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Volume 9; Issue 1
Main
BMC Bioinformatics
Volume 9; Issue 1
BMC Bioinformatics
Volume 9; Issue 1
1
Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations
Jukka Corander
,
Pekka Marttinen
,
Jukka Sirén
,
Jing Tang
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 477 KB
Vos balises:
english, 2008
2
QuantPrime – a flexible tool for reliable high-throughput primer design for quantitative PCR
Samuel Arvidsson
,
Miroslaw Kwasniewski
,
Diego Mauricio Riaño-Pachón
,
Bernd Mueller-Roeber
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.62 MB
Vos balises:
english, 2008
3
BatchPrimer3: A high throughput web application for PCR and sequencing primer design
Frank M You
,
Naxin Huo
,
Yong Qiang Gu
,
Ming-cheng Luo
,
Yaqin Ma
,
Dave Hane
,
Gerard R Lazo
,
Jan Dvorak
,
Olin D Anderson
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 371 KB
Vos balises:
english, 2008
4
ComPath: comparative enzyme analysis and annotation in pathway/subsystem contexts
Kwangmin Choi
,
Sun Kim
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 4.52 MB
Vos balises:
english, 2008
5
Evaluation of time profile reconstruction from complex two-color microarray designs
Ana C Fierro
,
Raphael Thuret
,
Kristof Engelen
,
Gilles Bernot
,
Kathleen Marchal
,
Nicolas Pollet
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 309 KB
Vos balises:
english, 2008
6
Corpus annotation for mining biomedical events from literature
Jin-Dong Kim
,
Tomoko Ohta
,
Jun'ichi Tsujii
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 516 KB
Vos balises:
english, 2008
7
Analyzing M-CSF dependent monocyte/macrophage differentiation: Expression modes and meta-modes derived from an independent component analysis
Dominik Lutter
,
Peter Ugocsai
,
Margot Grandl
,
Evelyn Orso
,
Fabian Theis
,
Elmar W Lang
,
Gerd Schmitz
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 560 KB
Vos balises:
english, 2008
8
Prediction of mucin-type O-glycosylation sites in mammalian proteins using the composition ofk-spaced amino acid pairs
Yong-Zi Chen
,
Yu-Rong Tang
,
Zhi-Ya Sheng
,
Ziding Zhang
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 358 KB
Vos balises:
english, 2008
9
Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics
Indra Neil Sarkar
,
Mary G Egan
,
Gloria Coruzzi
,
Ernest K Lee
,
Rob DeSalle
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 250 KB
Vos balises:
english, 2008
10
PDTD: a web-accessible protein database for drug target identification
Zhenting Gao
,
Honglin Li
,
Hailei Zhang
,
Xiaofeng Liu
,
Ling Kang
,
Xiaomin Luo
,
Weiliang Zhu
,
Kaixian Chen
,
Xicheng Wang
,
Hualiang Jiang
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 756 KB
Vos balises:
english, 2008
11
Piecewise multivariate modelling of sequential metabolic profiling data
Mattias Rantalainen
,
Olivier Cloarec
,
Timothy MD Ebbels
,
Torbjörn Lundstedt
,
Jeremy K Nicholson
,
Elaine Holmes
,
Johan Trygg
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 386 KB
Vos balises:
english, 2008
12
K-OPLS package: Kernel-based orthogonal projections to latent structures for prediction and interpretation in feature space
Max Bylesjö
,
Mattias Rantalainen
,
Jeremy K Nicholson
,
Elaine Holmes
,
Johan Trygg
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 275 KB
Vos balises:
english, 2008
13
Fuzzy association rules for biological data analysis: A case study on yeast
Francisco J Lopez
,
Armando Blanco
,
Fernando Garcia
,
Carlos Cano
,
Antonio Marin
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 859 KB
Vos balises:
english, 2008
14
MScanner: a classifier for retrieving Medline citations
Graham L Poulter
,
Daniel L Rubin
,
Russ B Altman
,
Cathal Seoighe
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 414 KB
Vos balises:
english, 2008
15
Evolutionary Pareto-optimization of stably folding peptides
Wolfram Gronwald
,
Tim Hohm
,
Daniel Hoffmann
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.16 MB
Vos balises:
english, 2008
16
SeqAn An efficient, generic C++ library for sequence analysis
Andreas Döring
,
David Weese
,
Tobias Rausch
,
Knut Reinert
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 553 KB
Vos balises:
english, 2008
17
SPIKE – a database, visualization and analysis tool of cellular signaling pathways
Ran Elkon
,
Rita Vesterman
,
Nira Amit
,
Igor Ulitsky
,
Idan Zohar
,
Mali Weisz
,
Gilad Mass
,
Nir Orlev
,
Giora Sternberg
,
Ran Blekhman
,
Jackie Assa
,
Yosef Shiloh
,
Ron Shamir
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 929 KB
Vos balises:
english, 2008
18
Simple integrative preprocessing preserves what is shared in data sources
Abhishek Tripathi
,
Arto Klami
,
Samuel Kaski
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 349 KB
Vos balises:
english, 2008
19
ReAlignerV: Web-based genomic alignment tool with high specificity and robustness estimated by species-specific insertion sequences
Hisakazu Iwama
,
Yukio Hori
,
Kensuke Matsumoto
,
Koji Murao
,
Toshihiko Ishida
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 723 KB
Vos balises:
english, 2008
20
Human Pol II promoter recognition based on primary sequences and free energy of dinucleotides
Jian-Yi Yang
,
Yu Zhou
,
Zu-Guo Yu
,
Vo Anh
,
Li-Qian Zhou
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 522 KB
Vos balises:
english, 2008
21
Effects of dependence in high-dimensional multiple testing problems
Kyung In Kim
,
Mark A van de Wiel
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 371 KB
Vos balises:
english, 2008
22
Novel methodology for construction and pruning of quasi-median networks
Sarah C Ayling
,
Terence A Brown
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.43 MB
Vos balises:
english, 2008
23
CWRML: representing crop wild relative conservation and use data in XML
Jonathan D Moore
,
Shelagh P Kell
,
Jose M Iriondo
,
Brian V Ford-Lloyd
,
Nigel Maxted
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 274 KB
Vos balises:
english, 2008
24
A mixture model approach to sample size estimation in two-sample comparative microarray experiments
Tommy S Jørstad
,
Herman Midelfart
,
Atle M Bones
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 329 KB
Vos balises:
english, 2008
25
Exon level integration of proteomics and microarray data
Danny A Bitton
,
Michał J Okoniewski
,
Yvonne Connolly
,
Crispin J Miller
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.33 MB
Vos balises:
english, 2008
26
High-precision high-coverage functional inference from integrated data sources
Bolan Linghu
,
Evan S Snitkin
,
Dustin T Holloway
,
Adam M Gustafson
,
Yu Xia
,
Charles DeLisi
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 657 KB
Vos balises:
english, 2008
27
Which missing value imputation method to use in expression profiles: a comparative study and two selection schemes
Guy N Brock
,
John R Shaffer
,
Richard E Blakesley
,
Meredith J Lotz
,
George C Tseng
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 356 KB
Vos balises:
english, 2008
28
A Bayesian method for calculating real-time quantitative PCR calibration curves using absolute plasmid DNA standards
Mano Sivaganesan
,
Shawn Seifring
,
Manju Varma
,
Richard A Haugland
,
Orin C Shanks
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 377 KB
Vos balises:
english, 2008
29
SciDBMaker: new software for computer-aided design of specialized biological databases
Riadh Hammami
,
Abdelmajid Zouhir
,
Karim Naghmouchi
,
Jeannette Ben Hamida
,
Ismail Fliss
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 952 KB
Vos balises:
english, 2008
30
Strategies for measuring evolutionary conservation of RNA secondary structures
Andreas R Gruber
,
Stephan H Bernhart
,
Ivo L Hofacker
,
Stefan Washietl
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.73 MB
Vos balises:
english, 2008
31
Assessment of composite motif discovery methods
Kjetil Klepper
,
Geir K Sandve
,
Osman Abul
,
Jostein Johansen
,
Finn Drablos
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 310 KB
Vos balises:
english, 2008
32
A gene pattern mining algorithm using interchangeable gene sets for prokaryotes
Meng Hu
,
Kwangmin Choi
,
Wei Su
,
Sun Kim
,
Jiong Yang
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 322 KB
Vos balises:
english, 2008
33
Merging microarray data from separate breast cancer studies provides a robust prognostic test
Lei Xu
,
Aik Choon Tan
,
Raimond L Winslow
,
Donald Geman
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 629 KB
Vos balises:
english, 2008
34
DOVIS: an implementation for high-throughput virtual screening using AutoDock
Shuxing Zhang
,
Kamal Kumar
,
Xiaohui Jiang
,
Anders Wallqvist
,
Jaques Reifman
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 220 KB
Vos balises:
english, 2008
35
DBMLoc: a Database of proteins with multiple subcellular localizations
Song Zhang
,
Xuefeng Xia
,
Jincheng Shen
,
Yun Zhou
,
Zhirong Sun
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 452 KB
Vos balises:
english, 2008
36
Using quality scores and longer reads improves accuracy of Solexa read mapping
Andrew D Smith
,
Zhenyu Xuan
,
Michael Q Zhang
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 440 KB
Vos balises:
english, 2008
37
Term-tissue specific models for prediction of gene ontology biological processes using transcriptional profiles of aging in drosophila melanogaster
Wensheng Zhang
,
Sige Zou
,
Jiuzhou Song
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 309 KB
Vos balises:
english, 2008
38
FCI: an R-based algorithm for evaluating uncertainty of absolute real-time PCR quantification
Paolo Verderio
,
Sara Pizzamiglio
,
Fabio Gallo
,
Simon C Ramsden
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 471 KB
Vos balises:
english, 2008
39
catmap:Case-controlAndTDTMeta-AnalysisPackage
Kristin K Nicodemus
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 233 KB
Vos balises:
english, 2008
40
Shape based indexing for faster search of RNA family databases
Stefan Janssen
,
Jens Reeder
,
Robert Giegerich
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 652 KB
Vos balises:
english, 2008
41
Objective and automated protocols for the evaluation of biomedical search engines using No Title Evaluation protocols
Fabien Campagne
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 638 KB
Vos balises:
english, 2008
42
A software application for comparing large numbers of high resolution MALDI-FTICR MS spectra demonstrated by searching candidate biomarkers for glioma blood vessel formation
Mark K Titulaer
,
Dana AN Mustafa
,
Ivar Siccama
,
Marco Konijnenburg
,
Peter C Burgers
,
Arno C Andeweg
,
Peter AE Sillevis Smitt
,
Johan M Kros
,
Theo M Luider
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 567 KB
Vos balises:
english, 2008
43
Inferring transcriptional compensation interactions in yeast via stepwise structure equation modeling
Grace S Shieh
,
Chung-Ming Chen
,
Ching-Yun Yu
,
Juiling Huang
,
Woei-Fuh Wang
,
Yi-Chen Lo
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 328 KB
Vos balises:
english, 2008
44
Functional discrimination of membrane proteins using machine learning techniques
M Michael Gromiha
,
Yukimitsu Yabuki
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 260 KB
Vos balises:
english, 2008
45
Mining phenotypes for gene function prediction
Philip Groth
,
Bertram Weiss
,
Hans-Dieter Pohlenz
,
Ulf Leser
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 401 KB
Vos balises:
english, 2008
46
How reliably can we predict the reliability of protein structure predictions?
