011

186

Human nucleosomes: special role of CG dinucleotides and Alu-nucleosomes

Thomas Bettecken, Zakharia M Frenkel, Edward N Trifonov

Journal:

Année:

2011

Langue:

english

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PDF, 463 KB

english, 2011

187

The development and characterization of a 60K SNP chip for chicken

Martien AM Groenen, Hendrik-Jan Megens, Yalda Zare, Wesley C Warren, LaDeana W Hillier, Richard PMA Crooijmans, Addie Vereijken, Ron Okimoto, William M Muir, Hans H Cheng

Journal:

Année:

2011

Langue:

english

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PDF, 332 KB

english, 2011

188

Global analysis of gene expression in response to L-Cysteine deprivation in the anaerobic protozoan parasiteEntamoeba histolytica

Afzal Husain, Ghulam Jeelani, Dan Sato, Tomoyoshi Nozaki

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.11 MB

english, 2011

189

MicroRNA profiling of rhesus macaque embryonic stem cells

Zhenghua Sun, Qiang Wei, Yanfeng Zhang, Xiechao He, Weizhi Ji, Bing Su

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 4.07 MB

english, 2011

190

Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain

Preethi H Gunaratne, Ya-Chi Lin, Ashley L Benham, Jenny Drnevich, Cristian Coarfa, Jayantha B Tennakoon, Chad J Creighton, Jong H Kim, Aleksandar Milosavljevic, Michael Watson, Sam Griffiths-Jones, Da

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.33 MB

english, 2011

191

BMP signaling components in embryonic transcriptomes of the hover flyEpisyrphus balteatus(Syrphidae)

Steffen Lemke, Dionysios A Antonopoulos, Folker Meyer, Marc H Domanus, Urs Schmidt-Ott

Journal:

Année:

2011

Langue:

english

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PDF, 935 KB

english, 2011

192

Transcriptome map of plant mitochondria reveals islands of unexpected transcribed regions

Sota Fujii, Takushi Toda, Shunsuke Kikuchi, Ryutaro Suzuki, Koji Yokoyama, Hiroko Tsuchida, Kentaro Yano, Kinya Toriyama

Journal:

Année:

2011

Langue:

english

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PDF, 3.04 MB

english, 2011

193

Identification of genes differentially expressed in a resistant reaction toMycosphaerella pinodesin pea using microarray technology

Sara Fondevilla, Helge Küster, Franziska Krajinski, José I Cubero, Diego Rubiales

Journal:

Année:

2011

Langue:

english

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PDF, 388 KB

english, 2011

194

Seeds for effective oligonucleotide design

Lucian Ilie, Silvana Ilie, Shima Khoshraftar, Anahita Mansouri Bigvand

Journal:

Année:

2011

Langue:

english

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PDF, 316 KB

english, 2011

195

Polyomic profiling reveals significant hepatic metabolic alterations in glucagon-receptor (GCGR) knockout mice: implications on anti-glucagon therapies for diabetes

Jianxin Yang, Margit L MacDougall, Michael T McDowell, Li Xi, Ru Wei, William J Zavadoski, Mark P Molloy, John D Baker, Max Kuhn, Over Cabrera, Judith L Treadway

Journal:

Année:

2011

Langue:

english

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PDF, 262 KB

english, 2011

196

Comparative genomics of four closely relatedClostridium perfringensbacteriophages reveals variable evolution among core genes with therapeutic potential

Brian B Oakley, Eldin Talundzic, Cesar A Morales, Kelli L Hiett, Gregory R Siragusa, Nikolay V Volozhantsev, Bruce S Seal

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.24 MB

english, 2011

197

Characterisation of the transcriptome of a wild great titParus majorpopulation by next generation sequencing

Anna W Santure, Jake Gratten, Jim A Mossman, Ben C Sheldon, Jon Slate

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 605 KB

english, 2011

198

MicroRNA expression profiling during the life cycle of the silkworm (Bombyx mori)

Shiping Liu, Liang Zhang, Qibin Li, Ping Zhao, Jun Duan, Daojun Cheng, Zhonghuai Xiang, Qingyou Xia

Journal:

Année:

2011

Langue:

english

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PDF, 133 KB

english, 2011

199

ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using Next Generation Sequence

Jose M Blanca, Laura Pascual, Peio Ziarsolo, Fernando Nuez, Joaquin Cañizares

Journal:

Année:

2011

Langue:

english

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PDF, 755 KB

english, 2011

200

Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis

Fred Y Peng, Randall J Weselake

Journal:

Année:

2011

Langue:

english

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PDF, 1.35 MB

english, 2011

201

Site-Specific Mobilization of Vinyl Chloride Respiration Islands by a Mechanism Common inDehalococcoides

Paul J McMurdie, Laura A Hug, Elizabeth A Edwards, Susan Holmes, Alfred M Spormann

Journal:

Année:

2011

Langue:

english

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PDF, 973 KB

english, 2011

202

Diverse and tissue-enriched small RNAs in the plant pathogenic fungus,Magnaporthe oryzae

Cristiano C Nunes, Malali Gowda, Joshua Sailsbery, Minfeng Xue, Feng Chen, Douglas E Brown, YeonYee Oh, Thomas K Mitchell, Ralph A Dean

Journal:

Année:

2011

Langue:

english

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PDF, 1.79 MB

english, 2011

203

A novel class of heat-responsive small RNAs derived from the chloroplast genome of Chinese cabbage (Brassica rapa)

Lu Wang, Xiang Yu, Han Wang, Yi-Zhen Lu, Marjo de Ruiter, Marcel Prins, Yu-Ke He

Journal:

Année:

2011

Langue:

english

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PDF, 2.50 MB

english, 2011

204

Gene expression profiling of rat spermatogonia and Sertoli cells reveals signaling pathways from stem cells to niche and testicular cancer cells to surrounding stroma

Stephan Ryser, Dominique Glauser, Michelle Vigier, Yong Qiang Zhang, Philippe Tachini, Werner Schlegel, Philippe Durand, Irmgard Irminger-Finger

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.12 MB

english, 2011

205

A honey bee (Apis melliferaL.) PeptideAtlas crossing castes and tissues

Queenie WT Chan, Robert Parker, Zhi Sun, Eric W Deutsch, Leonard J Foster

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.58 MB

english, 2011

206

Genomic comparison of multi-drug resistant invasive and colonizingAcinetobacter baumanniiisolated from diverse human body sites reveals genomic plasticity

Jason W Sahl, J Kristie Johnson, Anthony D Harris, Adam M Phillippy, William W Hsiao, Kerri A Thom, David A Rasko

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 977 KB

english, 2011

207

Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

Patricia Faivre Rampant, Isabelle Lesur, Clément Boussardon, Frédérique Bitton, Marie-Laure Martin-Magniette, Catherine Bodénès, Grégoire Le Provost, Hélène Bergès, Sylvia Fluch, Antoine Kremer, Chris

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.90 MB

english, 2011

208

RNA-seq: technical variability and sampling

Lauren M McIntyre, Kenneth K Lopiano, Alison M Morse, Victor Amin, Ann L Oberg, Linda J Young, Sergey V Nuzhdin

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.42 MB

english, 2011

209

Comparative genomic analysis ofVibrio parahaemolyticus: serotype conversion and virulence

Yuansha Chen, O Colin Stine, Jonathan H Badger, Ana I Gil, G Balakrish Nair, Mitsuaki Nishibuchi, Derrick E Fouts

Journal:

Année:

2011

Langue:

english

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PDF, 1.78 MB

english, 2011

210

Characterization of killer immunoglobulin-like receptor genetics and comprehensive genotyping by pyrosequencing in rhesus macaques

Anna J Moreland, Lisbeth A Guethlein, R Keith Reeves, Karl W Broman, R Paul Johnson, Peter Parham, David H O’Connor, Benjamin N Bimber

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.10 MB

english, 2011

211

A comprehensive gene expression atlas of sex- and tissue-specificity in the malaria vector,Anopheles gambiae

Dean A Baker, Tony Nolan, Bettina Fischer, Alex Pinder, Andrea Crisanti, Steven Russell

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 731 KB

english, 2011

212

Dissecting gene expression in mosquito

Rayna Stamboliyska, John Parsch

Journal:

Année:

2011

Langue:

english

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PDF, 155 KB

english, 2011

213

Genome-wide gene expression analysis supports a developmental model of low temperature tolerance gene regulation in wheat (Triticum aestivum L.)

Debbie Laudencia-Chingcuanco, Seedhabadee Ganeshan, Frank You, Brian Fowler, Ravindra Chibbar, Olin Anderson

Journal:

Année:

2011

Langue:

english

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PDF, 3.60 MB

english, 2011

214

Comprehensive profiling of zebrafish hepatic proximal promoter CpG island methylation and its modification during chemical carcinogenesis

Leda Mirbahai, Timothy D Williams, Huiqing Zhan, Zhiyuan Gong, J Kevin Chipman

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.73 MB

english, 2011

215

De novosequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum)

Maria D Logacheva, Artem S Kasianov, Dmitriy V Vinogradov, Tagir H Samigullin, Mikhail S Gelfand, Vsevolod J Makeev, Aleksey A Penin

Journal:

Année:

2011

Langue:

english

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PDF, 1.41 MB

english, 2011

216

Evolutionarily conserved bias of amino-acid usage refines the definition of PDZ-binding motif

Takahiko Chimura, Thomas Launey, Masao Ito

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.06 MB

english, 2011

217

Comprehensive genetic dissection of wood properties in a widely-grown tropical tree:Eucalyptus

Jean-Marc Gion, Audrey Carouché, Sylvie Deweer, Franck Bedon, Frédérique Pichavant, Jean-Paul Charpentier, Henri Baillères, Philippe Rozenberg, Victor Carocha, Nina Ognouabi, Daniel Verhaegen, Jacquel

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.52 MB

english, 2011

218

Single nucleotide polymorphism discovery in elite north american potato germplasm

John P Hamilton, Candice N Hansey, Brett R Whitty, Kevin Stoffel, Alicia N Massa, Allen Van Deynze, Walter S De Jong, David S Douches, C Robin Buell

Journal:

Année:

2011

Langue:

english

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PDF, 2.55 MB

english, 2011

219

Close 3D proximity of evolutionary breakpoints argues for the notion of spatial synteny

Amélie S Véron, Claire Lemaitre, Christian Gautier, Vincent Lacroix, Marie-France Sagot

Journal:

Année:

2011

Langue:

english

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PDF, 897 KB

english, 2011

220

Identification of SNP and SSR markers in eggplant using RAD tag sequencing

Lorenzo Barchi, Sergio Lanteri, Ezio Portis, Alberto Acquadro, Giampiero Valè, Laura Toppino, Giuseppe Leonardo Rotino

Journal:

Année:

2011

Langue:

english

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PDF, 1.62 MB

english, 2011

221

A tissue-specific landscape of sense/antisense transcription in the mouse intestine

Ulrich C Klostermeier, Matthias Barann, Michael Wittig, Robert Häsler, Andre Franke, Olga Gavrilova, Benjamin Kreck, Christian Sina, Markus B Schilhabel, Stefan Schreiber, Philip Rosenstiel

Journal:

Année:

2011

Langue:

english

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PDF, 1.59 MB

english, 2011

222

Identification of ejaculated proteins in the house mouse (Mus domesticus) via isotopic labeling

Matthew D Dean, Geoffrey D Findlay, Michael R Hoopmann, Christine C Wu, Michael J MacCoss, Willie J Swanson, Michael W Nachman

Journal:

Année:

2011

Langue:

english

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english, 2011

223

Identification of novel soybean microRNAs involved in abiotic and biotic stresses

Franceli R Kulcheski, Luiz FV de Oliveira, Lorrayne G Molina, Maurício P Almerão, Fabiana A Rodrigues, Juliana Marcolino, Joice F Barbosa, Renata Stolf-Moreira, Alexandre L Nepomuceno, Francismar C Ma

Journal:

Année:

2011

Langue:

english

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PDF, 966 KB

english, 2011

224

A comprehensive transcriptome and immune-gene repertoire of the lepidopteran model hostGalleria mellonella

Heiko Vogel, Boran Altincicek, Gernot Glöckner, Andreas Vilcinskas

Journal:

Année:

2011

Langue:

english

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PDF, 3.64 MB

english, 2011

225

Regulation and expression of sexual differentiation factors in embryonic and extragonadal tissues of Atlantic salmon

Kristian R von Schalburg, Motoshige Yasuike, Ryosuke Yazawa, Johan G de Boer, Linda Reid, Stacy So, Adrienne Robb, Eric B Rondeau, Ruth B Phillips, William S Davidson, Ben F Koop

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.35 MB

english, 2011

226

Global analysis of gene expression in mineralizing fish vertebra-derived cell lines: new insights into anti-mineralogenic effect of vanadate

Daniel M Tiago, Vincent Laizé, Luca Bargelloni, Serena Ferraresso, Chiara Romualdi, M Leonor Cancela

Journal:

Année:

2011

Langue:

english

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PDF, 1.85 MB

english, 2011

227

Characterization of single-nucleotide variation in Indian-origin rhesus macaques (Macaca mulatta)

Gloria L Fawcett, Muthuswamy Raveendran, David Rio Deiros, David Chen, Fuli Yu, Ronald Alan Harris, Yanru Ren, Donna M Muzny, Jeffrey G Reid, David A Wheeler, Kimberly C Worley, Steven E Shelton, Ned

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 933 KB

english, 2011

228

Identification of CRISPR and riboswitch related RNAs among novel noncoding RNAs of the euryarchaeonPyrococcus abyssi

Kounthéa Phok, Annick Moisan, Dana Rinaldi, Nicolas Brucato, Agamemnon J Carpousis, Christine Gaspin, Béatrice Clouet-d’Orval

Journal:

Année:

2011

Langue:

english

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PDF, 1.44 MB

english, 2011

229

Chromosome-wide mapping of DNA methylation patterns in normal and malignant prostate cells reveals pervasive methylation of gene-associated and conserved intergenic sequences

Srinivasan Yegnasubramanian, Zhijin Wu, Michael C Haffner, David Esopi, Martin J Aryee, Raghav Badrinath, Tony L He, James D Morgan, Benilton Carvalho, Qizhi Zheng, Angelo M De Marzo, Rafael A Irizarr

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 849 KB

english, 2011

230

Analysis of BAC-end sequences in rainbow trout: Content characterization and assessment of synteny between trout and other fish genomes

Carine Genet, Patrice Dehais, Yniv Palti, Guangtu Gao, Frederick Gavory, Patrick Wincker, Edwige Quillet, Mekki Boussaha

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 226 KB

english, 2011

231

The characterisation of piRNA-related 19mers in the mouse

Harald M Oey, Neil A Youngson, Emma Whitelaw

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.50 MB

english, 2011

232

Comparative genomics ofEscherichia coliisolated from patients with inflammatory bowel disease

Rebecca Munk Vejborg, Viktoria Hancock, Andreas M Petersen, Karen A Krogfelt, Per Klemm

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.95 MB

english, 2011

233

Short read Illumina data for thede novoassembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

Barbara Feldmeyer, Christopher W Wheat, Nicolas Krezdorn, Björn Rotter, Markus Pfenninger

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.08 MB

english, 2011

234

Application of site and haplotype-frequency based approaches for detecting selection signatures in cattle

Saber Qanbari, Daniel Gianola, Ben Hayes, Flavio Schenkel, Steve Miller, Stephen Moore, Georg Thaller, Henner Simianer

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 923 KB

english, 2011

235

Meta-analysis of grain yield QTL identified during agricultural drought in grasses showed consensus

BP Mallikarjuna Swamy, Prashant Vikram, Shalabh Dixit, HU Ahmed, Arvind Kumar

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.34 MB

english, 2011

236

Genomic fluidity: an integrative view of gene diversity within microbial populations

Andrey O Kislyuk, Bart Haegeman, Nicholas H Bergman, Joshua S Weitz

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.11 MB

english, 2011

237

Minimal regulatory spaces in yeast genomes

Wei-Hua Chen, Wu Wei, Martin J Lercher

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 566 KB

english, 2011

238

Transcriptomic, proteomic and metabolomic analysis of UV-B signaling in maize

Paula Casati, Mabel Campi, Darren J Morrow, John F Fernandes, Virginia Walbot

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 925 KB

english, 2011

239

Implication of next-generation sequencing on association studies

Hoicheong Siu, Yun Zhu, Li Jin, Momiao Xiong

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 733 KB

english, 2011

240

Turbot reovirus (SMReV) genome encoding a FAST protein with a non-AUG start site

Fei Ke, Li-Bo He, Chao Pei, Qi-Ya Zhang

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 9.51 MB

english, 2011

241

Comparative genome analysis and genome-guided physiological analysis ofRoseobacter litoralis

Daniela Kalhoefer, Sebastian Thole, Sonja Voget, Rüdiger Lehmann, Heiko Liesegang, Antje Wollher, Rolf Daniel, Meinhard Simon, Thorsten Brinkhoff

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 4.79 MB

english, 2011

242

Unresolved orthology and peculiar coding sequence properties of lamprey genes: theKCNAgene family as test case

Huan Qiu, Falk Hildebrand, Shigehiro Kuraku, Axel Meyer

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.12 MB

english, 2011

243

Multiple platform assessment of the EGF dependent transcriptome by microarray and deep tag sequencing analysis

Franc Llorens, Manuela Hummel, Xavier Pastor, Anna Ferrer, Raquel Pluvinet, Ana Vivancos, Ester Castillo, Susana Iraola, Ana M Mosquera, Eva González, Juanjo Lozano, Matthew Ingham, Juliane C Dohm, Ma

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.52 MB

english, 2011

244

EST mining identifies proteins putatively secreted by the anthracnose pathogenColletotrichum truncatum

Vijai Bhadauria, Sabine Banniza, Albert Vandenberg, Gopalan Selvaraj, Yangdou Wei

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.94 MB

english, 2011

245

Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tickRhipicephalus (Boophilus) microplus

Roberto A Barrero, Gabriel Keeble-Gagnère, Bing Zhang, Paula Moolhuijzen, Kazuho Ikeo, Yoshio Tateno, Takashi Gojobori, Felix D Guerrero, Ala Lew-Tabor, Matthew Bellgard

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.44 MB

english, 2011

246

Chromatin structure characteristics of pre-miRNA genomic sequences

Shijia Zhu, Qinghua Jiang, Guohua Wang, Bo Liu, Mingxiang Teng, Yadong Wang

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.69 MB

english, 2011

247

Recent and historical recombination in the admixed Norwegian Red cattle breed

Marte Sodeland, Matthew Kent, Ben J Hayes, Harald Grove, Sigbjørn Lien

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 512 KB

english, 2011

248

MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

Bastiaan JH Jansen, Iziah E Sama, Dagmar Eleveld-Trancikova, Maaike A van Hout-Kuijer, Joop H Jansen, Martijn A Huynen, Gosse J Adema

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 992 KB

english, 2011

249

Ploidy influences cellular responses to gross chromosomal rearrangements insaccharomyces cerevisiae

Paul P Jung, Emilie S Fritsch, Corinne Blugeon, Jean-Luc Souciet, Serge Potier, Sophie Lemoine, Joseph Schacherer, Jacky de Montigny

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 698 KB

english, 2011

250

Directional RNA deep sequencing sheds new light on the transcriptional response ofAnabaenasp. strain PCC 7120 to combined-nitrogen deprivation

Britt L Flaherty, F Van Nieuwerburgh, Steven R Head, James W Golden

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 518 KB

english, 2011

251

Influence of cell cycle on responses of MCF-7 cells to benzo[a]pyrene

Hamza Hamouchene, Volker M Arlt, Ian Giddings, David H Phillips

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.63 MB

english, 2011

252

Complete genome sequence of the filamentous anoxygenic phototrophic bacteriumChloroflexus aurantiacus

Kuo-Hsiang Tang, Kerrie Barry, Olga Chertkov, Eileen Dalin, Cliff S Han, Loren J Hauser, Barbara M Honchak, Lauren E Karbach, Miriam L Land, Alla Lapidus, Frank W Larimer, Natalia Mikhailova, Samuel P

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.38 MB

english, 2011

253

InterMitoBase: An annotated database and analysis platform of protein-protein interactions for human mitochondria

Zuguang Gu, Jie Li, Song Gao, Ming Gong, Junling Wang, Hua Xu, Chenyu Zhang, Jin Wang

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.97 MB

english, 2011

254

Genome-wide expression quantitative trait loci (eQTL) analysis in maize

Beth Holloway, Stanley Luck, Mary Beatty, J-Antoni Rafalski, Bailin Li

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.76 MB

english, 2011

255

Identification and characterization of microRNAs fromPhaeodactylum tricornutumby high-throughput sequencing and bioinformatics analysis

Aiyou Huang, Linwen He, Guangce Wang

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.30 MB

english, 2011

256

RsaIrepetitive DNA in BuffaloBubalus bubalisrepresenting retrotransposons, conserved in bovids, are part of the functional genes

Deepali Pathak, Sher Ali

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1000 KB

english, 2011

257

A selective sweep of >8 Mb on chromosome 26 in the Boxer genome

Javier Quilez, Andrea D Short, Verónica Martínez, Lorna J Kennedy, William Ollier, Armand Sanchez, Laura Altet, Olga Francino

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 739 KB

english, 2011

258

Divergent responses to peptidoglycans derived from differentE. coliserotypes influence inflammatory outcome in trout,Oncorhynchus mykiss, macrophages

Sebastian Boltaña, Felipe Reyes-Lopez, Davinia Morera, Frederick Goetz, Simon A MacKenzie

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 778 KB

english, 2011

259

Immunogenicity of autoantigens

Christina Backes, Nicole Ludwig, Petra Leidinger, Christian Harz, Jana Hoffmann, Andreas Keller, Eckart Meese, Hans-Peter Lenhof

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.50 MB

english, 2011

260

RASOnD - A comprehensive resource and search tool for RAS superfamily oncogenes from various species

Umay Kulsum, Vishwadeep Singh, Sujata Sharma, A Srinivasan, Tej P Singh, Punit Kaur

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.47 MB

english, 2011

261

Identification of lignin genes and regulatory sequences involved in secondary cell wall formation inAcacia auriculiformisandAcacia mangiumviade novotranscriptome sequencing

Melissa ML Wong, Charles H Cannon, Ratnam Wickneswari

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.24 MB

english, 2011

262

An efficient approach to findingSiraitia grosvenoriitriterpene biosynthetic genes by RNA-seq and digital gene expression analysis

Qi Tang, Xiaojun Ma, Changming Mo, Iain W Wilson, Cai Song, Huan Zhao, Yanfang Yang, Wei Fu, Deyou Qiu

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 508 KB

english, 2011

263

Comparative analysis of methods for detecting interacting loci

Li Chen, Guoqiang Yu, Carl D Langefeld, David J Miller, Richard T Guy, Jayaram Raghuram, Xiguo Yuan, David M Herrington, Yue Wang

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.20 MB

english, 2011

264

Gatekeeper of pluripotency: A common Oct4 transcriptional network operates in mouse eggs and embryonic stem cells

Maurizio Zuccotti, Valeria Merico, Michele Bellone, Francesca Mulas, Lucia Sacchi, Paola Rebuzzini, Alessandro Prigione, Carlo A Redi, Riccardo Bellazzi, James Adjaye, Silvia Garagna

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 6.27 MB

english, 2011

265

Transcriptomic response of the red tide dinoflagellate,Karenia brevis, to nitrogen and phosphorus depletion and addition

Jeanine S Morey, Emily A Monroe, Amanda L Kinney, Marion Beal, Jillian G Johnson, Gary L Hitchcock, Frances M Van Dolah

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 501 KB

english, 2011

266

Exome-wide DNA capture and next generation sequencing in domestic and wild species

Ted Cosart, Albano Beja-Pereira, Shanyuan Chen, Sarah B Ng, Jay Shendure, Gordon Luikart

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 461 KB

english, 2011

267

Yersinia enterocolitica palearcticaserobiotype O:3/4 - a successful group of emerging zoonotic pathogens

Julia Batzilla, Uladzimir Antonenka, Dirk Höper, Jürgen Heesemann, Alexander Rakin

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 522 KB

english, 2011

268

Investigating the global genomic diversity ofEscherichia coliusing a multi-genome DNA microarray platform with novel gene prediction strategies

Scott A Jackson, Isha R Patel, Tammy Barnaba, Joseph E LeClerc, Thomas A Cebula

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 4.92 MB

english, 2011

269

Full mitochondrial genome sequences of two endemic Philippine hornbill species (Aves: Bucerotidae) provide evidence for pervasive mitochondrial DNA recombination

Svenja Sammler, Christoph Bleidorn, Ralph Tiedemann

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 628 KB

english, 2011

270

Genome-wide SNP discovery in tetraploid alfalfa using 454 sequencing and high resolution melting analysis

Yuanhong Han, Yun Kang, Ivone Torres-Jerez, Foo Cheung, Christopher D Town, Patrick X Zhao, Michael K Udvardi, Maria J Monteros

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 4.02 MB

english, 2011

271

Generating libraries of iTol2-end insertions at BAC ends usingloxPandlox511Tn10 transposons

Leighcraft A Shakes, Gembu Abe, Mugtaba A Eltayeb, Hope M Wolf, Koichi Kawakami, Pradeep K Chatterjee

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.19 MB

english, 2011

272

Single-nucleotide polymorphism discovery by high-throughput sequencing in sorghum

James C Nelson, Shichen Wang, Yuye Wu, Xianran Li, Ginny Antony, Frank F White, Jianming Yu

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.67 MB

english, 2011

273

The differential disease regulome

Geir K Sandve, Sveinung Gundersen, Halfdan Rydbeck, Ingrid K Glad, Lars Holden, Marit Holden, Knut Liestøl, Trevor Clancy, Finn Drabløs, Egil Ferkingstad, Morten Johansen, Vegard Nygaard, Eivind Tøste

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.42 MB

english, 2011

274

Construction of an American mink Bacterial Artificial Chromosome (BAC) library and sequencing candidate genes important for the fur industry

Razvan Anistoroaei, Boudewijn ten Hallers, Michael Nefedov, Knud Christensen, Pieter de Jong

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 368 KB

english, 2011

275

An RNA interference screen for identifying downstream effectors of the p53 and pRB tumour suppressor pathways involved in senescence

Emilie Rovillain, Louise Mansfield, Christopher J Lord, Alan Ashworth, Parmjit S Jat

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.99 MB

english, 2011

276

Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems

Martín Calviño, Rémy Bruggmann, Joachim Messing

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.13 MB

english, 2011

277

A comprehensive characterization of the caspase gene family in insects from the order Lepidoptera

Juliette Courtiade, Yannick Pauchet, Heiko Vogel, David G Heckel

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.45 MB

english, 2011

278

Identification of alternative splice variants inAspergillus flavusthrough comparison of multiple tandem MS search algorithms

Kung-Yen Chang, David C Muddiman

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.27 MB

english, 2011

279

Gene discovery by genome-wide CDS re-prediction and microarray-based transcriptional analysis in phytopathogenXanthomonas campestris

Lian Zhou, Frank-Jörg Vorhölter, Yong-Qiang He, Bo-Le Jiang, Ji-Liang Tang, Yuquan Xu, Alfred Pühler, Ya-Wen He

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 710 KB

english, 2011

280

Global analysis of estrogen receptor beta binding to breast cancer cell genome reveals an extensive interplay with estrogen receptor alpha for target gene regulation

Oli MV Grober, Margherita Mutarelli, Giorgio Giurato, Maria Ravo, Luigi Cicatiello, Maria Rosaria De Filippo, Lorenzo Ferraro, Giovanni Nassa, Maria Francesca Papa, Ornella Paris, Roberta Tarallo, Shu

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.43 MB

english, 2011

281

Gene discovery using next-generation pyrosequencing to develop ESTs forPhalaenopsisorchids

Yu-Yun Hsiao, Yun-Wen Chen, Shi-Ching Huang, Zhao-Jun Pan, Chih-Hsiung Fu, Wen-Huei Chen, Wen-Chieh Tsai, Hong-Hwa Chen

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 400 KB

english, 2011

282

Leaderless genes in bacteria: clue to the evolution of translation initiation mechanisms in prokaryotes

Xiaobin Zheng, Gang-Qing Hu, Zhen-Su She, Huaiqiu Zhu

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 677 KB

english, 2011

283

Large scale genome-wide association and LDLA mapping study identifies QTLs for boar taint and related sex steroids

Eli Grindflek, Sigbjørn Lien, Hanne Hamland, Marianne HS Hansen, Matthew Kent, Maren van Son, Theo HE Meuwissen

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.07 MB

english, 2011

284

Transcriptomic analysis of grain amaranth (Amaranthus hypochondriacus) using 454 pyrosequencing: comparison withA. tuberculatus, expression profiling in stems and in response to biotic and abiotic stress

John P Délano-Frier, Hamlet Avilés-Arnaut, Kena Casarrubias-Castillo, Gabriela Casique-Arroyo, Paula A Castrillón-Arbeláez, Luis Herrera-Estrella, Julio Massange-Sánchez, Norma A Martínez-Gallardo, Fa

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 446 KB

english, 2011

285

Somatic sex-specific transcriptome differences in Drosophila revealed by whole transcriptome sequencing

Peter L Chang, Joseph P Dunham, Sergey V Nuzhdin, Michelle N Arbeitman

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 4.58 MB

english, 2011

286

Integration of Genome-Wide Computation DRE Search, AhR ChIP-chip and Gene Expression Analyses of TCDD-Elicited Responses in the Mouse Liver

Edward Dere, Raymond Lo, Trine Celius, Jason Matthews, Timothy R Zacharewski

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.73 MB

english, 2011

287

EuroPineDB: a high-coverage web database for maritime pine transcriptome

Noé Fernández-Pozo, Javier Canales, Darío Guerrero-Fernández, David P Villalobos, Sara M Díaz-Moreno, Rocío Bautista, Arantxa Flores-Monterroso, M Ángeles Guevara, Pedro Perdiguero, Carmen Collada, M

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.38 MB

english, 2011

288

Identification of drought-responsive microRNAs inMedicago truncatulaby genome-wide high-throughput sequencing

Tianzuo Wang, Lei Chen, Mingui Zhao, Qiuying Tian, Wen-Hao Zhang

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 647 KB

english, 2011

289

Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine

Emilie Chancerel, Camille Lepoittevin, Grégoire Le Provost, Yao-Cheng Lin, Juan Pablo Jaramillo-Correa, Andrew J Eckert, Jill L Wegrzyn, Diana Zelenika, Anne Boland, Jean-Marc Frigerio, Philippe Chaum

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 431 KB

english, 2011

290

New genomic resources for switchgrass: a BAC library and comparative analysis of homoeologous genomic regions harboring bioenergy traits

Christopher A Saski, Zhigang Li, Frank A Feltus, Hong Luo

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.28 MB

english, 2011

291

The sex-biased brain: sexual dimorphism in gene expression in two species of songbirds

Sara Naurin, Bengt Hansson, Dennis Hasselquist, Yong-Hwan Kim, Staffan Bensch

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1016 KB

english, 2011

292

Transcriptome characterization and polymorphism detection between subspecies of big sagebrush (Artemisia tridentata)

Prabin Bajgain, Bryce A Richardson, Jared C Price, Richard C Cronn, Joshua A Udall

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.66 MB

english, 2011

293

Evidence for post-transcriptional regulation of clustered microRNAs in Drosophila

Sergei S Ryazansky, Vladimir A Gvozdev, Eugene Berezikov

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.63 MB

english, 2011

294

Detection of copy number variations in rice using array-based comparative genomic hybridization

Ping Yu, Caihong Wang, Qun Xu, Yue Feng, Xiaoping Yuan, Hanyong Yu, Yiping Wang, Shengxiang Tang, Xinghua Wei

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 493 KB

english, 2011

295

Spontaneous and evolutionary changes in the antibiotic resistance ofBurkholderia cenocepaciaobserved by global gene expression analysis

Andrea Sass, Angela Marchbank, Elizabeth Tullis, John J LiPuma, Eshwar Mahenthiralingam

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 382 KB

english, 2011

296

Quantification of codon selection for comparative bacterial genomics

Adam C Retchless, Jeffrey G Lawrence

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 778 KB

english, 2011

297

Identification of genomic indels and structural variations using split reads

Zhengdong D Zhang, Jiang Du, Hugo Lam, Alex Abyzov, Alexander E Urban, Michael Snyder, Mark Gerstein

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 744 KB

english, 2011

298

Comparative high-throughput transcriptome sequencing and development of SiESTa, theSileneEST annotation database

Nicolas Blavet, Delphine Charif, Christine Oger-Desfeux, Gabriel AB Marais, Alex Widmer

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 436 KB

english, 2011

299

Systematic discovery of unannotated genes in 11 yeast species using a database of orthologous genomic segments