István Miklós
,
Ádám Novák '
,
Balázs Dombai
,
Jotun Hein
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1007 KB
Vos balises:
english, 2008
47
Goldsurfer2 (Gs2): A comprehensive tool for the analysis and visualization of genome wide association studies
Fredrik Pettersson
,
Andrew P Morris
,
Michael R Barnes
,
Lon R Cardon
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.28 MB
Vos balises:
english, 2008
48
Information transfer in signaling pathways: A study using coupled simulated and experimental data
Jürgen Pahle
,
Anne K Green
,
C Jane Dixon
,
Ursula Kummer
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 415 KB
Vos balises:
english, 2008
49
Allowing for mandatory covariates in boosting estimation of sparse high-dimensional survival models
Harald Binder
,
Martin Schumacher
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 330 KB
Vos balises:
english, 2008
50
Normalization of oligonucleotide arrays based on the least-variant set of genes
Stefano Calza
,
Davide Valentini
,
Yudi Pawitan
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 11.48 MB
Vos balises:
english, 2008
51
Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence
Adriano Barbosa-Silva
,
Venkata P Satagopam
,
Reinhard Schneider
,
J Miguel Ortega
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 484 KB
Vos balises:
english, 2008
52
Ranking analysis ofF-statistics for microarray data
Yuan-De Tan
,
Myriam Fornage
,
Hongyan Xu
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 306 KB
Vos balises:
english, 2008
53
Discovering gene annotations in biomedical text databases
Ali Cakmak
,
Gultekin Ozsoyoglu
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 321 KB
Vos balises:
english, 2008
54
Empirical Bayes analysis of single nucleotide polymorphisms
Holger Schwender
,
Katja Ickstadt
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 408 KB
Vos balises:
english, 2008
55
Polymorphism Interaction Analysis (PIA): a method for investigating complex gene-gene interactions
Leah E Mechanic
,
Brian T Luke
,
Julie E Goodman
,
Stephen J Chanock
,
Curtis C Harris
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 297 KB
Vos balises:
english, 2008
56
Conditional clustering of temporal expression profiles
Ling Wang
,
Monty Montano
,
Matt Rarick
,
Paola Sebastiani
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.21 MB
Vos balises:
english, 2008
57
Testing the Coulomb/Accessible Surface Area solvent model for protein stability, ligand binding, and protein design
Marcel Schmidt am Busch
,
Anne Lopes
,
Najette Amara
,
Christine Bathelt
,
Thomas Simonson
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 536 KB
Vos balises:
english, 2008
58
Prediction of the outcome of preoperative chemotherapy in breast cancer using DNA probes that provide information on both complete and incomplete responses
René Natowicz
,
Roberto Incitti
,
Euler Guimarães Horta
,
Benoît Charles
,
Philippe Guinot
,
Kai Yan
,
Charles Coutant
,
Fabrice Andre
,
Lajos Pusztai
,
Roman Rouzier
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 502 KB
Vos balises:
english, 2008
59
Multiple organism algorithm for finding ultraconserved elements
Scott Christley
,
Neil F Lobo
,
Greg Madey
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 421 KB
Vos balises:
english, 2008
60
Optimizations for the EcoPod field identification tool
Aswath Manoharan
,
Jeannie Stamberger
,
YuanYuan Yu
,
Andreas Paepcke
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.51 MB
Vos balises:
english, 2008
61
H2r: Identification of evolutionary important residues by means of an entropy based analysis of multiple sequence alignments
Rainer Merkl
,
Matthias Zwick
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.02 MB
Vos balises:
english, 2008
62
13C labeling experiments at metabolic nonstationary conditions: An exploratory study
Sebastian Aljoscha Wahl
,
Katharina Nöh
,
Wolfgang Wiechert
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 730 KB
Vos balises:
english, 2008
63
Exploration and visualization of gene expression with neuroanatomy in the adult mouse brain
Christopher Lau
,
Lydia Ng
,
Carol Thompson
,
Sayan Pathak
,
Leonard Kuan
,
Allan Jones
,
Mike Hawrylycz
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 3.12 MB
Vos balises:
english, 2008
64
DNAAlignEditor: DNA alignment editor tool
Hector Sanchez-Villeda
,
Steven Schroeder
,
Sherry Flint-Garcia
,
Katherine E Guill
,
Masanori Yamasaki
,
Michael D McMullen
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 900 KB
Vos balises:
english, 2008
65
Methods for simultaneously identifying coherent local clusters with smooth global patterns in gene expression profiles
Yin-Jing Tien
,
Yun-Shien Lee
,
Han-Ming Wu
,
Chun-Houh Chen
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.12 MB
Vos balises:
english, 2008
66
Empirical Bayes models for multiple probe type microarrays at the probe level
Magnus Åstrand
,
Petter Mostad
,
Mats Rudemo
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 817 KB
Vos balises:
english, 2008
67
BioSAVE: Display of scored annotation within a sequence context
Richard F Pollock
,
Boris Adryan
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 709 KB
Vos balises:
english, 2008
68
Improving the prediction of mRNA extremities in the parasitic protozoanLeishmania
Martin Smith
,
Mathieu Blanchette
,
Barbara Papadopoulou
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 881 KB
Vos balises:
english, 2008
69
Synonym set extraction from the biomedical literature by lexical pattern discovery
John McCrae
,
Nigel Collier
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 351 KB
Vos balises:
english, 2008
70
A new method for class prediction based on signed-rank algorithms applied to Affymetrix®microarray experiments
Thierry Rème
,
Dirk Hose
,
John De Vos
,
Aurélien Vassal
,
Pierre-Olivier Poulain
,
Véronique Pantesco
,
Hartmut Goldschmidt
,
Bernard Klein
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 440 KB
Vos balises:
english, 2008
71
Computational evaluation of TIS annotation for prokaryotic genomes
Gang-Qing Hu
,
Xiaobin Zheng
,
Li-Ning Ju
,
Huaiqiu Zhu
,
Zhen-Su She
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 684 KB
Vos balises:
english, 2008
72
A simple and fast heuristic for protein structure comparison
David A Pelta
,
Juan R González
,
Marcos Moreno Vega
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 504 KB
Vos balises:
english, 2008
73
Adaptive diffusion kernel learning from biological networks for protein function prediction
Liang Sun
,
Shuiwang Ji
,
Jieping Ye
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 413 KB
Vos balises:
english, 2008
74
OpenMS – An open-source software framework for mass spectrometry
Marc Sturm
,
Andreas Bertsch
,
Clemens Gröpl
,
Andreas Hildebrandt
,
Rene Hussong
,
Eva Lange
,
Nico Pfeifer
,
Ole Schulz-Trieglaff
,
Alexandra Zerck
,
Knut Reinert
,
Oliver Kohlbacher
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 731 KB
Vos balises:
english, 2008
75
A comprehensive re-analysis of the Golden Spike data: Towards a benchmark for differential expression methods
Richard D Pearson
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 473 KB
Vos balises:
english, 2008
76
Stability analysis of mixtures of mutagenetic trees
Jasmina Bogojeska
,
Thomas Lengauer
,
Jörg Rahnenführer
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.05 MB
Vos balises:
english, 2008
77
Fast NJ-like algorithms to deal with incomplete distance matrices
Alexis Criscuolo
,
Olivier Gascuel
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 387 KB
Vos balises:
english, 2008
78
Efficient computation of absent words in genomic sequences
Julia Herold
,
Stefan Kurtz
,
Robert Giegerich
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 288 KB
Vos balises:
english, 2008
79
Chromhome: A rich internet application for accessing comparative chromosome homology maps
Sridevi Nagarajan
,
Willem Rens
,
James Stalker
,
Tony Cox
,
Malcolm A Ferguson-Smith
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 792 KB
Vos balises:
english, 2008
80
MausDB: An open source application for phenotype data and mouse colony management in large-scale mouse phenotyping projects
Holger Maier
,
Christoph Lengger
,
Bruno Simic
,
Helmut Fuchs
,
Valérie Gailus-Durner
,
Martin Hrabé de Angelis
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.87 MB
Vos balises:
english, 2008
81
Prediction of enzyme function based on 3D templates of evolutionarily important amino acids
David M Kristensen
,
R Matthew Ward
,
Andreas Martin Lisewski
,
Serkan Erdin
,
Brian Y Chen
,
Viacheslav Y Fofanov
,
Marek Kimmel
,
Lydia E Kavraki
,
Olivier Lichtarge
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 2.11 MB
Vos balises:
english, 2008
82
PSAT: A web tool to compare genomic neighborhoods of multiple prokaryotic genomes
Christine Fong
,
Laurence Rohmer
,
Matthew Radey
,
Michael Wasnick
,
Mitchell J Brittnacher
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 365 KB
Vos balises:
english, 2008
83