Seán S ÓhÉigeartaigh, David Armisén, Kevin P Byrne, Kenneth H Wolfe

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.10 MB

english, 2011

300

A gene-rich, transcriptionally active environment and the pre-deposition of repressive marks are predictive of susceptibility to KRAB/KAP1-mediated silencing

Sylvain Meylan, Anna C Groner, Giovanna Ambrosini, Nirav Malani, Simon Quenneville, Nadine Zangger, Adamandia Kapopoulou, Annamaria Kauzlaric, Jacques Rougemont, Angela Ciuffi, Frederic D Bushman, Phi

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 599 KB

english, 2011

301

Sequencing of a QTL-rich region of theTheobroma cacaogenome using pooled BACs and the identification of trait specific candidate genes

Frank A Feltus, Christopher A Saski, Keithanne Mockaitis, Niina Haiminen, Laxmi Parida, Zachary Smith, James Ford, Margaret E Staton, Stephen P Ficklin, Barbara P Blackmon, Chun-Huai Cheng, Raymond J

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 572 KB

english, 2011

302

Carbohydrate-active enzymes from the zygomycete fungusRhizopus oryzae: a highly specialized approach to carbohydrate degradation depicted at genome level

Evy Battaglia, Isabelle Benoit, Joost van den Brink, Ad Wiebenga, Pedro M Coutinho, Bernard Henrissat, Ronald P de Vries

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.12 MB

english, 2011

303

Detection of segregation distortion loci in triticale (xTriticosecaleWittmack) based on a high-density DArT marker consensus genetic linkage map

Katharina V Alheit, Jochen C Reif, Hans Peter Maurer, Volker Hahn, Elmar A Weissmann, Thomas Miedaner, Tobias Würschum

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.96 MB

english, 2011

304

Combined analysis of transcriptome and metabolite data reveals extensive differences between black and brown nearly-isogenic soybean (Glycine max) seed coats enabling the identification of pigment isogenes

Nik Kovinich, Ammar Saleem, John T Arnason, Brian Miki

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 516 KB

english, 2011

305

Addressing challenges in the production and analysis of illumina sequencing data

Martin Kircher, Patricia Heyn, Janet Kelso

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 745 KB

english, 2011

306

Comparative analysis of two completeCorynebacterium ulceransgenomes and detection of candidate virulence factors

Eva Trost, Arwa Al-Dilaimi, Panagiotis Papavasiliou, Jessica Schneider, Prisca Viehoever, Andreas Burkovski, Siomar C Soares, Sintia S Almeida, Fernanda A Dorella, Anderson Miyoshi, Vasco Azevedo, Mar

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 976 KB

english, 2011

307

Temperature stress differentially modulates transcription in meiotic anthers of heat-tolerant and heat-sensitive tomato plants

Craita E Bita, Sara Zenoni, Wim H Vriezen, Celestina Mariani, Mario Pezzotti, Tom Gerats

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 9.50 MB

english, 2011

308

Comparative analyses imply that the enigmatic sigma factor 54 is a central controller of the bacterial exterior

Christof Francke, Tom Groot Kormelink, Yanick Hagemeijer, Lex Overmars, Vincent Sluijter, Roy Moezelaar, Roland J Siezen

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.63 MB

english, 2011

309

Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae

Pablo F Cavagnaro, Sang-Min Chung, Sylvie Manin, Mehtap Yildiz, Aamir Ali, Maria S Alessandro, Massimo Iorizzo, Douglas A Senalik, Philipp W Simon

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 551 KB

english, 2011

310

Transcript profiling ofcrown rootless1mutant stem base reveals new elements associated with crown root development in rice

Yoan Coudert, Martine Bès, Thi Van Anh Le, Martial Pré, Emmanuel Guiderdoni, Pascal Gantet

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.27 MB

english, 2011

311

Large-scale RNAi screen of G protein-coupled receptors involved in larval growth, molting and metamorphosis in the red flour beetle

Hua Bai, Fang Zhu, Kapil Shah, Subba Reddy Palli

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 438 KB

english, 2011

312

De novoassembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity

Massimo Iorizzo, Douglas A Senalik, Dariusz Grzebelus, Megan Bowman, Pablo F Cavagnaro, Marta Matvienko, Hamid Ashrafi, Allen Van Deynze, Philipp W Simon

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 307 KB

english, 2011

313

Global gene expression ofPoncirus trifoliata,Citrus sunkiand their hybrids under infection ofPhytophthora parasitica

Leonardo P Boava, Mariângela Cristofani-Yaly, Valéria S Mafra, Karen Kubo, Luciano T Kishi, Marco A Takita, Marcelo Ribeiro-Alves, Marcos A Machado

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 937 KB

english, 2011

314

Genome-wide survey of yeast mutations leading to activation of the yeast cell integrity MAPK pathway: Novel insights into diverse MAPK outcomes

Patricia Arias, Sonia Díez-Muñiz, Raúl García, César Nombela, José M Rodríguez-Peña, Javier Arroyo

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.06 MB

english, 2011

315

Artemisinin resistance inPlasmodium falciparumis associated with an altered temporal pattern of transcription

Sachel Mok, Mallika Imwong, Margaret J Mackinnon, Joan Sim, Ramya Ramadoss, Poravuth Yi, Mayfong Mayxay, Kesinee Chotivanich, Kek-Yee Liong, Bruce Russell, Duong Socheat, Paul N Newton, Nicholas PJ Da

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.81 MB

english, 2011

316

Monophyly of clade III nematodes is not supported by phylogenetic analysis of complete mitochondrial genome sequences

Joong-Ki Park, Tahera Sultana, Sang-Hwa Lee, Seokha Kang, Hyong Kyu Kim, Gi-Sik Min, Keeseon S Eom, Steven A Nadler

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 365 KB

english, 2011

317

Analysis of the melon (Cucumis melo) small RNAome by high-throughput pyrosequencing

Daniel Gonzalez-Ibeas, José Blanca, Livia Donaire, Montserrat Saladié, Albert Mascarell-Creus, Ana Cano-Delgado, Jordi Garcia-Mas, Cesar Llave, Miguel A Aranda

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 861 KB

english, 2011

318

Mitochondrial genome deletions and minicircles are common in lice (Insecta: Phthiraptera)

Stephen L Cameron, Kazunori Yoshizawa, Atsushi Mizukoshi, Michael F Whiting, Kevin P Johnson

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 324 KB

english, 2011

319

Complete genome sequence ofBrachyspira intermediareveals unique genomic features inBrachyspiraspecies and phage-mediated horizontal gene transfer

Therese Håfström, Désirée S Jansson, Bo Segerman

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.07 MB

english, 2011

320

Syntenic relationships between cucumber (Cucumis sativusL.) and melon (C. meloL.) chromosomes as revealed by comparative genetic mapping

Dawei Li, Hugo E Cuevas, Luming Yang, Yuhong Li, Jordi Garcia-Mas, Juan Zalapa, Jack E Staub, Feishi Luan, Umesh Reddy, Xiaoming He, Zhenhui Gong, Yiqun Weng

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 317 KB

english, 2011

321

A codon substitution model that incorporates the effect of the GC contents, the gene density and the density of CpG islands of human chromosomes

Kazuharu Misawa

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 199 KB

english, 2011

322

Transcription analysis on response of swine lung to H1N1 swine influenza virus

Yongtao Li, Hongbo Zhou, Zhibin Wen, Shujuan Wu, Canhui Huang, Guangmin Jia, Huanchun Chen, Meilin Jin

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.01 MB

english, 2011

323

A genomic biomarker signature can predict skin sensitizers using a cell-basedin vitroalternative to animal tests

Henrik Johansson, Malin Lindstedt, Ann-Sofie Albrekt, Carl AK Borrebaeck

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.07 MB

english, 2011

324

Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley

Yada Chutimanitsakun, Rick W Nipper, Alfonso Cuesta-Marcos, Luis Cistué, Ann Corey, Tanya Filichkina, Eric A Johnson, Patrick M Hayes

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 416 KB

english, 2011

325

Combining blue native polyacrylamide gel electrophoresis with liquid chromatography tandem mass spectrometry as an effective strategy for analyzing potential membrane protein complexes ofMycobacterium bovisbacillus Calmette-Guérin

Jianhua Zheng, Candong Wei, Lina Zhao, Liguo Liu, Wenchuan Leng, Weijun Li, Qi Jin

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 584 KB

english, 2011

326

Complete genome and comparative analysis ofStreptococcus gallolyticussubsp.gallolyticus, an emerging pathogen of infective endocarditis

Dennis Hinse, Tanja Vollmer, Christian Rückert, Jochen Blom, Jörn Kalinowski, Cornelius Knabbe, Jens Dreier

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 590 KB

english, 2011

327

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

Nabil-Fareed Alikhan, Nicola K Petty, Nouri L Ben Zakour, Scott A Beatson

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.23 MB

english, 2011

328

The mosaicism of plasmids revealed by atypical genes detection and analysis

Emanuele Bosi, Renato Fani, Marco Fondi

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 435 KB

english, 2011

329

Differential gene expression in male and female rainbow trout embryos prior to the onset of gross morphological differentiation of the gonads

Matthew C Hale, Peng Xu, Julie Scardina, Paul A Wheeler, Gary H Thorgaard, Krista M Nichols

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.35 MB

english, 2011

330

Transcriptional responses to glucose inSaccharomyces cerevisiaestrains lacking a functional protein kinase A

Daniela Livas, Marinka JH Almering, Jean-Marc Daran, Jack T Pronk, Juana M Gancedo

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 495 KB

english, 2011

331

Identification, analysis, and linkage mapping of expressed sequence tags from the Australian sheep blowfly

Siu F Lee, Zhenzhong Chen, Annette McGrath, Robert T Good, Philip Batterham

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 776 KB

english, 2011

332

New algorithm improves fine structure of the barley consensus SNP map

Jeffrey B Endelman

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 550 KB

english, 2011

333

Genome-wide association analysis of thirty one production, health, reproduction and body conformation traits in contemporary U.S. Holstein cows

John B Cole, George R Wiggans, Li Ma, Tad S Sonstegard, Thomas J Lawlor, Brian A Crooker, Curtis P Van Tassell, Jing Yang, Shengwen Wang, Lakshmi K Matukumalli, Yang Da

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 492 KB

english, 2011

334

Genomic insights into the versatility of the plant growth-promoting bacteriumAzospirillum amazonense

Fernando H Sant’Anna, Luiz GP Almeida, Ricardo Cecagno, Luciano A Reolon, Franciele M Siqueira, Maicon RS Machado, Ana TR Vasconcelos, Irene S Schrank

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 683 KB

english, 2011

335

TheZea maysmutantsopaque-2andopaque-7disclose extensive changes in endosperm metabolism as revealed by protein, amino acid, and transcriptome-wide analyses

Hans Hartings, Massimiliano Lauria, Nadia Lazzaroni, Raul Pirona, Mario Motto

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.26 MB

english, 2011

336

Attenuation of virulence in an apicomplexan hemoparasite results in reduced genome diversity at the population level

Audrey OT Lau, Ananth Kalyanaraman, Ignacio Echaide, Guy H Palmer, Russell Bock, Monica J Pedroni, Meenakshi Rameshkumar, Mariano B Ferreira, Taryn I Fletcher, Terry F McElwain

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 850 KB

english, 2011

337

Histological and transcriptome-wide level characteristics of fetal myofiber hyperplasia during the second half of gestation in Texel and Ujumqin sheep

Hangxing Ren, Li Li, Hongwei Su, Lingyang Xu, Caihong Wei, Li Zhang, Hongbin Li, Wenzhong Liu, Lixin Du

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 588 KB

english, 2011

338

Gene expression profiling of human whole blood samples with the Illumina WG-DASL assay

Mary E Winn, Marian Shaw, Craig April, Brandy Klotzle, Jian-Bing Fan, Sarah S Murray, Nicholas J Schork

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.02 MB

english, 2011

339

A genetically anchored physical framework forTheobroma cacaocv. Matina 1-6

Christopher A Saski, Frank A Feltus, Margaret E Staton, Barbara P Blackmon, Stephen P Ficklin, David N Kuhn, Raymond J Schnell, Howard Shapiro, Juan Carlos Motamayor

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 748 KB

english, 2011

340

A high-resolution integrated map of copy number polymorphisms within and between breeds of the modern domesticated dog

Thomas J Nicholas, Carl Baker, Evan E Eichler, Joshua M Akey

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 497 KB

english, 2011

341

The non-random clustering of non-synonymous substitutions and its relationship to evolutionary rate

Lisa G McFerrin, Eric A Stone

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 317 KB

english, 2011

342

Tight associations between transcription promoter type and epigenetic variation in histone positioning and modification

Tadasu Nozaki, Nozomu Yachie, Ryu Ogawa, Anton Kratz, Rintaro Saito, Masaru Tomita

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 309 KB

english, 2011

343

Transcriptome profiling of sheep granulosa cells and oocytes during early follicular development obtained by Laser Capture Microdissection

Agnes Bonnet, Claudia Bevilacqua, Francis Benne, Loys Bodin, Corinne Cotinot, Laurence Liaubet, Magali Sancristobal, Julien Sarry, Elena Terenina, Patrice Martin, Gwenola Tosser-Klopp, Beatrice Mandon

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 607 KB

english, 2011

344

Accuracy and differential bias in copy number measurement ofCCL3L1in association studies with three auto-immune disorders

Danielle Carpenter, Susan Walker, Natalie Prescott, Joost Schalkwijk, John AL Armour

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 255 KB

english, 2011

345

SAMQA: error classification and validation of high-throughput sequenced read data

Thomas Robinson, Sarah Killcoyne, Ryan Bressler, John Boyle

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 347 KB

english, 2011

346

Next-generation sequencing for HLA typing of class I loci

Rachel L Erlich, Xiaoming Jia, Scott Anderson, Eric Banks, Xiaojiang Gao, Mary Carrington, Namrata Gupta, Mark A DePristo, Matthew R Henn, Niall J Lennon, Paul IW de Bakker

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 6.08 MB

english, 2011

347

Transcriptomic analysis supports similar functional roles for the two thymuses of the tammar wallaby

Emily SW Wong, Anthony T Papenfuss, Andreas Heger, Arthur L Hsu, Chris P Ponting, Robert D Miller, Jane C Fenelon, Marilyn B Renfree, Richard A Gibbs, Katherine Belov

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 396 KB

english, 2011

348

The tammar wallaby major histocompatibility complex shows evidence of past genomic instability

Hannah V Siddle, Janine E Deakin, Penny Coggill, Laurens Whilming, Jennifer Harrow, Jim Kaufman, Stephan Beck, Katherine Belov

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.41 MB

english, 2011

349

A first-generation integrated tammar wallaby map and its use in creating a tammar wallaby first-generation virtual genome map

Chenwei Wang, Janine E Deakin, Willem Rens, Kyall R Zenger, Katherine Belov, Jennifer A Marshall Graves, Frank W Nicholas

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 300 KB

english, 2011

350

Testing the importance of jasmonate signalling in induction of plant defences upon cabbage aphid (Brevicoryne brassicae) attack

Anna Kuśnierczyk, Diem HT Tran, Per Winge, Tommy S Jørstad, John C Reese, Joanna Troczyńska, Atle M Bones

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 876 KB

english, 2011

351

Determination of the melon chloroplast and mitochondrial genome sequences reveals that the largest reported mitochondrial genome in plants contains a significant amount of DNA having a nuclear origin

Luis Rodríguez-Moreno, Víctor M González, Andrej Benjak, M Carmen Martí, Pere Puigdomènech, Miguel A Aranda, Jordi Garcia-Mas

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 571 KB

english, 2011

352

Genome sequencing reveals diversification of virulence factor content and possible host adaptation in distinct subpopulations ofSalmonella enterica

Henk C den Bakker, Andrea I Moreno Switt, Gregory Govoni, Craig A Cummings, Matthew L Ranieri, Lovorka Degoricija, Karin Hoelzer, Lorraine D Rodriguez-Rivera, Stephanie Brown, Elena Bolchacova, Manoha

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 370 KB

english, 2011

353

Drosophilaselenophosphate synthetase 1 regulates vitamin B6 metabolism: prediction and confirmation

Kwang Hee Lee, Myoung Sup Shim, Jin Young Kim, Hee Kyoung Jung, Eunji Lee, Bradley A Carlson, Xue-Ming Xu, Jin Mo Park, Dolph L Hatfield, Taesung Park, Byeong Jae Lee

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 496 KB

english, 2011

354

A quantitative account of genomic island acquisitions in prokaryotes

Tom E Roos, Mark WJ van Passel

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 264 KB

english, 2011

355

Deep sequencing reveals as-yet-undiscovered small RNAs inEscherichia coli

Atsuko Shinhara, Motomu Matsui, Kiriko Hiraoka, Wataru Nomura, Reiko Hirano, Kenji Nakahigashi, Masaru Tomita, Hirotada Mori, Akio Kanai

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.15 MB

english, 2011

356

Datgan, a reusable software system for facile interrogation and visualization of complex transcription profiling data

Gareth R Howell, David O Walton, Benjamin L King, Richard T Libby, Simon WM John

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.15 MB

english, 2011

357

MMP1bimodal expression and differential response to inflammatory mediators is linked to promoter polymorphisms

Muna Affara, Benjamin J Dunmore, Deborah A Sanders, Nicola Johnson, Cristin G Print, D Stephen Charnock-Jones

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.94 MB

english, 2011

358

Whole-genome phylogenies of the familyBacillaceaeand expansion of the sigma factor gene family in theBacilluscereusspecies-group

Timothy R Schmidt, Edgar J Scott, David W Dyer

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 501 KB

english, 2011

359

Differential transcriptomic profiles effected by oil palm phenolics indicate novel health outcomes

Soon-Sen Leow, Devi Shamala Sekaran, Kalyana Sundram, YewAi Tan, Ravigadevi Sambanthamurthi

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.04 MB

english, 2011

360

Analysis of human meiotic recombination events with a parent-sibling tracing approach

Yun-Shien Lee, Angel Chao, Chun-Houh Chen, Tina Chou, Shih-Yee Mimi Wang, Tzu-Hao Wang

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 312 KB

english, 2011

361

Analysis of high-identity segmental duplications in the grapevine genome

Giuliana Giannuzzi, Pietro D’Addabbo, Marica Gasparro, Maurizio Martinelli, Francesco N Carelli, Donato Antonacci, Mario Ventura

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 370 KB

english, 2011

362

A eukaryotic-type signalling system ofPseudomonas aeruginosacontributes to oxidative stress resistance, intracellular survival and virulence

Jana Goldová, Aleš Ulrych, Kamil Hercík, Pavel Branny

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 389 KB

english, 2011

363

Genomic analysis and temperature-dependent transcriptome profiles of the rhizosphere originating strainPseudomonas aeruginosaM18

Da-Qiang Wu, Jing Ye, Hong-Yu Ou, Xue Wei, Xianqing Huang, Ya-Wen He, Yuquan Xu

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.08 MB

english, 2011

364

Tissue-specific gene expression templates for accurate molecular characterization of the normal physiological states of multiple human tissues with implication in development and cancer studies

Pei-Ing Hwang, Huan-Bin Wu, Chin-Di Wang, Bai-Ling Lin, Cheng-Tao Chen, Shinsheng Yuan, Guani Wu, Ker-Chau Li

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 497 KB

english, 2011

365

Ubiquitin-proteasome genes as targets for modulation of cisplatin sensitivity in fission yeast

Laura Gatti, Kwang L Hoe, Jacqueline Hayles, Sabina C Righetti, Nives Carenini, Laura Dal Bo, Dong U Kim, Han O Park, Paola Perego

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 519 KB

english, 2011

366

Retrotransposon-centered analysis of piRNA targeting shows a shift from active to passive retrotransposon transcription in developing mouse testes

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 418 KB

english, 2011

367

Refining transcriptional programs in kidney development by integration of deep RNA-sequencing and array-based spatial profiling

Rathi D Thiagarajan, Nicole Cloonan, Brooke B Gardiner, Tim R Mercer, Gabriel Kolle, Ehsan Nourbakhsh, Shivangi Wani, Dave Tang, Keerthana Krishnan, Kylie M Georgas, Bree A Rumballe, Han S Chiu, Jason

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 813 KB

english, 2011

368

Mitochondrial genomes and Doubly Uniparental Inheritance: new insights fromMusculista senhousiasex-linked mitochondrial DNAs (Bivalvia Mytilidae)

Marco Passamonti, Andrea Ricci, Liliana Milani, Fabrizio Ghiselli

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 703 KB

english, 2011

369

Comprehensive SNP array study of frequently used neuroblastoma cell lines; copy neutral loss of heterozygosity is common in the cell lines but uncommon in primary tumors

Hanna Kryh, Helena Carén, Jennie Erichsen, Rose-Marie Sjöberg, Jonas Abrahamsson, Per Kogner, Tommy Martinsson

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.46 MB

english, 2011

370

WebMGA: a customizable web server for fast metagenomic sequence analysis

Sitao Wu, Zhengwei Zhu, Liming Fu, Beifang Niu, Weizhong Li

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 844 KB

english, 2011

371

A combined functional and structural genomics approach identified an EST-SSR marker with complete linkage to the Ligon lintless-2 genetic locus in cotton (Gossypium hirsutumL.)

Doug J Hinchliffe, Rickie B Turley, Marina Naoumkina, Hee Jin Kim, Yuhong Tang, Kathleen M Yeater, Ping Li, David D Fang

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 646 KB

english, 2011

372

Deep sequencing-based transcriptome analysis ofPlutella xylostellalarvae parasitized byDiadegma semiclausum

Kayvan Etebari, Robin W Palfreyman, David Schlipalius, Lars K Nielsen, Richard V Glatz, Sassan Asgari

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1023 KB

english, 2011

373

A comparative physical map reveals the pattern of chromosomal evolution between the turkey (Meleagris gallopavo) and chicken (Gallus gallus) genomes

Yang Zhang, Xiaojun Zhang, Thomas H O’Hare, William S Payne, Jennifer J Dong, Chantel F Scheuring, Meiping Zhang, James J Huang, Mi-Kyung Lee, Mary E Delany, Hong-Bin Zhang, Jerry B Dodgson

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 574 KB

english, 2011

374

A global view of porcine transcriptome in three tissues from a full-sib pair with extreme phenotypes in growth and fat deposition by paired-end RNA sequencing

Congying Chen, Huashui Ai, Jun Ren, Wanbo Li, Pinghua Li, Ruimin Qiao, Jing Ouyang, Ming Yang, Junwu Ma, Lusheng Huang

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 842 KB

english, 2011

375

Genome-wide expression assay comparison across frozen and fixed postmortem brain tissue samples

Maggie L Chow, Hai-Ri Li, Mary E Winn, Craig April, Cynthia C Barnes, Anthony Wynshaw-Boris, Jian-Bing Fan, Xiang-Dong Fu, Eric Courchesne, Nicholas J Schork

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.38 MB

english, 2011

376

Comparative analysis of information contents relevant to recognition of introns in many species

Hiroaki Iwata, Osamu Gotoh

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.17 MB

english, 2011

377

Updated genome assembly and annotation ofPaenibacillus larvae, the agent of American foulbrood disease of honey bees

Queenie WT Chan, R Scott Cornman, Inanc Birol, Nancy Y Liao, Simon K Chan, T Roderick Docking, Shaun D Jackman, Greg A Taylor, Steven JM Jones, Dirk C de Graaf, Jay D Evans, Leonard J Foster

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1003 KB

english, 2011

378

Characterization of the sesame (Sesamum indicumL.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers

Wenliang Wei, Xiaoqiong Qi, Linhai Wang, Yanxin Zhang, Wei Hua, Donghua Li, Haixia Lv, Xiurong Zhang

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 380 KB

english, 2011

379

Histological and global gene expression analysis of the 'lactating' pigeon crop

Meagan J Gillespie, Volker R Haring, Kenneth A McColl, Paul Monaghan, John A Donald, Kevin R Nicholas, Robert J Moore, Tamsyn M Crowley

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 601 KB

english, 2011

380

Genomic insights into an obligate epibiotic bacterial predator:Micavibrio aeruginosavorusARL-13

Zhang Wang, Daniel E Kadouri, Martin Wu

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 750 KB

english, 2011

381

Characterization of transcriptome dynamics during watermelon fruit development: sequencing, assembly, annotation and gene expression profiles

Shaogui Guo, Jingan Liu, Yi Zheng, Mingyun Huang, Haiying Zhang, Guoyi Gong, Hongju He, Yi Ren, Silin Zhong, Zhangjun Fei, Yong Xu

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 804 KB

english, 2011

382

Spatial analysis of biomineralization associated gene expression from the mantle organ of the pearl oysterPinctada maxima

Luke D Gardner, David Mills, Aaron Wiegand, David Leavesley, Abigail Elizur

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 889 KB

english, 2011

383

Array Comparative Genomic Hybridizations: Assessing the ability to recapture evolutionary relationships using anin silicoapproach

Luz B Gilbert, Lee Chae, Takao Kasuga, John W Taylor

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 323 KB

english, 2011

384

The landscape of inherited andde novocopy number variants in aplasmodium falciparumgenetic cross

Upeka Samarakoon, Joseph M Gonzales, Jigar J Patel, Asako Tan, Lisa Checkley, Michael T Ferdig

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.41 MB

english, 2011

385

Transcriptome analysis and comparison reveal divergence between two invasive whitefly cryptic species

Xiao-Wei Wang, Jun-Bo Luan, Jun-Min Li, Yun-Lin Su, Jun Xia, Shu-Sheng Liu

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 317 KB

english, 2011

386

Transcriptome profiling of immune responses to cardiomyopathy syndrome (CMS) in Atlantic salmon

Gerrit Timmerhaus, Aleksei Krasnov, Pål Nilsen, Marta Alarcon, Sergey Afanasyev, Marit Rode, Harald Takle, Sven Martin Jørgensen

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 905 KB

english, 2011

387

Conserved generation of short products at piRNA loci

Philipp Berninger, Lukasz Jaskiewicz, Mohsen Khorshid, Mihaela Zavolan

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.64 MB

english, 2011

388

Detecting autozygosity through runs of homozygosity: A comparison of three autozygosity detection algorithms

Daniel P Howrigan, Matthew A Simonson, Matthew C Keller

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 345 KB

english, 2011

389

Differential gene expression profiling of human bone marrow-derived mesenchymal stem cells during adipogenic development

Adriane Menssen, Thomas Häupl, Michael Sittinger, Bruno Delorme, Pierre Charbord, Jochen Ringe

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.26 MB

english, 2011

390

Comparative Transcriptomes Profiling of Photoperiod-sensitive Male Sterile Rice Nongken 58S During the Male Sterility Transition between Short-day and Long-day

Wei Wang, Zhenwei Liu, Zhibin Guo, Gaoyuan Song, Qin Cheng, Daiming Jiang, Yingguo Zhu, Daichang Yang

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 556 KB

english, 2011

391

Genome wide gene expression regulation by HIP1 Protein Interactor, HIPPI: Prediction and validation

Moumita Datta, Ananyo Choudhury, Ansuman Lahiri, Nitai P Bhattacharyya

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 738 KB

english, 2011

392

Whole-exome sequencing of DNA from peripheral blood mononuclear cells (PBMC) and EBV-transformed lymphocytes from the same donor

Eric R Londin, Margaret A Keller, Michael R D’Andrea, Kathleen Delgrosso, Adam Ertel, Saul Surrey, Paolo Fortina

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 796 KB

english, 2011

393

Analyses of the oligopeptide transporter gene family in poplar and grape

Jun Cao, Jinling Huang, Yongping Yang, Xiangyang Hu

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.79 MB

english, 2011

394

Nucleosome-coupled expression differences in closely-related species

Yuanfang Guan, Victoria Yao, Kyle Tsui, Marinella Gebbia, Maitreya J Dunham, Corey Nislow, Olga G Troyanskaya

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 782 KB

english, 2011

395

Partial sequencing of the bottle gourd genome reveals markers useful for phylogenetic analysis and breeding

Pei Xu, Xiaohua Wu, Jie Luo, Baogen Wang, Yonghua Liu, Jeffrey D Ehlers, Sha Wang, Zhongfu Lu, Guojing Li

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 307 KB

english, 2011

396

Development of a Pacific oyster (Crassostrea gigas) 31,918-feature microarray: identification of reference genes and tissue-enriched expression patterns

Nolwenn M Dheilly, Christophe Lelong, Arnaud Huvet, Pascal Favrel

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.64 MB

english, 2011

397

Spleen transcriptome response to infection with avian pathogenicEscherichia coliin broiler chickens

Erin E Sandford, Megan Orr, Emma Balfanz, Nate Bowerman, Xianyao Li, Huaijun Zhou, Timothy J Johnson, Subhashinie Kariyawasam, Peng Liu, Lisa K Nolan, Susan J Lamont

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 449 KB

english, 2011

398

Identification ofSchistosoma mansonimicroRNAs

Mariana C Simões, Jonathan Lee, Appolinaire Djikeng, Gustavo C Cerqueira, Adhemar Zerlotini, Rosiane A da Silva-Pereira, Andrew R Dalby, Philip LoVerde, Najib M El-Sayed, Guilherme Oliveira

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.77 MB

english, 2011

399

A physical map ofBrassica oleraceashows complexity of chromosomal changes following recursive paleopolyploidizations

Xiyin Wang, Manuel J Torres, Gary Pierce, Cornelia Lemke, Lisa K Nelson, Bayram Yuksel, John E Bowers, Barry Marler, Yongli Xiao, Lifeng Lin, Ethan Epps, Heidi Sarazen, Carl Rogers, Santhosh Karunakar

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 645 KB

english, 2011

400

Genome-wide analysis of WRKY gene family inCucumis sativus

Jian Ling, Weijie Jiang, Ying Zhang, Hongjun Yu, Zhenchuan Mao, Xingfang Gu, Sanwen Huang, Bingyan Xie

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.22 MB

english, 2011

401

Transcriptional responses ofBurkholderia cenocepaciato polymyxin B in isogenic strains with diverse polymyxin B resistance phenotypes

Slade A Loutet, Flaviana Di Lorenzo, Chelsea Clarke, Antonio Molinaro, Miguel A Valvano

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.01 MB

english, 2011

402

Detection of growth-related QTL in turbot (Scophthalmus maximus)

Enrique Sánchez-Molano, Alex Cerna, Miguel A Toro, Carmen Bouza, Miguel Hermida, Belén G Pardo, Santiago Cabaleiro, Jesús Fernández, Paulino Martínez

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 188 KB

english, 2011

403

High degree of sex chromosome differentiation in stickleback fishes

Takahito Shikano, Heini M Natri, Yukinori Shimada, Juha Merilä

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 284 KB

english, 2011

404

Genome-wide examination of the transcriptional response to ecdysteroids 20-hydroxyecdysone and ponasterone A inDrosophila melanogaster

Sarah E Gonsalves, Scott J Neal, Amy S Kehoe, J Timothy Westwood

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 391 KB

english, 2011

405

Deciphering c-MYC-regulated genes in two distinct tissues

Samuel C Robson, Lesley Ward, Helen Brown, Heather Turner, Ewan Hunter, Stella Pelengaris, Michael Khan

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 705 KB

english, 2011

406

An attenuated strain ofBacillus anthracis(CDC 684) has a large chromosomal inversion and altered growth kinetics

Richard T Okinaka, Erin P Price, Spenser R Wolken, Jeffrey M Gruendike, Wai Kwan Chung, Talima Pearson, Gary Xie, Chris Munk, Karen K Hill, Jean Challacombe, Bruce E Ivins, James M Schupp, Stephen M B

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 355 KB

english, 2011

407

TheCryptosporidium parvumKinome

Jennifer D Artz, Amy K Wernimont, Abdellah Allali-Hassani, Yong Zhao, Mehrnaz Amani, Yu-Hui Lin, Guillermo Senisterra, Gregory A Wasney, Oleg Fedorov, Oliver King, Annette Roos, Vlad V Lunin, Wei Qiu,

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.69 MB

english, 2011

408

Single-nucleotide resolution analysis of the transcriptome structure ofClostridium beijerinckiiNCIMB 8052 using RNA-Seq

Yi Wang, Xiangzhen Li, Yuejian Mao, Hans P Blaschek

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 406 KB

english, 2011

409

A second generation genetic map of the bumblebeeBombus terrestris(Linnaeus, 1758) reveals slow genome and chromosome evolution in the Apidae

Eckart Stolle, Lena Wilfert, Regula Schmid-Hempel, Paul Schmid-Hempel, Michael Kube, Richard Reinhardt, Robin FA Moritz

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.01 MB

english, 2011

410

Transcriptome profiling ofPinus radiatajuvenile wood with contrasting stiffness identifies putative candidate genes involved in microfibril orientation and cell wall mechanics

Xinguo Li, Harry X Wu, Simon G Southerton

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 342 KB

english, 2011

411

Sequence comparison of prefrontal cortical brain transcriptome from a tame and an aggressive silver fox (Vulpes vulpes)

Anna V Kukekova, Jennifer L Johnson, Clotilde Teiling, Lewyn Li, Irina N Oskina, Anastasiya V Kharlamova, Rimma G Gulevich, Ravee Padte, Michael M Dubreuil, Anastasiya V Vladimirova, Darya V Shepeleva

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 839 KB

english, 2011

412

Genome-wide distribution of genetic diversity and linkage disequilibrium in elite sugar beet germplasm

Jinquan Li, Ann-Katrin Lühmann, Knuth Weißleder, Benjamin Stich

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 416 KB

english, 2011

413

New resources for functional analysis of omics data for the genusAspergillus

Benjamin M Nitsche, Jonathan Crabtree, Gustavo C Cerqueira, Vera Meyer, Arthur FJ Ram, Jennifer R Wortman

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 418 KB

english, 2011

414

Array CGH Phylogeny: How accurate are Comparative Genomic Hybridization-based trees?