Interrogating domain-domain interactions with parsimony based approaches
Katia S Guimarães
,
Teresa M Przytycka
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.17 MB
Vos balises:
english, 2008
84
Predicting cancer involvement of genes from heterogeneous data
Ramon Aragues
,
Chris Sander
,
Baldo Oliva
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 848 KB
Vos balises:
english, 2008
85
LocateP: Genome-scale subcellular-location predictor for bacterial proteins
Miaomiao Zhou
,
Jos Boekhorst
,
Christof Francke
,
Roland J Siezen
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 813 KB
Vos balises:
english, 2008
86
Snagger: A user-friendly program for incorporating additional information for tagSNP selection
Christopher K Edlund
,
Won H Lee
,
Dalin Li
,
David J Van Den Berg
,
David V Conti
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 402 KB
Vos balises:
english, 2008
87
A perl package and an alignment tool for phylogenetic networks
Gabriel Cardona
,
Francesc Rosselló
,
Gabriel Valiente
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 322 KB
Vos balises:
english, 2008
88
RNACompress: Grammar-based compression and informational complexity measurement of RNA secondary structure
Qi Liu
,
Yu Yang
,
Chun Chen
,
Jiajun Bu
,
Yin Zhang
,
Xiuzi Ye
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 561 KB
Vos balises:
english, 2008
89
JCoast – A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes
Michael Richter
,
Thierry Lombardot
,
Ivaylo Kostadinov
,
Renzo Kottmann
,
Melissa Beth Duhaime
,
Jörg Peplies
,
Oliver Frank Glöckner
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 890 KB
Vos balises:
english, 2008
90
Ornithine decarboxylase antizyme finder (OAF): Fast and reliable detection of antizymes with frameshifts in mRNAs
Michaël Bekaert
,
Ivaylo P Ivanov
,
John F Atkins
,
Pavel V Baranov
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 979 KB
Vos balises:
english, 2008
91
Multidimensional scaling for large genomic data sets
Jengnan Tzeng
,
Henry Horng-Shing Lu
,
Wen-Hsiung Li
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 642 KB
Vos balises:
english, 2008
92
LTRharvest, an efficient and flexible software forde novodetection of LTR retrotransposons
David Ellinghaus
,
Stefan Kurtz
,
Ute Willhoeft
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 352 KB
Vos balises:
english, 2008
93
annot8r: GO, EC and KEGG annotation of EST datasets
Ralf Schmid
,
Mark L Blaxter
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 282 KB
Vos balises:
english, 2008
94
Proteochemometric modeling of HIV protease susceptibility
Maris Lapins
,
Martin Eklund
,
Ola Spjuth
,
Peteris Prusis
,
Jarl ES Wikberg
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 450 KB
Vos balises:
english, 2008
95
Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering
Shibu Yooseph
,
Weizhong Li
,
Granger Sutton
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 815 KB
Vos balises:
english, 2008
96
Data capture in bioinformatics: requirements and experiences with Pedro
Daniel Jameson
,
Kevin Garwood
,
Chris Garwood
,
Tim Booth
,
Pinar Alper
,
Stephen G Oliver
,
Norman W Paton
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 969 KB
Vos balises:
english, 2008
97
MS-DOCK: Accurate multiple conformation generator and rigid docking protocol for multi-step virtual ligand screening
Nicolas Sauton
,
David Lagorce
,
Bruno O Villoutreix
,
Maria A Miteva
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 359 KB
Vos balises:
english, 2008
98
A high-throughput pipeline for designing microarray-based pathogen diagnostic assays
Ravi Vijaya Satya
,
Nela Zavaljevski
,
Kamal Kumar
,
Jaques Reifman
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 558 KB
Vos balises:
english, 2008
99
EST Express: PHP/MySQL based automated annotation of ESTs from expression libraries
Robin P Smith
,
William J Buchser
,
Marcus B Lemmon
,
Jose R Pardinas
,
John L Bixby
,
Vance P Lemmon
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 492 KB
Vos balises:
english, 2008
100
Significance analysis of microarray for relative quantitation of LC/MS data in proteomics
Bryan AP Roxas
,
Qingbo Li
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 419 KB
Vos balises:
english, 2008
101
A novel representation of RNA secondary structure based on element-contact graphs
Wenjie Shu
,
Xiaochen Bo
,
Zhiqiang Zheng
,
Shengqi Wang
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 856 KB
Vos balises:
english, 2008
102
Using an evolutionary algorithm and parallel computing for haplotyping in a general complex pedigree with multiple marker loci
Sang Hong Lee
,
Julius HJ Van der Werf
,
Brian P Kinghorn
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 247 KB
Vos balises:
english, 2008
103
NestedMICA as an ab initio protein motif discovery tool
Mutlu Doğruel
,
Thomas A Down
,
Tim JP Hubbard
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.89 MB
Vos balises:
english, 2008
104
Local conservation scores without a priori assumptions on neutral substitution rates
Janis Dingel
,
Pavol Hanus
,
Niccolò Leonardi
,
Joachim Hagenauer
,
Jürgen Zech
,
Jakob C Mueller
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 569 KB
Vos balises:
english, 2008
105
Novel computational methods for increasing PCR primer design effectiveness in directed sequencing
Kelvin Li
,
Anushka Brownley
,
Timothy B Stockwell
,
Karen Beeson
,
Tina C McIntosh
,
Dana Busam
,
Steve Ferriera
,
Sean Murphy
,
Samuel Levy
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 518 KB
Vos balises:
english, 2008
106
uShuffle: A useful tool for shuffling biological sequences while preserving the k-let counts
Minghui Jiang
,
James Anderson
,
Joel Gillespie
,
Martin Mayne
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 372 KB
Vos balises:
english, 2008
107
Natural Language Processing in aid of FlyBase curators
Nikiforos Karamanis
,
Ruth Seal
,
Ian Lewin
,
Peter McQuilton
,
Andreas Vlachos
,
Caroline Gasperin
,
Rachel Drysdale
,
Ted Briscoe
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 2.10 MB
Vos balises:
english, 2008
108
A probe-treatment-reference (PTR) model for the analysis of oligonucleotide expression microarrays
Huanying Ge
,
Chao Cheng
,
Lei M Li
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 2.11 MB
Vos balises:
english, 2008
109
A general approach to simultaneous model fitting and variable elimination in response models for biological data with many more variables than observations
Harri T Kiiveri
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 299 KB
Vos balises:
english, 2008
110
MPDA: Microarray pooled DNA analyzer
Hsin-Chou Yang
,
Mei-Chu Huang
,
Ling-Hui Li
,
Chien-Hsing Lin
,
Alice LT Yu
,
Mitchell B Diccianni
,
Jer-Yuarn Wu
,
Yuan-Tsong Chen
,
Cathy SJ Fann
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 3.62 MB
Vos balises:
english, 2008
111
Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research
Yoginder S Dandass
,
Shane C Burgess
,
Mark Lawrence
,
Susan M Bridges
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 249 KB
Vos balises:
english, 2008
112
Improving protein function prediction methods with integrated literature data
Aaron P Gabow
,
Sonia M Leach
,
William A Baumgartner
,
Lawrence E Hunter
,
Debra S Goldberg
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 746 KB
Vos balises:
english, 2008
113
anNET: a tool for network-embedded thermodynamic analysis of quantitative metabolome data
Nicola Zamboni
,
Anne Kümmel
,
Matthias Heinemann
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 616 KB
Vos balises:
english, 2008
114
Supervised inference of gene-regulatory networks
Cuong C To
,
Jiri Vohradsky
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 877 KB
Vos balises:
english, 2008
115
A simplified approach to disulfide connectivity prediction from protein sequences
Marc Vincent
,
Andrea Passerini
,
Matthieu Labbé
,
Paolo Frasconi
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 287 KB
Vos balises:
english, 2008
116
ParaKMeans: Implementation of a parallelized K-means algorithm suitable for general laboratory use
Piotr Kraj
,
Ashok Sharma
,
Nikhil Garge
,
Robert Podolsky
,
Richard A McIndoe
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 525 KB
Vos balises:
english, 2008
117
Identification of Proteins Secreted by Malaria Parasite into Erythrocyte using SVM and PSSM profiles
Ruchi Verma
,
Ajit Tiwari
,
Sukhwinder Kaur
,
Grish C Varshney
,
Gajendra PS Raghava
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 426 KB
Vos balises:
english, 2008
118
Missing value imputation improves clustering and interpretation of gene expression microarray data
Johannes Tuikkala
,
Laura L Elo
,
Olli S Nevalainen
,
Tero Aittokallio
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 606 KB
Vos balises:
english, 2008
119
Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data
Yuji Zhang
,
Jianhua Xuan
,
Benildo G de los Reyes
,
Robert Clarke
,
Habtom W Ressom
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.05 MB