Luz B Gilbert, Takao Kasuga, N Louise Glass, John W Taylor

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 261 KB

english, 2011

415

Effects of elevated seawaterpCO2on gene expression patterns in the gills of the green crab,Carcinus maenas

Sandra Fehsenfeld, Rainer Kiko, Yasmin Appelhans, David W Towle, Martin Zimmer, Frank Melzner

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 825 KB

english, 2011

416

Physical properties of naked DNA influence nucleosome positioning and correlate with transcription start and termination sites in yeast

Özgen Deniz, Oscar Flores, Federica Battistini, Alberto Pérez, Montserrat Soler-López, Modesto Orozco

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 678 KB

english, 2011

417

Transcriptome profiling of the rice blast fungus during invasive plant infection andin vitrostresses

Sandra M Mathioni, André Beló, Christopher J Rizzo, Ralph A Dean, Nicole M Donofrio

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.53 MB

english, 2011

418

Skin healing and scale regeneration in fed and unfed sea bream,Sparus auratus

Florbela A Vieira, Silvia F Gregório, Serena Ferraresso, Michael AS Thorne, Rita Costa, Massimo Milan, Luca Bargelloni, Melody S Clark, Adelino VM Canario, Deborah M Power

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 861 KB

english, 2011

419

Genome-wide identification and characterization of ATP-binding cassette transporters in the silkworm,Bombyx mori

Shumin Liu, Shun Zhou, Ling Tian, Enen Guo, Yunxia Luan, Jianzhen Zhang, Sheng Li

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 681 KB

english, 2011

420

Effect of the down-regulation of the highGrain Protein Content(GPC) genes on the wheat transcriptome during monocarpic senescence

Dario Cantu, Stephen P Pearce, Assaf Distelfeld, Michael W Christiansen, Cristobal Uauy, Eduard Akhunov, Tzion Fahima, Jorge Dubcovsky

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 587 KB

english, 2011

421

Genomic and proteomic analyses ofMycobacterium bovisBCG Mexico 1931 reveal a diverse immunogenic repertoire against tuberculosis infection

Patricia Orduña, Miguel A Cevallos, Samuel Ponce de León, Adriana Arvizu, Ismael L Hernández-González, Guillermo Mendoza-Hernández, Yolanda López-Vidal

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 755 KB

english, 2011

422

Comparative analysis of neural transcriptomes and functional implication of unannotated intronic expression

Yazhou Sun, Yaqiong Wang, Yi Hu, Gong Chen, Hong Ma

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.71 MB

english, 2011

423

Establishing the baseline level of repetitive element expression in the human cortex

Svitlana Tyekucheva, Robert H Yolken, W Richard McCombie, Jennifer Parla, Melissa Kramer, Sarah J Wheelan, Sarven Sabunciyan

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 991 KB

english, 2011

424

Nutrigenomics in honey bees: digital gene expression analysis of pollen's nutritive effects on healthy and varroa-parasitized bees

Cédric Alaux, Christelle Dantec, Hughes Parrinello, Yves Le Conte

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 662 KB

english, 2011

425

Mitochondrial genome sequencing helps show the evolutionary mechanism of mitochondrial genome formation inBrassica

Shengxin Chang, Tiantian Yang, Tongqing Du, Yongjuan Huang, Jianmei Chen, Jiyong Yan, Jianbo He, Rongzhan Guan

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 553 KB

english, 2011

426

Transcriptomic analysis of the interaction betweenHelianthus annuusand its obligate parasitePlasmopara halstediishows single nucleotide polymorphisms in CRN sequences

Falah As-sadi, Sébastien Carrere, Quentin Gascuel, Thibaut Hourlier, David Rengel, Marie-Christine Le Paslier, Amandine Bordat, Marie-Claude Boniface, Dominique Brunel, Jérôme Gouzy, Laurence Godiard,

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.41 MB

english, 2011

427

Regional genome transcriptional response of adult mouse brain to hypoxia

Huichun Xu, Aigang Lu, Frank R Sharp

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 816 KB

english, 2011

428

The 'PUCE CAFE' Project: the First 15K Coffee Microarray, a New Tool for Discovering Candidate Genes correlated to Agronomic and Quality Traits

Isabelle Privat, Amélie Bardil, Aureliano Bombarely Gomez, Dany Severac, Christelle Dantec, Ivanna Fuentes, Lukas Mueller, Thierry Joët, David Pot, Séverine Foucrier, Stéphane Dussert, Thierry Leroy,

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.01 MB

english, 2011

429

False negative rates inDrosophilacell-based RNAi screens: a case study

Matthew Booker, Anastasia A Samsonova, Young Kwon, Ian Flockhart, Stephanie E Mohr, Norbert Perrimon

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.57 MB

english, 2011

430

Analysis of conserved microRNAs in floral tissues of sexual and apomicticBoecheraspecies

Samuel Amiteye, José M Corral, Heiko Vogel, Timothy F Sharbel

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 429 KB

english, 2011

431

Temporal transcriptome changes induced by MDV in marek's disease-resistant and -susceptible inbred chickens

Ying Yu, Juan Luo, Apratim Mitra, Shuang Chang, Fei Tian, Huanmin Zhang, Ping Yuan, Huaijun Zhou, Jiuzhou Song

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 334 KB

english, 2011

432

Transcriptional signatures of regulatory and toxic responses to benzo-[a]-pyrene exposure

Jacob J Michaelson, Saskia Trump, Susanne Rudzok, Carolin Gräbsch, Danielle J Madureira, Franziska Dautel, Juliane Mai, Sabine Attinger, Kristin Schirmer, Martin von Bergen, Irina Lehmann, Andreas Bey

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 709 KB

english, 2011

433

De novosequence assembly ofAlbugo candidareveals a small genome relative to other biotrophic oomycetes

Matthew G Links, Eric Holub, Rays HY Jiang, Andrew G Sharpe, Dwayne Hegedus, Elena Beynon, Dean Sillito, Wayne E Clarke, Shihomi Uzuhashi, Mohammad H Borhan

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 694 KB

english, 2011

434

A genome-wide survey for SNPs altering microRNA seed sites identifies functional candidates in GWAS

Kris Richardson, Chao-Qiang Lai, Laurence D Parnell, Yu-Chi Lee, Jose M Ordovas

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 434 KB

english, 2011

435

Tumor-specific usage of alternative transcription start sites in colorectal cancer identified by genome-wide exon array analysis

Kasper Thorsen, Troels Schepeler, Bodil Øster, Mads H Rasmussen, Søren Vang, Kai Wang, Kristian Q Hansen, Philippe Lamy, Jakob Skou Pedersen, Asger Eller, Francisco Mansilla, Kirsti Laurila, Carsten W

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 466 KB

english, 2011

436

The human genome: a multifractal analysis

Pedro A Moreno, Patricia E Vélez, Ember Martínez, Luis E Garreta, Néstor Díaz, Siler Amador, Irene Tischer, José M Gutiérrez, Ashwinikumar K Naik, Fabián Tobar, Felipe García

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.72 MB

english, 2011

437

Chipster: user-friendly analysis software for microarray and other high-throughput data

M Aleksi Kallio, Jarno T Tuimala, Taavi Hupponen, Petri Klemelä, Massimiliano Gentile, Ilari Scheinin, Mikko Koski, Janne Käki, Eija I Korpelainen

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 598 KB

english, 2011

438

Meta-analysis and genome-wide interpretation of genetic susceptibility to drug addiction

Chuan-Yun Li, Wei-Zhen Zhou, Ping-Wu Zhang, Catherine Johnson, Liping Wei, George R Uhl

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 397 KB

english, 2011

439

Gene expression profiling in the Cynomolgus macaqueMacaca fascicularisshows variation within the normal birth range

Starling Bright Emerald, Keefe Chng, Shinya Masuda, Deborah M Sloboda, Mark H Vickers, Ravi Kambadur, Peter D Gluckman

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 418 KB

english, 2011

440

Deep sequencing-based analysis of the anaerobic stimulon inNeisseria gonorrhoeae

Vincent M Isabella, Virginia L Clark

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.11 MB

english, 2011

441

A fitness assay for comparing RNAi effects across multipleC. elegansgenotypes

Mark Elvin, Laurens B Snoek, Martin Frejno, Ulrike Klemstein, Jan E Kammenga, Gino B Poulin

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 680 KB

english, 2011

442

Transcriptome map of mouse isochores

Stilianos Arhondakis, Kimon Frousios, Costas S Iliopoulos, Solon P Pissis, German Tischler, Sophia Kossida

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 244 KB

english, 2011

443

Whole genome analysis of linezolid resistance inStreptococcus pneumoniaereveals resistance and compensatory mutations

Dewan S Billal, Jie Feng, Philippe Leprohon, Danielle Légaré, Marc Ouellette

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 300 KB

english, 2011

444

Screening and identification of seed-specific genes using digital differential display tools combined with microarray data from common wheat

Xinglu Yang, Hongliang Xu, Wenhui Li, Le Li, Jinyue Sun, Yaxuan Li, Yueming Yan, Yingkao Hu

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 962 KB

english, 2011

445

Functional annotation of the transcriptome ofSorghum bicolorin response to osmotic stress and abscisic acid

Diana V Dugas, Marcela K Monaco, Andrew Olsen, Robert R Klein, Sunita Kumari, Doreen Ware, Patricia E Klein

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 873 KB

english, 2011

446

Searching ChIP-seq genomic islands for combinatorial regulatory codes in mouse embryonic stem cells

Gong Chen, Qing Zhou

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 751 KB

english, 2011

447

The classification of mRNA expression levels by the phosphorylation state of RNAPII CTD based on a combined genome-wide approach

Jun Odawara, Akihito Harada, Tomohiko Yoshimi, Kazumitsu Maehara, Taro Tachibana, Seiji Okada, Koichi Akashi, Yasuyuki Ohkawa

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 797 KB

english, 2011

448

The reference human nuclear mitochondrial sequences compilation validated and implemented on the UCSC genome browser

Domenico Simone, Francesco Maria Calabrese, Martin Lang, Giuseppe Gasparre, Marcella Attimonelli

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.26 MB

english, 2011

449

Next-generation DNA sequencing-based assay for measuring allelic expression imbalance (AEI) of candidate neuropsychiatric disorder genes in human brain

Xiang Xu, Hao Wang, Min Zhu, Yue Sun, Yu Tao, Qin He, Jian Wang, Li Chen, David Saffen

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 414 KB

english, 2011

450

The transcriptome of the novel dinoflagellateOxyrrhis marina(Alveolata: Dinophyceae): response to salinity examined by 454 sequencing

Chris D Lowe, Luciane V Mello, Najma Samatar, Laura E Martin, David JS Montagnes, Phillip C Watts

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 825 KB

english, 2011

451

Development of a novel multiplex DNA microarray forFusarium graminearumand analysis of azole fungicide responses

Rayko Becher, Fabian Weihmann, Holger B Deising, Stefan GR Wirsel

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 375 KB

english, 2011

452

Proteomic and biochemical analyses reveal the activation of unfolded protein response, ERK-1/2 and ribosomal protein S6 signaling in experimental autoimmune myocarditis rat model

Joo Hee Chung, Hee Jung Choi, Soo Young Kim, Kwan Soo Hong, Soo Kee Min, Myung Hee Nam, Chan Wha Kim, Young Ho Koh, Jong Bok Seo

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 752 KB

english, 2011

453

Development of genomic resources for the narrow-leafed lupin (Lupinus angustifolius): construction of a bacterial artificial chromosome (BAC) library and BAC-end sequencing

Ling-Ling Gao, James K Hane, Lars G Kamphuis, Rhonda Foley, Bu-Jun Shi, Craig A Atkins, Karam B Singh

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 455 KB

english, 2011

454

Effects of the total replacement of fish-based diet with plant-based diet on the hepatic transcriptome of two European sea bass (Dicentrarchus labrax) half-sibfamilies showing different growth rates with the plant-based diet

Florian Geay, Serena Ferraresso, Jose L Zambonino-Infante, Luca Bargelloni, Claire Quentel, Marc Vandeputte, Sachi Kaushik, Chantal L Cahu, David Mazurais

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 392 KB

english, 2011

455

Comparative genomic analysis of Streptococcus suis reveals significant genomic diversity among different serotypes

Anding Zhang, Ming Yang, Pan Hu, Jiayan Wu, Bo Chen, Yafeng Hua, Jun Yu, Huanchun Chen, Jingfa Xiao, Meilin Jin

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.25 MB

english, 2011

456

Transcriptomic effects of di-(2-ethylhexyl)-phthalate in Syrian hamster embryo cells: an important role of early cytoskeleton disturbances in carcinogenesis?

Yann Landkocz, Pascal Poupin, Franck Atienzar, Paule Vasseur

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 723 KB

english, 2011

457

Identification of genes associated with nitrogen-use efficiency by genome-wide transcriptional analysis of two soybean genotypes

Qing N Hao, Xin A Zhou, Ai H Sha, Cheng Wang, Rong Zhou, Shui L Chen

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 288 KB

english, 2011

458

Variation in chromosome copy number influences the virulence ofCryptococcus neoformansand occurs in isolates from AIDS patients

Guanggan Hu, Joyce Wang, Jaehyuk Choi, Won Hee Jung, Iris Liu, Anastasia P Litvintseva, Tihana Bicanic, Rajeev Aurora, Thomas G Mitchell, John R Perfect, James W Kronstad

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.44 MB

english, 2011

459

Altered microRNA expression in frontotemporal lobar degeneration with TDP-43 pathology caused by progranulin mutations

Jannet Kocerha, Naomi Kouri, Matt Baker, NiCole Finch, Mariely DeJesus-Hernandez, John Gonzalez, Kumaravel Chidamparam, Keith A Josephs, Bradley F Boeve, Neill R Graff-Radford, Julia Crook, Dennis W D

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 380 KB

english, 2011

460

A proteogenomic analysis ofShigella flexneriusing 2D LC-MALDI TOF/TOF

Lina Zhao, Liguo Liu, Wenchuan Leng, Candong Wei, Qi Jin

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 491 KB

english, 2011

461

Evidence for widespread changes in promoter methylation profile in human placenta in response to increasing gestational age and environmental/stochastic factors

Boris Novakovic, Ryan K Yuen, Lavinia Gordon, Maria S Penaherrera, Andrew Sharkey, Ashley Moffett, Jeffrey M Craig, Wendy P Robinson, Richard Saffery

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 521 KB

english, 2011

462

Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array

Shikai Liu, Zunchun Zhou, Jianguo Lu, Fanyue Sun, Shaolin Wang, Hong Liu, Yanliang Jiang, Huseyin Kucuktas, Ludmilla Kaltenboeck, Eric Peatman, Zhanjiang Liu

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 722 KB

english, 2011

463

Conjugating effects of symbionts and environmental factors on gene expression in deep-sea hydrothermal vent mussels

Isabelle Boutet, Raymond Ripp, Odile Lecompte, Carole Dossat, Erwan Corre, Arnaud Tanguy, François H Lallier

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 350 KB

english, 2011

464

Tandemly repeated DNA families in the mouse genome

Aleksey S Komissarov, Ekaterina V Gavrilova, Sergey Ju Demin, Alexander M Ishov, Olga I Podgornaya

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.98 MB

english, 2011

465

Within-species lateral genetic transfer and the evolution of transcriptional regulation inEscherichia coliandShigella

Elizabeth Skippington, Mark A Ragan

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 915 KB

english, 2011

466

Pyrosequencing of theCamptotheca acuminatatranscriptome reveals putative genes involved in camptothecin biosynthesis and transport

Yongzhen Sun, Hongmei Luo, Ying Li, Chao Sun, Jingyuan Song, Yunyun Niu, Yingjie Zhu, Liang Dong, Aiping Lv, Enzo Tramontano, Shilin Chen

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 531 KB

english, 2011

467

Comparative Genomics ofHelicobacter pyloriand the human-derivedHelicobacter bizzozeroniiCIII-1 strain reveal the molecular basis of the zoonotic nature of non-pylori gastricHelicobacterinfections in humans

Thomas Schott, Pradeep K Kondadi, Marja-Liisa Hänninen, Mirko Rossi

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 593 KB

english, 2011

468

In vivoandin silicodetermination of essential genes ofCampylobacter jejuni

Aline Metris, Mark Reuter, Duncan JH Gaskin, Jozsef Baranyi, Arnoud HM van Vliet

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.03 MB

english, 2011

469

Extensive recombination events and horizontal gene transfer shaped theLegionella pneumophilagenomes

Laura Gomez-Valero, Christophe Rusniok, Sophie Jarraud, Benoit Vacherie, Zoé Rouy, Valerie Barbe, Claudine Medigue, Jerome Etienne, Carmen Buchrieser

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.27 MB

english, 2011

470

Generation of the first BAC-based physical map of the common carp genome

Peng Xu, Jian Wang, Jintu Wang, Runzi Cui, Yan Li, Zixia Zhao, Peifeng Ji, Yan Zhang, Jiongtang Li, Xiaowen Sun

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 277 KB

english, 2011

471

RNA-Seq reveals genotype-specific molecular responses to water deficit in eucalyptus

Emilie Villar, Christophe Klopp, Céline Noirot, Evandro Novaes, Matias Kirst, Christophe Plomion, Jean-Marc Gion

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 901 KB

english, 2011

472

Transcriptome analysis ofBupleurum chinensefocusing on genes involved in the biosynthesis of saikosaponins

Chun Sui, Jie Zhang, Jianhe Wei, Shilin Chen, Ying Li, Jiesen Xu, Yue Jin, Caixiang Xie, Zhihui Gao, Hongjiang Chen, Chengmin Yang, Zheng Zhang, Yanhong Xu

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 775 KB

english, 2011

473

Discovery pipeline for epigenetically deregulated miRNAs in cancer: integration of primary miRNA transcription

Toby Hulf, Tennille Sibbritt, Erik D Wiklund, Saul Bert, Dario Strbenac, Aaron L Statham, Mark D Robinson, Susan J Clark

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.05 MB

english, 2011

474

RNA-Seq improves annotation of protein-coding genes in the cucumber genome

Zhen Li, Zhonghua Zhang, Pengcheng Yan, Sanwen Huang, Zhangjun Fei, Kui Lin

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 731 KB

english, 2011

475

QTL detection forAeromonas salmonicidaresistance related traits in turbot (Scophthalmus maximus)

Silvia T Rodríguez-Ramilo, Miguel A Toro, Carmen Bouza, Miguel Hermida, Belén G Pardo, Santiago Cabaleiro, Paulino Martínez, Jesús Fernández

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 206 KB

english, 2011

476

Insight into cross-talk between intra-amoebal pathogens

Gregory Gimenez, Claire Bertelli, Claire Moliner, Catherine Robert, Didier Raoult, Pierre-Edouard Fournier, Gilbert Greub

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 958 KB

english, 2011

477

Prediction of RNA Polymerase II recruitment, elongation and stalling from histone modification data

Yun Chen, Mette Jørgensen, Raivo Kolde, Xiaobei Zhao, Brian Parker, Eivind Valen, Jiayu Wen, Albin Sandelin

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.90 MB

english, 2011

478

Complete genome sequence ofCorynebacterium variabileDSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation

Jasmin Schröder, Irena Maus, Eva Trost, Andreas Tauch

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.66 MB

english, 2011

479

Functional microRNA screening using a comprehensive lentiviral human microRNA expression library

Jos B Poell, Rick J van Haastert, Francesco Cerisoli, Anne S Bolijn, Lisette M Timmer, Begoña Diosdado-Calvo, Gerrit A Meijer, Andre AFL van Puijenbroek, Eugene Berezikov, Roel QJ Schaapveld, Edwin Cu

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 846 KB

english, 2011

480

Identification of novel targets for breast cancer by exploring gene switches on a genome scale

Ming Wu, Li Liu, Christina Chan

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.23 MB

english, 2011

481

Genetic variability of transcript abundance in pig peri-mortem skeletal muscle: eQTL localized genes involved in stress response, cell death, muscle disorders and metabolism

Laurence Liaubet, Valérie Lobjois, Thomas Faraut, Aurélie Tircazes, Francis Benne, Nathalie Iannuccelli, José Pires, Jérome Glénisson, Annie Robic, Pascale Le Roy, Magali SanCristobal, Pierre Cherel

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.23 MB

english, 2011

482

HMGA1 drives stem cell, inflammatory pathway, and cell cycle progression genes during lymphoid tumorigenesis

Andrew Schuldenfrei, Amy Belton, Jeanne Kowalski, C Conover Talbot, Francescopaolo Di Cello, Weijie Poh, Hua-Ling Tsai, Sandeep N Shah, Tait H Huso, David L Huso, Linda MS Resar

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.00 MB

english, 2011

483

Recent human evolution has shaped geographical differences in susceptibility to disease

Urko M Marigorta, Oscar Lao, Ferran Casals, Francesc Calafell, Carlos Morcillo-Suárez, Rui Faria, Elena Bosch, François Serra, Jaume Bertranpetit, Hernán Dopazo, Arcadi Navarro

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 450 KB

english, 2011

484

Characterization of RNase MRP RNA and novel snoRNAs from Giardia intestinalis and Trichomonas vaginalis

Xiaowei S Chen, David Penny, Lesley J Collins

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 813 KB

english, 2011

485

Global analysis of gene expression in NGF-deprived sympathetic neurons identifies molecular pathways associated with cell death

Mark Kristiansen, Francesca Menghi, Rosie Hughes, Mike Hubank, Jonathan Ham

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.21 MB

english, 2011

486

Exploring the gonad transcriptome of two extreme male pigs with RNA-seq

Anna Esteve-Codina, Robert Kofler, Nicola Palmieri, Giovanni Bussotti, Cedric Notredame, Miguel Pérez-Enciso

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 677 KB

english, 2011

487

Characterization of the genome of bald cypress

Wenxuan Liu, Supaphan Thummasuwan, Sunish K Sehgal, Philippe Chouvarine, Daniel G Peterson

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 934 KB

english, 2011

488

Developing a community-based genetic nomenclature for anole lizards

Kenro Kusumi, Rob J Kulathinal, Arhat Abzhanov, Stephane Boissinot, Nicholas G Crawford, Brant C Faircloth, Travis C Glenn, Daniel E Janes, Jonathan B Losos, Douglas B Menke, Steven Poe, Thomas J Sang

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 354 KB

english, 2011

489

Sex-dimorphism in Cardiac Nutrigenomics: effect ofTransfat and/or Monosodium Glutamate consumption

Kate S Collison, Marya Z Zaidi, Zakia Maqbool, Soad M Saleh, Angela Inglis, Nadine J Makhoul, Razan Bakheet, Mohammed Shoukri, Futwan A Al-Mohanna

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.59 MB

english, 2011

490

Transcriptome analysis of orange-spotted grouper (Epinephelus coioides) spleen in response to Singapore grouper iridovirus

Youhua Huang, Xiaohong Huang, Yang Yan, Jia Cai, Zhengliang Ouyang, Huachun Cui, Peiran Wang, Qiwei Qin

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 280 KB

english, 2011

491

Global assessment of genomic variation in cattle by genome resequencing and high-throughput genotyping

Bujie Zhan, João Fadista, Bo Thomsen, Jakob Hedegaard, Frank Panitz, Christian Bendixen

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 892 KB

english, 2011

492

The MetJ regulon in gammaproteobacteria determined by comparative genomics methods

Anne M Augustus, Leonard D Spicer

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 624 KB

english, 2011

493

Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery

Paul Stothard, Jung-Woo Choi, Urmila Basu, Jennifer M Sumner-Thomson, Yan Meng, Xiaoping Liao, Stephen S Moore

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 311 KB

english, 2011

494

Pyrosequencing the transcriptome of the greenhouse whitefly,Trialeurodes vaporariorumreveals multiple transcripts encoding insecticide targets and detoxifying enzymes

Nikos Karatolos, Yannick Pauchet, Paul Wilkinson, Ritika Chauhan, Ian Denholm, Kevin Gorman, David R Nelson, Chris Bass, Richard H ffrench-Constant, Martin S Williamson

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.17 MB

english, 2011

495

Nuclear Receptor HNF4α Binding Sequences are Widespread in Alu Repeats

Eugene Bolotin, Karthikeyani Chellappa, Wendy Hwang-Verslues, Jake M Schnabl, Chuhu Yang, Frances M Sladek

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 603 KB

english, 2011

496

Rigorous and thorough bioinformatic analyses of olfactory receptor promoters confirm enrichment of O/E and homeodomain binding sites but reveal no new common motifs

Janet M Young, Ralf M Luche, Barbara J Trask

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 687 KB

english, 2011

497

AluScan: a method for genome-wide scanning of sequence and structure variations in the human genome

Lingling Mei, Xiaofan Ding, Shui-Ying Tsang, Frank W Pun, Siu-Kin Ng, Jianfeng Yang, Cunyou Zhao, Dezhi Li, Weiqing Wan, Chi-Hung Yu, Tze-Ching Tan, Wai-Sang Poon, Gilberto Ka-Kit Leung, Ho-Keung Ng,

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 847 KB

english, 2011

498

Evaluation of the NOD/SCID xenograft model for glucocorticoid-regulated gene expression in childhood B-cell precursor acute lymphoblastic leukemia

Vivek A Bhadri, Mark J Cowley, Warren Kaplan, Toby N Trahair, Richard B Lock

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 382 KB

english, 2011

499

Protein composition of interband regions in polytene and cell line chromosomes ofDrosophila melanogaster

Sergey A Demakov, Tatyana Yu Vatolina, Vladimir N Babenko, Valery F Semeshin, Elena S Belyaeva, Igor F Zhimulev

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.63 MB

english, 2011

500

Whole genome sequencing of peach (Prunus persicaL.) for SNP identification and selection

Riaz Ahmad, Dan E Parfitt, Joseph Fass, Ebenezer Ogundiwin, Amit Dhingra, Thomas M Gradziel, Dawei Lin, Nikhil A Joshi, Pedro J Martinez-Garcia, Carlos H Crisosto

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 206 KB

english, 2011

501

Transcriptome dynamics and molecular cross-talk between bovine oocyte and its companion cumulus cells

A Regassa, F Rings, M Hoelker, U Cinar, E Tholen, C Looft, K Schellander, D Tesfaye

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.55 MB

english, 2011

502

Genome-wide differential gene expression in immortalized DF-1 chicken embryo fibroblast cell line

Byung-Whi Kong, Jeong Yoon Lee, Walter G Bottje, Kentu Lassiter, Jonghyuk Lee, Douglas N Foster

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 875 KB

english, 2011

503

Transcriptional analysis of theHeT-Aretrotransposon in mutant and wild type stocks reveals high sequence variability at Drosophila telomeres and other unusual features

David Piñeyro, Elisenda López-Panadès, María Lucena-Pérez, Elena Casacuberta

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.09 MB

english, 2011

504

The mitogen-activated protein kinome fromAnopheles gambiae: identification, phylogeny and functional characterization of the ERK, JNK and p38 MAP kinases

Ashley A Horton, Bo Wang, Lauren Camp, Mark S Price, Arora Arshi, Mate Nagy, Steven A Nadler, James R Faeder, Shirley Luckhart

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 724 KB

english, 2011

505

Transcriptional responses underlying the hormetic and detrimental effects of the plant secondary metabolite gossypol on the generalist herbivoreHelicoverpa armigera

Maria de la Paz Celorio-Mancera, Seung-Joon Ahn, Heiko Vogel, David G Heckel

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 423 KB

english, 2011

506

Comparative genomics of the type VI secretion systems ofPantoeaandErwiniaspecies reveals the presence of putative effector islands that may be translocated by the VgrG and Hcp proteins

Pieter De Maayer, Stephanus N Venter, Tim Kamber, Brion Duffy, Teresa A Coutinho, Theo HM Smits

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 542 KB

english, 2011

507

Sequence of the hyperplastic genome of the naturally competentThermus scotoductusSA-01

Kamini Gounder, Elzbieta Brzuszkiewicz, Heiko Liesegang, Antje Wollherr, Rolf Daniel, Gerhard Gottschalk, Oleg Reva, Benjamin Kumwenda, Malay Srivastava, Carlos Bricio, José Berenguer, Esta van Heerde

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.12 MB

english, 2011

508

Erroneous attribution of relevant transcription factor binding sites despite successful prediction ofcis-regulatory modules

Marc S Halfon, Qianqian Zhu, Elizabeth R Brennan, Yiyun Zhou

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 310 KB

english, 2011

509

Construction and evaluation of a whole genome microarray ofChlamydomonas reinhardtii

Jörg Toepel, Stefan P Albaum, Samuel Arvidsson, Alexander Goesmann, Marco la Russa, Kristin Rogge, Olaf Kruse

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 298 KB

english, 2011

510

TheTrypanosoma cruziSylvio X10 strain maxicircle sequence: the third musketeer

Laura I Ruvalcaba-Trejo, Nancy R Sturm

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 861 KB

english, 2011

511

Human native lipoprotein-inducedde novoDNA methylation is associated with repression of inflammatory genes in THP-1 macrophages

Rubén Rangel-Salazar, Marie Wickström-Lindholm, Carlos A Aguilar-Salinas, Yolanda Alvarado-Caudillo, Kristina BV Døssing, Manel Esteller, Emmanuel Labourier, Gertrud Lund, Finn C Nielsen, Dalia Rodríg

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 311 KB

english, 2011

512

The association of DNA damage response and nucleotide level modulation with the antibacterial mechanism of the anti-folate drug Trimethoprim

Dipen P Sangurdekar, Zhigang Zhang, Arkady B Khodursky

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 307 KB

english, 2011

513

Directional gene expression and antisense transcripts in sexual and asexual stages ofPlasmodium falciparum

María J López-Barragán, Jacob Lemieux, Mariam Quiñones, Kim C Williamson, Alvaro Molina-Cruz, Kairong Cui, Carolina Barillas-Mury, Keji Zhao, Xin-zhuan Su

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 530 KB

english, 2011

514

The completeAc/Dstransposon family of maize

Chunguang Du, Andrew Hoffman, Limei He, Jason Caronna, Hugo K Dooner

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 733 KB

english, 2011

515

Relative impact of key sources of systematic noise in Affymetrix and Illumina gene-expression microarray experiments

Robert R Kitchen, Vicky S Sabine, Arthur A Simen, J Michael Dixon, John MS Bartlett, Andrew H Sims

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.70 MB

english, 2011

516

An exonic insertion withinTex14gene causes spermatogenic arrest in pigs

Anu Sironen, Pekka Uimari, Heli Venhoranta, Magnus Andersson, Johanna Vilkki

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 596 KB

english, 2011

517

Identification of dysfunctional modules and disease genes in congenital heart disease by a network-based approach

Danning He, Zhi-Ping Liu, Luonan Chen

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.41 MB

english, 2011

518

A co-ordinated interaction between CTCF and ER in breast cancer cells

Caryn S Ross-Innes, Gordon D Brown, Jason S Carroll

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 383 KB

english, 2011

519

A hybrid BAC physical map of potato: a framework for sequencing a heterozygous genome

Jan M de Boer, Theo JA Borm, Taco Jesse, Bart Brugmans, Xiaomin Tang, Glenn J Bryan, Jaap Bakker, Herman J van Eck, Richard GF Visser

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.19 MB

english, 2011

520

Differentially expressed profiles in the larval testes ofWolbachiainfected and uninfectedDrosophila

Ya Zheng, Jia-Lin Wang, Chen Liu, Cui-Ping Wang, Thomas Walker, Yu-Feng Wang

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.00 MB

english, 2011

521

The repertoire of G protein-coupled receptors in the human parasiteSchistosoma mansoniand the model organismSchmidtea mediterranea

Mostafa Zamanian, Michael J Kimber, Paul McVeigh, Steve A Carlson, Aaron G Maule, Tim A Day

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 912 KB

english, 2011

522

Sequencing by ligation variation with endonuclease V digestion and deoxyinosine-containing query oligonucleotides