Vos balises:
english, 2008
120
Major copy proportion analysis of tumor samples using SNP arrays
Cheng Li
,
Rameen Beroukhim
,
Barbara A Weir
,
Wendy Winckler
,
Levi A Garraway
,
William R Sellers
,
Matthew Meyerson
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 475 KB
Vos balises:
english, 2008
121
GAPscreener: An automatic tool for screening human genetic association literature in PubMed using the support vector machine technique
Wei Yu
,
Melinda Clyne
,
Siobhan M Dolan
,
Ajay Yesupriya
,
Anja Wulf
,
Tiebin Liu
,
Muin J Khoury
,
Marta Gwinn
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 706 KB
Vos balises:
english, 2008
122
VariVis: a visualisation toolkit for variation databases
Timothy D Smith
,
Richard GH Cotton
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 240 KB
Vos balises:
english, 2008
123
Extraction of semantic biomedical relations from text using conditional random fields
Markus Bundschus
,
Mathaeus Dejori
,
Martin Stetter
,
Volker Tresp
,
Hans-Peter Kriegel
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 454 KB
Vos balises:
english, 2008
124
Conserved co-expression for candidate disease gene prioritization
Martin Oti
,
Jeroen van Reeuwijk
,
Martijn A Huynen
,
Han G Brunner
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 368 KB
Vos balises:
english, 2008
125
Discovering biclusters in gene expression data based on high-dimensional linear geometries
Xiangchao Gan
,
Alan Wee-Chung Liew
,
Hong Yan
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 892 KB
Vos balises:
english, 2008
126
LeARN: a platform for detecting, clustering and annotating non-coding RNAs
Céline Noirot
,
Christine Gaspin
,
Thomas Schiex
,
Jérôme Gouzy
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 2.30 MB
Vos balises:
english, 2008
127
Identification of coherent patterns in gene expression data using an efficient biclustering algorithm and parallel coordinate visualization
Kin-On Cheng
,
Ngai-Fong Law
,
Wan-Chi Siu
,
Alan Wee-Chung Liew
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 881 KB
Vos balises:
english, 2008
128
Extracting unrecognized gene relationships from the biomedical literature via matrix factorizations
Hyunsoo Kim
,
Haesun Park
,
Barry L Drake
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 132 KB
Vos balises:
english, 2008
129
Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
Kazutaka Katoh
,
Hiroyuki Toh
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 336 KB
Vos balises:
english, 2008
130
A new protein linear motif benchmark for multiple sequence alignment software
Emmanuel Perrodou
,
Claudia Chica
,
Olivier Poch
,
Toby J Gibson
,
Julie D Thompson
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.17 MB
Vos balises:
english, 2008
131
M-BISON: Microarray-based integration of data sources using networks
Bernie J Daigle
,
Russ B Altman
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 2.65 MB
Vos balises:
english, 2008
132
Binning sequences using very sparse labels within a metagenome
Chon-Kit Kenneth Chan
,
Arthur L Hsu
,
Saman K Halgamuge
,
Sen-Lin Tang
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 2.47 MB
Vos balises:
english, 2008
133
Normalization for triple-target microarray experiments
Marie-Laure Martin-Magniette
,
Julie Aubert
,
Avner Bar-Hen
,
Samira Elftieh
,
Frederic Magniette
,
Jean-Pierre Renou
,
Jean-Jacques Daudin
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 335 KB
Vos balises:
english, 2008
134
Gene prediction in metagenomic fragments: A large scale machine learning approach
Katharina J Hoff
,
Maike Tech
,
Thomas Lingner
,
Rolf Daniel
,
Burkhard Morgenstern
,
Peter Meinicke
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 441 KB
Vos balises:
english, 2008
135
An efficient visualization tool for the analysis of protein mutation matrices
Maria Pamela C David
,
Carlo M Lapid
,
Vincent Ricardo M Daria
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 2.10 MB
Vos balises:
english, 2008
136
ConStruct: Improved construction of RNA consensus structures
Andreas Wilm
,
Kornelia Linnenbrink
,
Gerhard Steger
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 925 KB
Vos balises:
english, 2008
137
MeInfoText: associated gene methylation and cancer information from text mining
Yu-Ching Fang
,
Hsuan-Cheng Huang
,
Hsueh-Fen Juan
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 978 KB
Vos balises:
english, 2008
138
Studying the functional conservation of cis-regulatory modules and their transcriptional output
Denis C Bauer
,
Timothy L Bailey
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 387 KB
Vos balises:
english, 2008
139
Highly accurate sigmoidal fitting of real-time PCR data by introducing a parameter for asymmetry
Andrej-Nikolai Spiess
,
Caroline Feig
,
Christian Ritz
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 344 KB
Vos balises:
english, 2008
140
An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptimal folding solutions
Alexander Churkin
,
Danny Barash
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.10 MB
Vos balises:
english, 2008
141
GENOMEPOP: A program to simulate genomes in populations
Antonio Carvajal-Rodríguez
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 326 KB
Vos balises:
english, 2008
142
Implementing EM and Viterbi algorithms for Hidden Markov Model in linear memory
Alexander Churbanov
,
Stephen Winters-Hilt
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 749 KB
Vos balises:
english, 2008
143
A copula method for modeling directional dependence of genes
Jong-Min Kim
,
Yoon-Sung Jung
,
Engin A Sungur
,
Kap-Hoon Han
,
Changyi Park
,
Insuk Sohn
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 490 KB
Vos balises:
english, 2008
144
SCPRED: Accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences
Lukasz Kurgan
,
Krzysztof Cios
,
Ke Chen
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 392 KB
Vos balises:
english, 2008
145
The pairwise disconnectivity index as a new metric for the topological analysis of regulatory networks
Anatolij P Potapov
,
Björn Goemann
,
Edgar Wingender
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 372 KB
Vos balises:
english, 2008
146
Inferring the role of transcription factors in regulatory networks
Philippe Veber
,
Carito Guziolowski
,
Michel Le Borgne
,
Ovidiu Radulescu
,
Anne Siegel
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 705 KB
Vos balises:
english, 2008
147
A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences
Claudia Chica
,
Alberto Labarga
,
Cathryn M Gould
,
Rodrigo López
,
Toby J Gibson
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 550 KB
Vos balises:
english, 2008
148
Function approximation approach to the inference of reduced NGnet models of genetic networks
Shuhei Kimura
,
Katsuki Sonoda
,
Soichiro Yamane
,
Hideki Maeda
,
Koki Matsumura
,
Mariko Hatakeyama
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 373 KB
Vos balises:
english, 2008
149
CPSP-tools – Exact and complete algorithms for high-throughput 3D lattice protein studies
Martin Mann
,
Sebastian Will
,
Rolf Backofen
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 557 KB
Vos balises:
english, 2008
150
Automating dChip: toward reproducible sharing of microarray data analysis
Cheng Li
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 601 KB
Vos balises:
english, 2008
151
Bioinformatic analyses of mammalian 5'-UTR sequence properties of mRNAs predicts alternative translation initiation sites
Jill L Wegrzyn
,
Thomas M Drudge
,
Faramarz Valafar
,
Vivian Hook
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 706 KB
Vos balises:
english, 2008
152
Triad pattern algorithm for predicting strong promoter candidates in bacterial genomes
Michael Dekhtyar
,
Amelie Morin
,
Vehary Sakanyan
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 492 KB
Vos balises:
english, 2008
153
Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces
Andrew J Bordner
,
Andrey A Gorin
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 547 KB
Vos balises:
english, 2008
154
Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the Assisted Automated Assembler of Repeat Families (AAARF) algorithm
Jeremy D DeBarry
,
Renyi Liu
,
Jeffrey L Bennetzen
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 512 KB
Vos balises:
english, 2008
155
A novel series of compositionally biased substitution matrices for comparingPlasmodiumproteins
Kevin Brick
,
Elisabetta Pizzi
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.03 MB
Vos balises:
english, 2008
156
Visualization of large influenza virus sequence datasets using adaptively aggregated trees with sampling-based subscale representation
Leonid Zaslavsky
,
Yiming Bao
,
Tatiana A Tatusova
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 684 KB
Vos balises:
english, 2008
157
Alternative contingency table measures improve the power and detection of multifactor dimensionality reduction
William S Bush
,
Todd L Edwards
,
Scott M Dudek
,
Brett A McKinney
,
Marylyn D Ritchie
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.60 MB
Vos balises:
english, 2008
158
Aspects of coverage in medical DNA sequencing
Michael C Wendl
,
Richard K Wilson
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 377 KB
Vos balises:
english, 2008
159
Combining sequence-based prediction methods and circular dichroism and infrared spectroscopic data to improve protein secondary structure determinations
Jonathan G Lees
,
Robert W Janes
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 261 KB
Vos balises:
english, 2008
160
Estimating the size of the solution space of metabolic networks
Alfredo Braunstein
,
Roberto Mulet
,
Andrea Pagnani
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 3.32 MB
Vos balises:
english, 2008
161
A comparison of machine learning algorithms for chemical toxicity classification using a simulated multi-scale data model
Richard Judson
,
Fathi Elloumi
,
Woodrow R Setzer
,
Zhen Li
,
Imran Shah
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 974 KB
Vos balises:
english, 2008
162
Compressing DNA sequence databases with coil
Timothy W J White
,
Michael D Hendy
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 863 KB
Vos balises:
english, 2008
163
MD-SeeGH: a platform for integrative analysis of multi-dimensional genomic data
Bryan Chi
,
Ronald J deLeeuw
,
Bradley P Coe
,
Raymond T Ng
,
Calum MacAulay
,
Wan L Lam
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 3.78 MB
Vos balises:
english, 2008
164
Mapping gene expression quantitative trait loci by singular value decomposition and independent component analysis
Shameek Biswas
,
John D Storey
,
Joshua M Akey
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 2.13 MB
Vos balises:
english, 2008
165
Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated database of phosphorylation sites
Neil FW Saunders
,
Ross I Brinkworth
,
Thomas Huber
,
Bruce E Kemp
,
Bostjan Kobe
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 805 KB
Vos balises:
english, 2008
166
Using the longest significance run to estimate region-specific p-values in genetic association mapping studies
Ie-Bin Lian
,
Yi-Hsien Lin
,
Ying-Chao Lin
,
Hsin-Chou Yang
,
Chee-Jang Chang
,
Cathy SJ Fann
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 306 KB
Vos balises:
english, 2008
167
A visual analytics approach for understanding biclustering results from microarray data
Rodrigo Santamaría
,
Roberto Therón
,
Luis Quintales
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 2.48 MB
Vos balises:
english, 2008
168
Dinucleotide controlled null models for comparative RNA gene prediction
Tanja Gesell
,
Stefan Washietl
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 535 KB
Vos balises:
english, 2008
169
Prediction of enzyme function by combining sequence similarity and protein interactions
Jordi Espadaler
,
Narayanan Eswar
,
Enrique Querol
,
Francesc X Avilés
,
Andrej Sali
,
Marc A Marti-Renom
,
Baldomero Oliva
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 958 KB
Vos balises:
english, 2008
170
Using Generalized Procrustes Analysis (GPA) for normalization of cDNA microarray data
Huiling Xiong
,
Dapeng Zhang
,
Christopher J Martyniuk
,
Vance L Trudeau
,
Xuhua Xia
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 649 KB
Vos balises:
english, 2008
171
TileQC: A system for tile-based quality control of Solexa data
Peter C Dolan
,
Dee R Denver
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 4.68 MB
Vos balises:
english, 2008
172
Variable selection for largepsmallnregression models with incomplete data: Mapping QTL with epistases
Min Zhang
,
Dabao Zhang
,
Martin T Wells
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 734 KB
Vos balises:
english, 2008
173
Missing value imputation for microarray gene expression data using histone acetylation information
Qian Xiang
,
Xianhua Dai
,
Yangyang Deng
,
Caisheng He
,
Jiang Wang
,
Jihua Feng
,
Zhiming Dai
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 453 KB
Vos balises:
english, 2008
174
New application of intelligent agents in sporadic amyotrophic lateral sclerosis identifies unexpected specific genetic background
Silvana Penco
,
Massimo Buscema
,
Maria Cristina Patrosso
,
Alessandro Marocchi
,
Enzo Grossi
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 300 KB
Vos balises:
english, 2008
175
Protein contact order prediction from primary sequences
Yi Shi
,
Jianjun Zhou
,
David Arndt
,
David S Wishart
,
Guohui Lin
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 385 KB
Vos balises:
english, 2008
176
poolHiTS: A Shifted Transversal Design based pooling strategy for high-throughput drug screening
Raghunandan M Kainkaryam
,
Peter J Woolf
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 416 KB
Vos balises:
english, 2008
177
SODa: An Mn/Fe superoxide dismutase prediction and design server
Jean Marc Kwasigroch
,
René Wintjens
,
Dimitri Gilis
,
Marianne Rooman
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 442 KB
Vos balises:
english, 2008
178
A simple and robust method for connecting small-molecule drugs using gene-expression signatures
Shu-Dong Zhang
,
Timothy W Gant
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 351 KB
Vos balises:
english, 2008
179
Word correlation matrices for protein sequence analysis and remote homology detection
Thomas Lingner
,
Peter Meinicke
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 343 KB
Vos balises:
english, 2008
180
Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'
Alexandre Kuhn
,
Ruth Luthi-Carter
,
Mauro Delorenzi
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 511 KB
Vos balises:
english, 2008
181
GMDD: a database of GMO detection methods
Wei Dong
,
Litao Yang
,
Kailin Shen
,
Banghyun Kim
,
Gijs A Kleter
,
Hans JP Marvin
,
Rong Guo
,
Wanqi Liang
,
Dabing Zhang
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 549 KB
Vos balises:
english, 2008
182
Probe-specific mixed-model approach to detect copy number differences using multiplex ligation-dependent probe amplification (MLPA)
Juan R González
,
Josep L Carrasco
,
Lluís Armengol
,
Sergi Villatoro
,
Lluís Jover
,
Yutaka Yasui
,
Xavier Estivill
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 512 KB
Vos balises:
english, 2008
183
Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor binding sites
Nak-Kyeong Kim
,
Kannan Tharakaraman
,
Leonardo Mariño-Ramírez
,
John L Spouge
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 344 KB
Vos balises:
english, 2008
184
GPR17: Molecular modeling and dynamics studies of the 3-D structure and purinergic ligand binding features in comparison with P2Y receptors
Chiara Parravicini
,
Graziella Ranghino
,
Maria P Abbracchio
,
Piercarlo Fantucci
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 879 KB
Vos balises:
english, 2008
185
Using iterative cluster merging with improved gap statistics to perform online phenotype discovery in the context of high-throughput RNAi screens
Zheng Yin
,
Xiaobo Zhou
,
Chris Bakal
,
Fuhai Li
,
Youxian Sun
,
Norbert Perrimon
,
Stephen TC Wong
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 3.27 MB
Vos balises:
english, 2008
186
StAR: a simple tool for the statistical comparison of ROC curves
Ismael A Vergara
,
Tomás Norambuena
,
Evandro Ferrada
,
Alex W Slater
,
Francisco Melo
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 246 KB
Vos balises:
english, 2008
187
An analytic and systematic framework for estimating metabolic flux ratios from13Ctracer experiments
Ari Rantanen
,
Juho Rousu
,
Paula Jouhten
,
Nicola Zamboni
,
Hannu Maaheimo
,
Esko Ukkonen
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 529 KB
Vos balises:
english, 2008
188
Microarray data mining: A novel optimization-based approach to uncover biologically coherent structures
Meng P Tan
,
Erin N Smith
,
James R Broach
,
Christodoulos A Floudas
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.73 MB
Vos balises:
english, 2008
189
Flexible boosting of accelerated failure time models
Matthias Schmid
,
Torsten Hothorn
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 376 KB
Vos balises:
english, 2008
190
t2prhd: a tool to study the patterns of repeat evolution
Botond Sipos
,
Kálmán Somogyi
,
István Andó
,
Zsolt Pénzes
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 565 KB
Vos balises:
english, 2008
191
PageRank without hyperlinks: Reranking with PubMed related article networks for biomedical text retrieval
Jimmy Lin
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 359 KB
Vos balises:
english, 2008
192
TiGER: A database for tissue-specific gene expression and regulation
Xiong Liu
,
Xueping Yu
,
Donald J Zack
,
Heng Zhu
,
Jiang Qian
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 542 KB
Vos balises:
english, 2008
193
SiteSeek: Post-translational modification analysis using adaptive locality-effective kernel methods and new profiles
Paul D Yoo
,
Yung Shwen Ho
,
Bing Bing Zhou
,
Albert Y Zomaya
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 640 KB
Vos balises:
english, 2008
194
AMYPdb: A database dedicated to amyloid precursor proteins