Antoine Ho, Maurice Murphy, Susan Wilson, Susan R Atlas, Jeremy S Edwards

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 336 KB

english, 2011

523

The odds of duplicate gene persistence after polyploidization

Frédéric JJ Chain, Jonathan Dushoff, Ben J Evans

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 178 KB

english, 2011

524

An iterative workflow for mining the human intestinal metaproteome

Koos Rooijers, Carolin Kolmeder, Catherine Juste, Joël Doré, Mark de Been, Sjef Boeren, Pilar Galan, Christian Beauvallet, Willem M de Vos, Peter J Schaap

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.26 MB

english, 2011

525

Characterization of theConus bullatusgenome and its venom-duct transcriptome

Hao Hu, Pradip K Bandyopadhyay, Baldomero M Olivera, Mark Yandell

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.75 MB

english, 2011

526

De novo assembly ofEuphorbia fischerianaroot transcriptome identifies prostratin pathway related genes

Roberto A Barrero, Brett Chapman, Yanfang Yang, Paula Moolhuijzen, Gabriel Keeble-Gagnère, Nan Zhang, Qi Tang, Matthew I Bellgard, Deyou Qiu

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 604 KB

english, 2011

527

Muscle wasting and the temporal gene expression pattern in a novel rat intensive care unit model

Monica Llano-Diez, Ann-Marie Gustafson, Carl Olsson, Hanna Goransson, Lars Larsson

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 539 KB

english, 2011

528

Mining the Gene Wiki for functional genomic knowledge

Benjamin M Good, Douglas G Howe, Simon M Lin, Warren A Kibbe, Andrew I Su

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 5.63 MB

english, 2011

529

MicroRNA-mediated gene regulation plays a minor role in the transcriptomic plasticity of cold-acclimated Zebrafish brain tissue

Ruolin Yang, Zhonghua Dai, Shue Chen, Liangbiao Chen

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 687 KB

english, 2011

530

The mosquitoAedes aegyptihas a large genome size and high transposable element load but contains a low proportion of transposon-specific piRNAs

Peter Arensburger, Robert H Hice, Jennifer A Wright, Nancy L Craig, Peter W Atkinson

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 617 KB

english, 2011

531

Genetic architecture of gene expression in ovine skeletal muscle

Lisette JA Kogelman, Keren Byrne, Tony Vuocolo, Nathan S Watson-Haigh, Haja N Kadarmideen, James W Kijas, Hutton V Oddy, Graham E Gardner, Cedric Gondro, Ross L Tellam

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 755 KB

english, 2011

532

The maternal and early embryonic transcriptome of the milkweed bugOncopeltus fasciatus

Ben Ewen-Campen, Nathan Shaner, Kristen A Panfilio, Yuichiro Suzuki, Siegfried Roth, Cassandra G Extavour

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 5.06 MB

english, 2011

533

The phosducin-like protein PhLP1 impacts regulation of glycoside hydrolases and light response inTrichoderma reesei

Doris Tisch, Christian P Kubicek, Monika Schmoll

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.74 MB

english, 2011

534

A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns

Sigbjørn Lien, Lars Gidskehaug, Thomas Moen, Ben J Hayes, Paul R Berg, William S Davidson, Stig W Omholt, Matthew P Kent

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 537 KB

english, 2011

535

Correlation of gene expression and protein production rate - a system wide study

Mikko Arvas, Tiina Pakula, Bart Smit, Jari Rautio, Heini Koivistoinen, Paula Jouhten, Erno Lindfors, Marilyn Wiebe, Merja Penttilä, Markku Saloheimo

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.17 MB

english, 2011

536

Genetic and epigenetic variations contributed by Alu retrotransposition

Alexandre de Andrade, Min Wang, Maria F Bonaldo, Hehuang Xie, Marcelo B Soares

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 953 KB

english, 2011

537

Identification of proprotein convertase substrates using genome-wide expression correlation analysis

Hannu Turpeinen, Sampo Kukkurainen, Kati Pulkkinen, Timo Kauppila, Kalle Ojala, Vesa P Hytönen, Marko Pesu

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 430 KB

english, 2011

538

Ade novotranscriptome of the Asian tiger mosquito,Aedes albopictus, to identify candidate transcripts for diapause preparation

Monica F Poelchau, Julie A Reynolds, David L Denlinger, Christine G Elsik, Peter A Armbruster

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 520 KB

english, 2011

539

Characterisation and expression of microRNAs in developing wings of the neotropical butterflyHeliconius melpomene

Alison K Surridge, Sara Lopez-Gomollon, Simon Moxon, Luana S Maroja, Tina Rathjen, Nicola J Nadeau, Tamas Dalmay, Chris D Jiggins

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.66 MB

english, 2011

540

Eukaryote DIRS1-like retrotransposons: an overview

Mathieu Piednoël, Isabelle R Gonçalves, Dominique Higuet, Eric Bonnivard

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 457 KB

english, 2011

541

A tandem sequence motif acts as a distance-dependent enhancer in a set of genes involved in translation by binding the proteins NonO and SFPQ

Stefan Roepcke, Silke Stahlberg, Holger Klein, Marcel H Schulz, Lars Theobald, Sabrina Gohlke, Martin Vingron, Diego J Walther

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 769 KB

english, 2011

542

H2B ubiquitylation is part of chromatin architecture that marks exon-intron structure in budding yeast

Grace S Shieh, Chin-Hua Pan, Jia-Hong Wu, Yun-Ju Sun, Chia-Chang Wang, Wei-Chun Hsiao, Chia-Yeh Lin, Luh Tung, Tien-Hsien Chang, Alastair B Fleming, Cory Hillyer, Yi-Chen Lo, Shelley L Berger, Mary An

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 857 KB

english, 2011

543

A pilot study for channel catfish whole genome sequencing andde novoassembly

Yanliang Jiang, Jianguo Lu, Eric Peatman, Huseyin Kucuktas, Shikai Liu, Shaolin Wang, Fanyue Sun, Zhanjiang Liu

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 606 KB

english, 2011

544

Transcriptome profile analysis of flowering molecular processes of early flowering trifoliate orange mutant and the wild-type [Poncirus trifoliata(L.) Raf.] by massively parallel signature sequencing

Jin-Zhi Zhang, Xiao-Yan Ai, Lei-Ming Sun, Dong-Liang Zhang, Wen-Wu Guo, Xiu-Xin Deng, Chun-Gen Hu

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.33 MB

english, 2011

545

Proteomic analysis of endothelial cold-adaptation

Michael AJ Zieger, Mahesh P Gupta, Mu Wang

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 418 KB

english, 2011

546

Ancient Pbx-Hox signatures define hundreds of vertebrate developmental enhancers

Hugo J Parker, Paul Piccinelli, Tatjana Sauka-Spengler, Marianne Bronner, Greg Elgar

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 994 KB

english, 2011

547

Refinement ofBos taurussequence assembly based on BAC-FISH experiments

Giulia Partipilo, Pietro D’Addabbo, Giovanni M Lacalandra, George E Liu, Mariano Rocchi

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 615 KB

english, 2011

548

Pre-processing and differential expression analysis of Agilent microRNA arrays using theAgiMicroRnaBioconductor library

Pedro López-Romero

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 760 KB

english, 2011

549

Gene set enrichment analysis of microarray data fromPimephales promelas(Rafinesque), a non-mammalian model organism

Michael A Thomas, Luobin Yang, Barbara J Carter, Rebecca D Klaper

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 179 KB

english, 2011

550

Genomic sequencing and analysis of a Chinese hamster ovary cell line using Illumina sequencing technology

Stephanie Hammond, Jeffrey C Swanberg, Mihailo Kaplarevic, Kelvin H Lee

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 394 KB

english, 2011

551

Depletion of eIF4G from yeast cells narrows the range of translational efficiencies genome-wide

Eun-Hee Park, Fan Zhang, Jonas Warringer, Per Sunnerhagen, Alan G Hinnebusch

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 6.39 MB

english, 2011

552

Insights into the innate immunity of the Mediterranean mussel Mytilus galloprovincialis

Paola Venier, Laura Varotto, Umberto Rosani, Caterina Millino, Barbara Celegato, Filippo Bernante, Gerolamo Lanfranchi, Beatriz Novoa, Philippe Roch, Antonio Figueras, Alberto Pallavicini

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 7.39 MB

english, 2011

553

Association genetics inSolanum tuberosumprovides new insights into potato tuber bruising and enzymatic tissue discoloration

Claude Urbany, Benjamin Stich, Lysann Schmidt, Ludwig Simon, Hergen Berding, Holger Junghans, Karl-Heinz Niehoff, Alexander Braun, Eckhard Tacke, Hans-Rheinhardt Hofferbert, Jens Lübeck, Josef Strahwa

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.05 MB

english, 2011

554

Comparative analysis and supragenome modeling of twelveMoraxella catarrhalisclinical isolates

Jeremiah J Davie, Josh Earl, Stefan PW de Vries, Azad Ahmed, Fen Z Hu, Hester J Bootsma, Kim Stol, Peter WM Hermans, Robert M Wadowsky, Garth D Ehrlich, John P Hays, Anthony A Campagnari

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.93 MB

english, 2011

555

Characterization of the past and current duplication activities in the human 22q11.2 region

Xingyi Guo, Laina Freyer, Bernice Morrow, Deyou Zheng

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 4.41 MB

english, 2011

556

Analysis of nucleosome positioning determined by DNA helix curvature in the human genome

Hongde Liu, Xueye Duan, Shuangxin Yu, Xiao Sun

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.30 MB

english, 2011

557

Distinctive mitochondrial genome of Calanoid copepodCalanus sinicuswith multiple large non-coding regions and reshuffled gene order: Useful molecular markers for phylogenetic and population studies

Wang Minxiao, Sun Song, Li Chaolun, Shen Xin

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.56 MB

english, 2011

558

PNAC: a protein nucleolar association classifier

Michelle S Scott, François-Michel Boisvert, Angus I Lamond, Geoffrey J Barton

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 523 KB

english, 2011

559

Genome-wide identification, classification and analysis of heat shock transcription factor family in maize

Yong-Xiang Lin, Hai-Yang Jiang, Zhang-Xin Chu, Xiu-Li Tang, Su-Wen Zhu, Bei-Jiu Cheng

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.91 MB

english, 2011

560

Model SNP development for complex genomes based on hexaploid oat using high-throughput 454 sequencing technology

Rebekah E Oliver, Gerard R Lazo, Joseph D Lutz, Marc J Rubenfield, Nicholas A Tinker, Joseph M Anderson, Nicole H Wisniewski Morehead, Dinesh Adhikary, Eric N Jellen, P Jeffrey Maughan, Gina L Brown G

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 490 KB

english, 2011

561

Segmental duplication as one of the driving forces underlying the diversity of the human immunoglobulin heavy chain variable gene region

Sreemanta Pramanik, Xiangfeng Cui, Hui-Yun Wang, Nyam-Osor Chimge, Guohong Hu, Li Shen, Richeng Gao, Honghua Li

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 582 KB

english, 2011

562

Eukaryote-wide sequence analysis of mitochondrialβ-barrel outer membrane proteins

Kenichiro Imai, Naoya Fujita, M Michael Gromiha, Paul Horton

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 565 KB

english, 2011

563

Genic SNP markers and legume synteny reveal candidate genes underlying QTL forMacrophomina phaseolinaresistance and maturity in cowpea [Vigna unguiculata(L) Walp.]

Wellington Muchero, Jeffrey D Ehlers, Timothy J Close, Philip A Roberts

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.03 MB

english, 2011

564

Evolution of major milk proteins inMus musculusandMus spretusmouse species: a genoproteomic analysis

Nisrine Boumahrou, Claudia Bevilacqua, Christian Beauvallet, Guy Miranda, Sanda Andrei, Emmanuelle Rebours, Jean-Jacques Panthier, Sylvain Bellier, Patrice Martin

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 905 KB

english, 2011

565

Population transcriptomics ofDrosophilamelanogasterfemales

Lena Müller, Stephan Hutter, Rayna Stamboliyska, Sarah S Saminadin-Peter, Wolfgang Stephan, John Parsch

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.16 MB

english, 2011

566

RNA-seq analyses of blood-induced changes in gene expression in the mosquito vector species,Aedes aegypti

Mariangela Bonizzoni, W Augustine Dunn, Corey L Campbell, Ken E Olson, Michelle T Dimon, Osvaldo Marinotti, Anthony A James

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 886 KB

english, 2011

567

ZFNGenome: A comprehensive resource for locating zinc finger nuclease target sites in model organisms

Deepak Reyon, Jessica R Kirkpatrick, Jeffry D Sander, Feng Zhang, Daniel F Voytas, J Keith Joung, Drena Dobbs, Clark R Coffman

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.03 MB

english, 2011

568

Potential efficacy of mitochondrial genes for animal DNA barcoding: a case study using eutherian mammals

Arong Luo, Aibing Zhang, Simon YW Ho, Weijun Xu, Yanzhou Zhang, Weifeng Shi, Stephen L Cameron, Chaodong Zhu

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.30 MB

english, 2011

569

Comparative analysis of pepper and tomato reveals euchromatin expansion of pepper genome caused by differential accumulation ofTy3/Gypsy-like elements

Minkyu Park, SungHwan Jo, Jin-Kyung Kwon, Jongsun Park, Jong Hwa Ahn, Seungill Kim, Yong-Hwan Lee, Tae-Jin Yang, Cheol-Goo Hur, Byoung-Cheorl Kang, Byung-Dong Kim, Doil Choi

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.12 MB

english, 2011

570

An Expressed Sequence Tag collection from the male antennae of the Noctuid mothSpodoptera littoralis: a resource for olfactory and pheromone detection research

Fabrice Legeai, Sébastien Malpel, Nicolas Montagné, Christelle Monsempes, François Cousserans, Christine Merlin, Marie-Christine François, Martine Maïbèche-Coisné, Frédérick Gavory, Julie Poulain, Emm

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 554 KB

english, 2011

571

Identification and functional characterization of small non-coding RNAs inXanthomonas oryzaepathovaroryzae

Hong Liang, Ying-Tao Zhao, Jie-Qiong Zhang, Xiu-Jie Wang, Rong-Xiang Fang, Yan-Tao Jia

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.63 MB

english, 2011

572

The mining of toxin-like polypeptides from EST database by single residue distribution analysis

Sergey Kozlov, Eugene Grishin

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.14 MB

english, 2011

573

A unified framework for multi-locus association analysis of both common and rare variants

Daniel Shriner, Laura Kelly Vaughan

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.17 MB

english, 2011

574

The genome sequence ofE. coliW (ATCC 9637): comparative genome analysis and an improved genome-scale reconstruction ofE. coli

Colin T Archer, Jihyun F Kim, Haeyoung Jeong, Jin Hwan Park, Claudia E Vickers, Sang Yup Lee, Lars K Nielsen

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.46 MB

english, 2011

575

General lack of global dosage compensation in ZZ/ZW systems? Broadening the perspective with RNA-seq

Jochen BW Wolf, Jarosław Bryk

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 266 KB

english, 2011

576

Exome localization of complex disease association signals

Benjamin Lehne, Cathryn M Lewis, Thomas Schlitt

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.36 MB

english, 2011

577

Comparative genomic and transcriptomic analysis revealed genetic characteristics related to solvent formation and xylose utilization inClostridium acetobutylicumEA 2018

Shiyuan Hu, Huajun Zheng, Yang Gu, Jingbo Zhao, Weiwen Zhang, Yunliu Yang, Shengyue Wang, Guoping Zhao, Sheng Yang, Weihong Jiang

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.42 MB

english, 2011

578

Structural variation in the chicken genome identified by paired-end next-generation DNA sequencing of reduced representation libraries

Hindrik HD Kerstens, Richard PMA Crooijmans, Bert W Dibbits, Addie Vereijken, Ron Okimoto, Martien AM Groenen

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.88 MB

english, 2011

579

Differential gene expression in liver and small intestine from lactating rats compared to age-matched virgin controls detects increased mRNA of cholesterol biosynthetic genes

Antony Athippozhy, Liping Huang, Clavia Ruth Wooton-Kee, Tianyong Zhao, Paiboon Jungsuwadee, Arnold J Stromberg, Mary Vore

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 770 KB

english, 2011

580

Obesity resistant mechanisms in the Lean polygenic mouse model as indicated by liver transcriptome and expression of selected genes in skeletal muscle

Matjaž Simončič, Tadeja Režen, Peter Juvan, Damjana Rozman, Gregor Fazarinc, Catherine Fievet, Bart Staels, Simon Horvat

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 329 KB

english, 2011

581

Independent component and pathway-based analysis of miRNA-regulated gene expression in a model of type 1 diabetes