Sandrine Pawlicki
,
Antony Le Béchec
,
Christian Delamarche
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 428 KB
Vos balises:
english, 2008
195
A tale of two symmetrical tails: Structural and functional characteristics of palindromes in proteins
Armita Sheari
,
Mehdi Kargar
,
Ali Katanforoush
,
Shahriar Arab
,
Mehdi Sadeghi
,
Hamid Pezeshk
,
Changiz Eslahchi
,
Sayed-Amir Marashi
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 551 KB
Vos balises:
english, 2008
196
Classification of premalignant pancreatic cancer mass-spectrometry data using decision tree ensembles
Guangtao Ge
,
G William Wong
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 503 KB
Vos balises:
english, 2008
197
Discovering functional interaction patterns in protein-protein interaction networks
Mehmet E Turanalp
,
Tolga Can
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.43 MB
Vos balises:
english, 2008
198
Semantic role labeling for protein transport predicates
Steven Bethard
,
Zhiyong Lu
,
James H Martin
,
Lawrence Hunter
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 286 KB
Vos balises:
english, 2008
199
Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species
Oliver Keller
,
Florian Odronitz
,
Mario Stanke
,
Martin Kollmar
,
Stephan Waack
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 522 KB
Vos balises:
english, 2008
200
Identifying a few foot-and-mouth disease virus signature nucleotide strings for computational genotyping
Guohui Lin
,
Zhipeng Cai
,
Junfeng Wu
,
Xiu-Feng Wan
,
Lizhe Xu
,
Randy Goebel
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 299 KB
Vos balises:
english, 2008
201
The XBabelPhish MAGE-ML and XML Translator
Don Maier
,
Farrell Wymore
,
Gavin Sherlock
,
Catherine A Ball
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 922 KB
Vos balises:
english, 2008
202
Using the information embedded in the testing sample to break the limits caused by the small sample size in microarray-based classification
Manli Zhu
,
Aleix M Martinez
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.12 MB
Vos balises:
english, 2008
203
PURE: A webserver for the prediction of domains in unassigned regions in proteins
Chilamakuri CS Reddy
,
Khader Shameer
,
Bernard O Offmann
,
Ramanathan Sowdhamini
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.28 MB
Vos balises:
english, 2008
204
The combination approach of SVM and ECOC for powerful identification and classification of transcription factor
Guangyong Zheng
,
Ziliang Qian
,
Qing Yang
,
Chaochun Wei
,
Lu Xie
,
Yangyong Zhu
,
Yixue Li
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 245 KB
Vos balises:
english, 2008
205
Improving the prediction accuracy in classification using the combined data sets by ranks of gene expressions
Ki-Yeol Kim
,
Dong Hyuk Ki
,
Hei-Cheul Jeung
,
Hyun Cheol Chung
,
Sun Young Rha
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 606 KB
Vos balises:
english, 2008
206
Methods for evaluating gene expression from Affymetrix microarray datasets
Ning Jiang
,
Lindsey J Leach
,
Xiaohua Hu
,
Elena Potokina
,
Tianye Jia
,
Arnis Druka
,
Robbie Waugh
,
Michael J Kearsey
,
Zewei W Luo
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 540 KB
Vos balises:
english, 2008
207
Precise detection of rearrangement breakpoints in mammalian chromosomes
Claire Lemaitre
,
Eric Tannier
,
Christian Gautier
,
Marie-France Sagot
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 427 KB
Vos balises:
english, 2008
208
Partial mixture model for tight clustering of gene expression time-course
Yinyin Yuan
,
Chang-Tsun Li
,
Roland Wilson
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 892 KB
Vos balises:
english, 2008
209
Genome-scale cluster analysis of replicated microarrays using shrinkage correlation coefficient
Jianchao Yao
,
Chunqi Chang
,
Mari L Salmi
,
Yeung Sam Hung
,
Ann Loraine
,
Stanley J Roux
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 477 KB
Vos balises:
english, 2008
210
Stability of gene contributions and identification of outliers in multivariate analysis of microarray data
Florent Baty
,
Daniel Jaeger
,
Frank Preiswerk
,
Martin M Schumacher
,
Martin H Brutsche
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 576 KB
Vos balises:
english, 2008
211
A nonparametric model for quality control of database search results in shotgun proteomics
Jiyang Zhang
,
Jianqi Li
,
Xin Liu
,
Hongwei Xie
,
Yunping Zhu
,
Fuchu He
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 540 KB
Vos balises:
english, 2008
212
SNPAnalyzer 2.0: A web-based integrated workbench for linkage disequilibrium analysis and association analysis
Jinho Yoo
,
Youngbok Lee
,
Yujung Kim
,
Sun Young Rha
,
Yangseok Kim
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 2.11 MB
Vos balises:
english, 2008
213
Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease
Rob Jelier
,
Peter AC 't Hoen
,
Ellen Sterrenburg
,
Johan T den Dunnen
,
Gert-Jan B van Ommen
,
Jan A Kors
,
Barend Mons
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.34 MB
Vos balises:
english, 2008
214
Estimation and testing for the effect of a genetic pathway on a disease outcome using logistic kernel machine regression via logistic mixed models
Dawei Liu
,
Debashis Ghosh
,
Xihong Lin
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 295 KB
Vos balises:
english, 2008
215
Indel PDB: A database of structural insertions and deletions derived from sequence alignments of closely related proteins
Michael Hsing
,
Artem Cherkasov
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 794 KB
Vos balises:
english, 2008
216
Relating gene expression data on two-component systems to functional annotations inEscherichia coli
Anne M Denton
,
Jianfei Wu
,
Megan K Townsend
,
Preeti Sule
,
Birgit M Prüß
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.11 MB
Vos balises:
english, 2008
217
Systems biology driven software design for the research enterprise
John Boyle
,
Christopher Cavnor
,
Sarah Killcoyne
,
Ilya Shmulevich
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 532 KB
Vos balises:
english, 2008
218
Re-searcher: a system for recurrent detection of homologous protein sequences
Valdemaras Repšys
,
Mindaugas Margelevičius
,
Česlovas Venclovas
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.12 MB
Vos balises:
english, 2008
219
Identification of deleterious non-synonymous single nucleotide polymorphisms using sequence-derived information
Jing Hu
,
Changhui Yan
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 287 KB
Vos balises:
english, 2008
220
Application of nonnegative matrix factorization to improve profile-profile alignment features for fold recognition and remote homolog detection
Inkyung Jung
,
Jaehyung Lee
,
Soo-Young Lee
,
Dongsup Kim
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.08 MB
Vos balises:
english, 2008
221
PseudoGeneQuest – Service for identification of different pseudogene types in the human genome
Csaba Ortutay
,
Mauno Vihinen
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 379 KB
Vos balises:
english, 2008
222
Extending pathways based on gene lists using InterPro domain signatures
Florian Hahne
,
Alexander Mehrle
,
Dorit Arlt
,
Annemarie Poustka
,
Stefan Wiemann
,
Tim Beissbarth
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 272 KB
Vos balises:
english, 2008
223
SignS: a parallelized, open-source, freely available, web-based tool for gene selection and molecular signatures for survival and censored data
Ramon Diaz-Uriarte
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 385 KB
Vos balises:
english, 2008
224
A novel application of quantile regression for identification of biomarkers exemplified by equine cartilage microarray data
Liping Huang
,
Wenying Zhu
,
Christopher P Saunders
,
James N MacLeod
,
Mai Zhou
,
Arnold J Stromberg
,
Arne C Bathke
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 567 KB
Vos balises:
english, 2008
225
Deducing topology of protein-protein interaction networks from experimentally measured sub-networks
Ling Yang
,
Thomas M Vondriska
,
Zhangang Han
,
W Robb MacLellan
,
James N Weiss
,
Zhilin Qu
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 472 KB
Vos balises:
english, 2008
226
2DB: a Proteomics database for storage, analysis, presentation, and retrieval of information from mass spectrometric experiments
Jens Allmer
,
Sebastian Kuhlgert
,
Michael Hippler
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 653 KB
Vos balises:
english, 2008
227
A unified approach to false discovery rate estimation
Korbinian Strimmer
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 438 KB
Vos balises:
english, 2008
228
Investigating selection on viruses: a statistical alignment approach
Saskia de Groot
,
Thomas Mailund
,
Gerton Lunter
,
Jotun Hein
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 516 KB
Vos balises:
english, 2008
229
MAID : An effect size based model for microarray data integration across laboratories and platforms
Ivan Borozan
,
Limin Chen
,
Bryan Paeper
,
Jenny E Heathcote
,
Aled M Edwards
,
Michael Katze
,
Zhaolei Zhang
,
Ian D McGilvray
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 504 KB
Vos balises:
english, 2008
230
Grammar-based distance in progressive multiple sequence alignment
David J Russell
,
Hasan H Otu
,
Khalid Sayood
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 384 KB
Vos balises:
english, 2008
231
Conditional variable importance for random forests
Carolin Strobl
,
Anne-Laure Boulesteix
,
Thomas Kneib
,
Thomas Augustin
,
Achim Zeileis
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 387 KB
Vos balises:
english, 2008
232
GenCLiP: a software program for clustering gene lists by literature profiling and constructing gene co-occurrence networks related to custom keywords
Zhong-Xi Huang
,
Hui-Yong Tian
,
Zhen-Fu Hu
,
Yi-Bo Zhou
,
Jin Zhao
,
Kai-Tai Yao
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 692 KB
Vos balises:
english, 2008
233
PRESTO: Rapid calculation of order statistic distributions and multiple-testing adjusted P-values via permutation for one and two-stage genetic association studies
Brian L Browning
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 225 KB
Vos balises:
english, 2008
234
The comparative analysis of statistics, based on the likelihood ratio criterion, in the automated annotation problem
Andrey M Leontovich
,
Konstantin Y Tokmachev
,
Hans C van Houwelingen
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 872 KB
Vos balises:
english, 2008
235
Computational identification of ubiquitylation sites from protein sequences
Chun-Wei Tung
,
Shinn-Ying Ho
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 2.75 MB
Vos balises:
english, 2008
236
Function2Gene: A gene selection tool to increase the power of genetic association studies by utilizing public databases and expert knowledge
Don L Armstrong
,
Chaim O Jacob
,
Raphael Zidovetzki
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 269 KB
Vos balises:
english, 2008
237
MSDmotif: exploring protein sites and motifs
Adel Golovin
,
Kim Henrick
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.38 MB
Vos balises:
english, 2008
238
SpliceCenter: A suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi, microarray, and peptide-based studies
Michael C Ryan
,
Barry R Zeeberg
,
Natasha J Caplen
,
James A Cleland
,
Ari B Kahn
,
Hongfang Liu
,
John N Weinstein
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 361 KB
Vos balises:
english, 2008
239
Parallel and serial computing tools for testing single-locus and epistatic SNP effects of quantitative traits in genome-wide association studies
Li Ma
,
H Birali Runesha
,
Daniel Dvorkin
,
John R Garbe
,
Yang Da
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 331 KB
Vos balises:
english, 2008
240
PatternLab for proteomics: a tool for differential shotgun proteomics
Paulo C Carvalho
,
Juliana SG Fischer
,
Emily I Chen
,
John R Yates
,
Valmir C Barbosa
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 917 KB
Vos balises:
english, 2008
241
Merging microsatellite data: enhanced methodology and software to combine genotype data for linkage and association analysis
Angela P Presson
,
Eric M Sobel
,
Paivi Pajukanta
,
Christopher Plaisier
,
Daniel E Weeks
,
Karolina Åberg
,
Jeanette C Papp
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 366 KB
Vos balises:
english, 2008
242
Directed acyclic graph kernels for structural RNA analysis
Kengo Sato
,
Toutai Mituyama
,
Kiyoshi Asai
,
Yasubumi Sakakibara
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 371 KB
Vos balises:
english, 2008
243
A comprehensive comparison of random forests and support vector machines for microarray-based cancer classification
Alexander Statnikov
,
Lily Wang
,
Constantin F Aliferis
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 552 KB
Vos balises:
english, 2008
244
Prioritization of gene regulatory interactions from large-scale modules in yeast
Ho-Joon Lee
,
Thomas Manke
,
Ricardo Bringas
,
Martin Vingron
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.73 MB
Vos balises:
english, 2008
245
Predicting protein folding pathways at the mesoscopic level based on native interactions between secondary structure elements
Qingwu Yang
,
Sing-Hoi Sze
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 757 KB
Vos balises:
english, 2008
246
GBParsy: A GenBank flatfile parser library with high speed
Tae-Ho Lee
,
Yeon-Ki Kim
,
Baek Hie Nahm
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 435 KB
Vos balises:
english, 2008
247
PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships
Cuong Than
,
Derek Ruths
,
Luay Nakhleh
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.28 MB
Vos balises:
english, 2008
248
LOSITAN: A workbench to detect molecular adaptation based on aFst-outlier method
Tiago Antao
,
Ana Lopes
,
Ricardo J Lopes
,
Albano Beja-Pereira
,
Gordon Luikart
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 368 KB
Vos balises:
english, 2008
249
Baseline Correction for NMR Spectroscopic Metabolomics Data Analysis
Yuanxin Xi
,
David M Rocke
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 701 KB
Vos balises:
english, 2008
250
A machine learning approach to explore the spectra intensity pattern of peptides using tandem mass spectrometry data
Cong Zhou
,
Lucas D Bowler
,
Jianfeng Feng
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 519 KB
Vos balises:
english, 2008
251
A new real-time PCR method to overcome significant quantitative inaccuracy due to slight amplification inhibition
Michele Guescini
,
Davide Sisti
,
Marco BL Rocchi
,
Laura Stocchi
,
Vilberto Stocchi
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.24 MB
Vos balises:
english, 2008
252
Gene Ontology term overlap as a measure of gene functional similarity
Meeta Mistry
,
Paul Pavlidis
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 3.73 MB
Vos balises:
english, 2008
253
A Java-based tool for the design of classification microarrays
Da Meng
,
Shira L Broschat
,
Douglas R Call
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 355 KB
Vos balises:
english, 2008
254
Evaluation of genomic island predictors using a comparative genomics approach
Morgan GI Langille
,
William WL Hsiao
,
Fiona SL Brinkman
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 507 KB
Vos balises:
english, 2008
255
A fast structural multiple alignment method for long RNA sequences
Yasuo Tabei
,
Hisanori Kiryu
,
Taishin Kin
,
Kiyoshi Asai
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 455 KB
Vos balises:
english, 2008
256
NullHap – a versatile application to estimate haplotype frequencies from unphased genotypes in the presence of null alleles
Robert M Nowak
,
Rafał Płoski
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 305 KB
Vos balises:
english, 2008
257
HAPSIMU: a genetic simulation platform for population-based association studies
Feng Zhang
,
Jianfeng Liu
,
Jie Chen
,
Hong-Wen Deng
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 580 KB
Vos balises:
english, 2008
258
Evolution of biological sequences implies an extreme value distribution of type I for both global and local pairwise alignment scores
Olivier Bastien
,
Eric Maréchal
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 618 KB
Vos balises:
english, 2008
259
The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes through oligonucleotide usage
Hamilton Ganesan
,
Anna S Rakitianskaia
,
Colin F Davenport
,
Burkhard Tümmler
,
Oleg N Reva
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.57 MB
Vos balises:
english, 2008
260
Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data
Peter Li
,
Juan I Castrillo
,
Giles Velarde
,
Ingo Wassink
,
Stian Soiland-Reyes
,
Stuart Owen
,
David Withers
,
Tom Oinn
,
Matthew R Pocock
,
Carole A Goble
,
Stephen G Oliver
,
Douglas B Kell
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 850 KB
Vos balises:
english, 2008
261
Combining transcriptional datasets using the generalized singular value decomposition
Andreas W Schreiber
,
Neil J Shirley
,
Rachel A Burton
,
Geoffrey B Fincher
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 431 KB
Vos balises:
english, 2008
262
Determining significance of pairwise co-occurrences of events in bursty sequences
Niina Haiminen
,
Heikki Mannila
,
Evimaria Terzi
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 698 KB
Vos balises:
english, 2008
263
Methylation Linear Discriminant Analysis (MLDA) for identifying differentially methylated CpG islands
Wei Dai
,
Jens M Teodoridis
,
Janet Graham
,
Constanze Zeller
,
Tim HM Huang
,
Pearlly Yan
,
J Keith Vass
,
Robert Brown
,
Jim Paul
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 594 KB
Vos balises:
english, 2008
264
New time-scale criteria for model simplification of bio-reaction systems
Junwon Choi
,
Kyung-won Yang
,
Tai-yong Lee
,
Sang Yup Lee
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 459 KB
Vos balises:
english, 2008
265
A general modeling and visualization tool for comparing different members of a group: application to studying tau-mediated regulation of microtubule dynamics