Claus H Bang-Berthelsen, Lykke Pedersen, Tina Fløyel, Peter H Hagedorn, Titus Gylvin, Flemming Pociot

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 798 KB

english, 2011

582

Bimodal distribution of RNA expression levels in human skeletal muscle tissue

Clinton C Mason, Robert L Hanson, Vicky Ossowski, Li Bian, Leslie J Baier, Jonathan Krakoff, Clifton Bogardus

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.36 MB

english, 2011

583

De novocharacterization of the gametophyte transcriptome in bracken fern,Pteridium aquilinum

Joshua P Der, Michael S Barker, Norman J Wickett, Claude W dePamphilis, Paul G Wolf

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.23 MB

english, 2011

584

Integration of linkage maps for the AmphidiploidBrassica napusand comparative mapping withArabidopsisandBrassica rapa

Jun Wang, Derek J Lydiate, Isobel AP Parkin, Cyril Falentin, Régine Delourme, Pierre WC Carion, Graham J King

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.80 MB

english, 2011

585

A proteomics approach to decipher the molecular nature of planarian stem cells

Enrique Fernández-Taboada, Gustavo Rodríguez-Esteban, Emili Saló, Josep F Abril

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.62 MB

english, 2011

586

Nuclear factor I revealed as family of promoter binding transcription activators

Milos Pjanic, Petar Pjanic, Christoph Schmid, Giovanna Ambrosini, Armelle Gaussin, Genta Plasari, Christian Mazza, Philipp Bucher, Nicolas Mermod

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 636 KB

english, 2011

587

454 sequencing of pooled BAC clones on chromosome 3H of barley

Kazuhiro Sato, Yuka Motoi, Nami Yamaji, Hideya Yoshida

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.29 MB

english, 2011

588

Horizontal gene transfer in silkworm,Bombyx mori

Bo Zhu, Miao-Miao Lou, Guan-Lin Xie, Guo-Qing Zhang, Xue-Ping Zhou, Bin Li, Gu-Lei Jin

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 967 KB

english, 2011

589

De novosequence assembly and characterization of the floral transcriptome in cross- and self-fertilizing plants

Rob W Ness, Mathieu Siol, Spencer CH Barrett

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.60 MB

english, 2011

590

Functional categorization of unique expressed sequence tags obtained from the yeast-like growth phase of the elm pathogenOphiostoma novo-ulmi

William Hintz, Michael Pinchback, Paul de la Bastide, Steven Burgess, Volker Jacobi, Richard Hamelin, Colette Breuil, Louis Bernier

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 210 KB

english, 2011

591

Experimental annotation of post-translational features and translated coding regions in the pathogenSalmonellaTyphimurium

Charles Ansong, Nikola Tolić, Samuel O Purvine, Steffen Porwollik, Marcus Jones, Hyunjin Yoon, Samuel H Payne, Jessica L Martin, Meagan C Burnet, Matthew E Monroe, Pratap Venepally, Richard D Smith, S

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.05 MB

english, 2011

592

Evaluation of two commercial global miRNA expression profiling platforms for detection of less abundant miRNAs

Steffen G Jensen, Philippe Lamy, Mads H Rasmussen, Marie S Ostenfeld, Lars Dyrskjøt, Torben F Ørntoft, Claus L Andersen

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 283 KB

english, 2011

593

Comparative transcriptome sequencing of germline and somatic tissues of theAscaris suumgonad

Xuan Ma, Yingjie Zhu, Chunfang Li, Yunlong Shang, Fanjing Meng, Shilin Chen, Long Miao

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 548 KB

english, 2011

594

Ortho2ExpressMatrix—a web server that interprets cross-species gene expression data by gene family information

Thomas Meinel, Michal R Schweiger, Andreas H Ludewig, Ramu Chenna, Sylvia Krobitsch, Ralf Herwig

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 744 KB

english, 2011

595

An integrated approach identifies IFN-regulated microRNAs and targeted mRNAs modulated by different HCV replicon clones

Roberto Bruni, Cinzia Marcantonio, Elena Tritarelli, Paola Tataseo, Emilia Stellacci, Angela Costantino, Umbertina Villano, Angela Battistini, Anna Rita Ciccaglione

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 310 KB

english, 2011

596

Effects of genome-wide copy number variation on expression in mammalian cells

Richard T Wang, Sangtae Ahn, Christopher C Park, Arshad H Khan, Kenneth Lange, Desmond J Smith

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.20 MB

english, 2011

597

Improving gene expression data interpretation by finding latent factors that co-regulate gene modules with clinical factors

Tianwei Yu, Yun Bai

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 606 KB

english, 2011

598

Complex trait subtypes identification using transcriptome profiling reveals an interaction between two QTL affecting adiposity in chicken

Yuna Blum, Guillaume Le Mignon, David Causeur, Olivier Filangi, Colette Désert, Olivier Demeure, Pascale Le Roy, Sandrine Lagarrigue

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 730 KB

english, 2011

599

A gene-based SNP resource and linkage map for the copepodTigriopus californicus

Brad R Foley, Colin G Rose, Daniel E Rundle, Wai Leong, Gary W Moy, Ronald S Burton, Suzanne Edmands

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 268 KB

english, 2011

600

Horizontal gene transfer inHistophilus somniand its role in the evolution of pathogenic strain 2336, as determined by comparative genomic analyses

Shivakumara Siddaramappa, Jean F Challacombe, Alison J Duncan, Allison F Gillaspy, Matthew Carson, Jenny Gipson, Joshua Orvis, Jeremy Zaitshik, Gentry Barnes, David Bruce, Olga Chertkov, J Chris Dette

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.26 MB

english, 2011

601

The complete mitochondrial genome ofFlustra foliacea(Ectoprocta, Cheilostomata) - compositional bias affects phylogenetic analyses of lophotrochozoan relationships

Maximilian P Nesnidal, Martin Helmkampf, Iris Bruchhaus, Bernhard Hausdorf

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 828 KB

english, 2011

602

Analysis of CpG methylation sites and CGI among human papillomavirus DNA genomes

Silvia C Galván, Martha Martínez-Salazar, Víctor M Galván, Rocío Méndez, Gibran T Díaz-Contreras, Moisés Alvarado-Hermida, Rogelio Alcántara-Silva, Alejandro García-Carrancá

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 424 KB

english, 2011

603

De novoassembly and characterization of a maternal and developmental transcriptome for the emerging model crustaceanParhyale hawaiensis

Victor Zeng, Karina E Villanueva, Ben S Ewen-Campen, Frederike Alwes, William E Browne, Cassandra G Extavour

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.14 MB

english, 2011

604

Closely relatedCampylobacter jejunistrains from different sources reveal a generalist rather than a specialist lifestyle

Eugenia Gripp, Daniela Hlahla, Xavier Didelot, Friederike Kops, Sven Maurischat, Karsten Tedin, Thomas Alter, Lüppo Ellerbroek, Kerstin Schreiber, Dietmar Schomburg, Traute Janssen, Patrick Bartholomä

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.23 MB

english, 2011

605

Production of a reference transcriptome and transcriptomic database (PocilloporaBase) for the cauliflower coral,Pocillopora damicornis

Nikki Traylor-Knowles, Brian R Granger, Tristan J Lubinski, Jignesh R Parikh, Sara Garamszegi, Yu Xia, Jarrod A Marto, Les Kaufman, John R Finnerty

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.49 MB

english, 2011

606

Identification and analysis of the RNA degrading complexes and machinery ofGiardia lambliausing anin silicoapproach

Christopher W Williams, Heidi G Elmendorf

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 698 KB

english, 2011

607

Annotation-based genome-wide SNP discovery in the large and complexAegilops tauschiigenome using next-generation sequencing without a reference genome sequence

Frank M You, Naxin Huo, Karin R Deal, Yong Q Gu, Ming-Cheng Luo, Patrick E McGuire, Jan Dvorak, Olin D Anderson

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 498 KB

english, 2011

608

Revealing the missing expressed genes beyond the human reference genome by RNA-Seq

Geng Chen, Ruiyuan Li, Leming Shi, Junyi Qi, Pengzhan Hu, Jian Luo, Mingyao Liu, Tieliu Shi

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 230 KB

english, 2011

609

High resolution profiling of human exon methylation by liquid hybridization capture-based bisulfite sequencing

Junwen Wang, Hui Jiang, Guanyu Ji, Fei Gao, Mingzhi Wu, Jihua Sun, Huijuan Luo, Jinghua Wu, Renhua Wu, Xiuqing Zhang

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 311 KB

english, 2011

610

Chromatin-drivende novodiscovery of DNA binding motifs in the human malaria parasite

Elena Y Harris, Nadia Ponts, Karine G Le Roch, Stefano Lonardi

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 470 KB

english, 2011

611

Subfunctionalization reduces the fitness cost of gene duplication in humans by buffering dosage imbalances

Ariel Fernández, Yun-Huei Tzeng, Sze-Bi Hsu

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 326 KB

english, 2011

612

Defense mechanisms against herbivory inPicea: sequence evolution and expression regulation of gene family members in the phenylpropanoid pathway

Ilga Porth, Björn Hamberger, Richard White, Kermit Ritland

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 619 KB

english, 2011

613

Structural characterization ofhelitronsand their stepwise capturing of gene fragments in the maize genome

Yongbin Dong, Xiaomin Lu, Weibin Song, Lei Shi, Mei Zhang, Hainan Zhao, Yinping Jiao, Jinsheng Lai

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 369 KB

english, 2011

614

Expression QTL mapping in regulatory and helper T cells from the BXD family of strains reveals novel cell-specific genes, gene-gene interactions and candidate genes for auto-immune disease

Rudi Alberts, Hairong Chen, Claudia Pommerenke, August B Smit, Sabine Spijker, Robert W Williams, Robert Geffers, Dunja Bruder, Klaus Schughart

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.97 MB

english, 2011

615

Genome-wide transcriptional profiling of peripheral blood leukocytes from cattle infected withMycobacterium bovisreveals suppression of host immune genes

Kate E Killick, John A Browne, Stephen DE Park, David A Magee, Irene Martin, Kieran G Meade, Stephen V Gordon, Eamonn Gormley, Cliona O’Farrelly, Karsten Hokamp, David E MacHugh

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 540 KB

english, 2011

616

An insight into the sialome ofSimulium guianense(DIPTERA:SIMulIIDAE), the main vector of River Blindness Disease in Brazil

Andrezza C Chagas, Eric Calvo, Paulo FP Pimenta, José MC Ribeiro

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.78 MB

english, 2011

617

PhosTryp: a phosphorylation site predictor specific for parasitic protozoa of the family trypanosomatidae

Antonio Palmeri, Pier Federico Gherardini, Polina Tsigankov, Gabriele Ausiello, Gerald F Späth, Dan Zilberstein, Manuela Helmer-Citterich

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 309 KB

english, 2011

618

An expression map forAnopheles gambiae

Robert M MacCallum, Seth N Redmond, George K Christophides

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 983 KB

english, 2011

619

Comparison of measures of marker informativeness for ancestry and admixture mapping

Lili Ding, Howard Wiener, Tilahun Abebe, Mekbib Altaye, Rodney CP Go, Carolyn Kercsmar, Greg Grabowski, Lisa J Martin, Gurjit K Khurana Hershey, Ranajit Chakorborty, Tesfaye M Baye

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.31 MB

english, 2011

620

Polyphenism in social insects: insights from a transcriptome-wide analysis of gene expression in the life stages of the key pollinator,Bombus terrestris

Thomas J Colgan, James C Carolan, Stephen J Bridgett, Seirian Sumner, Mark L Blaxter, Mark JF Brown

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 913 KB

english, 2011

621

Coupled transcriptome and proteome analysis of human lymphotropic tumor viruses: insights on the detection and discovery of viral genes

Lindsay R Dresang, Jeremy R Teuton, Huichen Feng, Jon M Jacobs, David G Camp, Samuel O Purvine, Marina A Gritsenko, Zhihua Li, Richard D Smith, Bill Sugden, Patrick S Moore, Yuan Chang

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 749 KB

english, 2011

622

Generation of a reference transcriptome for evaluating rainbow trout responses to various stressors

Cecilia C Sánchez, Gregory M Weber, Guangtu Gao, Beth M Cleveland, Jianbo Yao, Caird E Rexroad

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 630 KB

english, 2011

623

Using RNA-seq to determine the transcriptional landscape and the hypoxic response of the pathogenic yeastCandida parapsilosis

Alessandro Guida, Claudia Lindstädt, Sarah L Maguire, Chen Ding, Desmond G Higgins, Nicola J Corton, Matthew Berriman, Geraldine Butler

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 413 KB

english, 2011

624

3Increasing the source/sink ratio inVitis vinifera(cv Sangiovese) induces extensive transcriptome reprogramming and modifies berry ripening

Chiara Pastore, Sara Zenoni, Giovanni Battista Tornielli, Gianluca Allegro, Silvia Dal Santo, Gabriele Valentini, Cesare Intrieri, Mario Pezzotti, Ilaria Filippetti

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 734 KB

english, 2011

625

Comprehensive analysis of tandem amino acid repeats from ten angiosperm genomes

Yuan Zhou, Jing Liu, Lei Han, Zhi-Gang Li, Ziding Zhang

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 507 KB

english, 2011

626

Novel features of ARS selection in budding yeastLachancea kluyveri

Ivan Liachko, Emi Tanaka, Katherine Cox, Shau Chee Claire Chung, Lu Yang, Arael Seher, Lindsay Hallas, Eugene Cha, Gina Kang, Heather Pace, Jasmine Barrow, Maki Inada, Bik-Kwoon Tye, Uri Keich

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.43 MB

english, 2011

627

Expression divergence measured by transcriptome sequencing of four yeast species

Michele A Busby, Jesse M Gray, Allen M Costa, Chip Stewart, Michael P Stromberg, Derek Barnett, Jeffrey H Chuang, Michael Springer, Gabor T Marth

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 606 KB

english, 2011

628

Employing machine learning for reliable miRNA target identification in plants

Ashwani Jha, Ravi Shankar

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.20 MB

english, 2011

629

Opposite GC skews at the 5' and 3' ends of genes in unicellular fungi

Malcolm A McLean, Itay Tirosh

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 307 KB

english, 2011

630

Information content in genome-wide scans: concordance between patterns of genetic differentiation and linkage mapping associations

Pamela Wiener, Mohammad A Edriss, John L Williams, David Waddington, Andrew Law, John A Woolliams, Beatriz Gutiérrez-Gil

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 235 KB

english, 2011

631

Comparative genomics allowed the identification of drug targets against human fungal pathogens

Ana Karina R Abadio, Erika S Kioshima, Marcus M Teixeira, Natalia F Martins, Bernard Maigret, Maria Sueli S Felipe

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 489 KB

english, 2011

632

GC content around splice sites affects splicing through pre-mRNA secondary structures

Jing Zhang, CC Jay Kuo, Liang Chen

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 292 KB

english, 2011

633

Identification of surface proteins inEnterococcus faecalisV583

Liv Anette Bøhle, Tahira Riaz, Wolfgang Egge-Jacobsen, Morten Skaugen, Øyvind L Busk, Vincent GH Eijsink, Geir Mathiesen

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 464 KB

english, 2011

634

Genome wide SNP discovery, analysis and evaluation in mallard (Anas platyrhynchos)

Robert HS Kraus, Hindrik HD Kerstens, Pim Van Hooft, Richard PMA Crooijmans, Jan J Van Der Poel, Johan Elmberg, Alain Vignal, Yinhua Huang, Ning Li, Herbert HT Prins, Martien AM Groenen

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 880 KB

english, 2011

635

Preferential regulation of miRNA targets by environmental chemicals in the human genome

Xudong Wu, Yijiang Song

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 4.11 MB

english, 2011

636

Single nucleotide polymorphism discovery from expressed sequence tags in the waterfleaDaphnia magna

Luisa Orsini, Mieke Jansen, Erika L Souche, Sarah Geldof, Luc De Meester

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 319 KB

english, 2011

637

On the quest for selective constraints shaping the expressivity of the genes casting retropseudogenes in human

Kamalika Sen, Soumita Podder, Tapash C Ghosh

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 299 KB

english, 2011

638

SNOntology: Myriads of novel snornas or just a mirage?

Makarova, Julia A, Kramerov, Dmitri A

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 738 KB

english, 2011

639

Thyroid hormone-regulated gene expression in juvenile mouse liver: identification of thyroid response elements using microarray profiling andin silicoanalyses

Paquette, Martin A, Dong, Hongyan, Gagné, Rémi, Williams, Andrew, Malowany, Morie, Wade, Mike G, Yauk, Carole L

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 570 KB

english, 2011