Arnab Bhattacharya
,
Sasha Levy
,
Adria LeBoeuf
,
Michelle Gaylord
,
Leslie Wilson
,
Ambuj K Singh
,
Stuart C Feinstein
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 343 KB
Vos balises:
english, 2008
266
A statistical toolbox for metagenomics: assessing functional diversity in microbial communities
Patrick D Schloss
,
Jo Handelsman
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 707 KB
Vos balises:
english, 2008
267
RNA STRAND: The RNA Secondary Structure and Statistical Analysis Database
Mirela Andronescu
,
Vera Bereg
,
Holger H Hoos
,
Anne Condon
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 385 KB
Vos balises:
english, 2008
268
SlowFaster, a user-friendly program for slow-fast analysis and its application on phylogeny ofBlastocystis
Martin Kostka
,
Magdalena Uzlikova
,
Ivan Cepicka
,
Jaroslav Flegr
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 313 KB
Vos balises:
english, 2008
269
SBML-SAT: a systems biology markup language (SBML) based sensitivity analysis tool
Zhike Zi
,
Yanan Zheng
,
Ann E Rundell
,
Edda Klipp
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 2.00 MB
Vos balises:
english, 2008
270
Parameter estimation for robust HMM analysis of ChIP-chip data
Peter Humburg
,
David Bulger
,
Glenn Stone
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.62 MB
Vos balises:
english, 2008
271
An enhanced partial order curve comparison algorithm and its application to analyzing protein folding trajectories
Hong Sun
,
Hakan Ferhatosmanoglu
,
Motonori Ota
,
Yusu Wang
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 864 KB
Vos balises:
english, 2008
272
VisualRepbase: an interface for the study of occurrences of transposable element families
Sébastien Tempel
,
Matthew Jurka
,
Jerzy Jurka
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 394 KB
Vos balises:
english, 2008
273
AccPbFRET: An ImageJ plugin for semi-automatic, fully corrected analysis of acceptor photobleaching FRET images
János Roszik
,
János Szöllősi
,
György Vereb
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.60 MB
Vos balises:
english, 2008
274
A robust linear regression based algorithm for automated evaluation of peptide identifications from shotgun proteomics by use of reversed-phase liquid chromatography retention time
Hua Xu
,
Lanhao Yang
,
Michael A Freitas
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 773 KB
Vos balises:
english, 2008
275
Gene Vector Analysis (Geneva): A unified method to detect differentially-regulated gene sets and similar microarray experiments
Stephen W Tanner
,
Pankaj Agarwal
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 309 KB
Vos balises:
english, 2008
276
Enhancing the prediction of protein pairings between interacting families using orthology information
Jose MG Izarzugaza
,
David Juan
,
Carles Pons
,
Florencio Pazos
,
Alfonso Valencia
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 876 KB
Vos balises:
english, 2008
277
Integration of relational and hierarchical network information for protein function prediction
Xiaoyu Jiang
,
Naoki Nariai
,
Martin Steffen
,
Simon Kasif
,
Eric D Kolaczyk
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 441 KB
Vos balises:
english, 2008
278
SynBlast: Assisting the analysis of conserved synteny information
Jörg Lehmann
,
Peter F Stadler
,
Sonja J Prohaska
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 797 KB
Vos balises:
english, 2008
279
Alignment of protein structures in the presence of domain motions
Roberto Mosca
,
Barbara Brannetti
,
Thomas R Schneider
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 3.04 MB
Vos balises:
english, 2008
280
Identification and correction of abnormal, incomplete and mispredicted proteins in public databases
Alinda Nagy
,
Hédi Hegyi
,
Krisztina Farkas
,
Hedvig Tordai
,
Evelin Kozma
,
László Bányai
,
László Patthy
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 443 KB
Vos balises:
english, 2008
281
Bayesian models and meta analysis for multiple tissue gene expression data following corticosteroid administration
Yulan Liang
,
Arpad Kelemen
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 435 KB
Vos balises:
english, 2008
282
NITPICK: peak identification for mass spectrometry data
Bernhard Y Renard
,
Marc Kirchner
,
Hanno Steen
,
Judith AJ Steen
,
Fred A Hamprecht
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 719 KB
Vos balises:
english, 2008
283
FERN – a Java framework for stochastic simulation and evaluation of reaction networks
Florian Erhard
,
Caroline C Friedel
,
Ralf Zimmer
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 533 KB
Vos balises:
english, 2008
284
Impact of residue accessible surface area on the prediction of protein secondary structures
Amir Momen-Roknabadi
,
Mehdi Sadeghi
,
Hamid Pezeshk
,
Sayed-Amir Marashi
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 338 KB
Vos balises:
english, 2008
285
TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ Strings Model
Mallika Veeramalai
,
Yuzhen Ye
,
Adam Godzik
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 2.35 MB
Vos balises:
english, 2008
286
Methodology capture: discriminating between the "best" and the rest of community practice
James M Eales
,
John W Pinney
,
Robert D Stevens
,
David L Robertson
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.42 MB
Vos balises:
english, 2008
287
Universal seeds for cDNA-to-genome comparison
Leming Zhou
,
Jonathan Stanton
,
Liliana Florea
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 477 KB
Vos balises:
english, 2008
288
TheC1C2: A framework for simultaneous model selection and assessment
Martin Eklund
,
Ola Spjuth
,
Jarl ES Wikberg
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 446 KB
Vos balises:
english, 2008
289
Combining Shapley value and statistics to the analysis of gene expression data in children exposed to air pollution
Stefano Moretti
,
Danitsja van Leeuwen
,
Hans Gmuender
,
Stefano Bonassi
,
Joost van Delft
,
Jos Kleinjans
,
Fioravante Patrone
,
Domenico Franco Merlo
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.63 MB
Vos balises:
english, 2008
290
Testing gene set enrichment for subset of genes: Sub-GSE
Xiting Yan
,
Fengzhu Sun
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 502 KB
Vos balises:
english, 2008
291
Virtual screening of GPCRs: Anin silicochemogenomics approach
Laurent Jacob
,
Brice Hoffmann
,
Véronique Stoven
,
Jean-Philippe Vert
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.09 MB
Vos balises:
english, 2008
292
Fregene: Simulation of realistic sequence-level data in populations and ascertained samples
Marc Chadeau-Hyam
,
Clive J Hoggart
,
Paul F O'Reilly
,
John C Whittaker
,
Maria De Iorio
,
David J Balding
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 598 KB
Vos balises:
english, 2008
293
Model-based clustering of DNA methylation array data: a recursive-partitioning algorithm for high-dimensional data arising as a mixture of beta distributions
E Andres Houseman
,
Brock C Christensen
,
Ru-Fang Yeh
,
Carmen J Marsit
,
Margaret R Karagas
,
Margaret Wrensch
,
Heather H Nelson
,
Joseph Wiemels
,
Shichun Zheng
,
John K Wiencke
,
Karl T Kelsey
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 807 KB
Vos balises:
english, 2008
294
ReRep: Computational detection of repetitive sequences in genome survey sequences (GSS)
Thomas D Otto
,
Leonardo HF Gomes
,
Marcelo Alves-Ferreira
,
Antonio B de Miranda
,
Wim M Degrave
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1016 KB
Vos balises:
english, 2008
295
IgTM: An algorithm to predict transmembrane domains and topology in proteins
Piedachu Peris
,
Damián López
,
Marcelino Campos
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 336 KB
Vos balises:
english, 2008
296
LOMA: A fast method to generate efficient tagged-random primers despite amplification bias of random PCR on pathogens
Wah Heng Lee
,
Christopher W Wong
,
Wan Yee Leong
,
Lance D Miller
,
Wing Kin Sung
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 732 KB
Vos balises:
english, 2008
297
Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution
Rekin's Janky
,
Jacques van Helden
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 2.14 MB
Vos balises:
english, 2008
298
Mixture models for analysis of melting temperature data
Christoffer Nellåker
,
Fredrik Uhrzander
,
Joanna Tyrcha
,
Håkan Karlsson
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 334 KB
Vos balises:
english, 2008
299
Kismeth: Analyzer of plant methylation states through bisulfite sequencing
Eyal Gruntman
,
Yijun Qi
,
R Keith Slotkin
,
Ted Roeder
,
Robert A Martienssen
,
Ravi Sachidanandam
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 2.83 MB
Vos balises:
english, 2008
300
Computational detection of significant variation in binding affinity across two sets of sequences with application to the analysis of replication origins in yeast
Uri Keich
,
Hong Gao
,
Jeffrey S Garretson
,
Anand Bhaskar
,
Ivan Liachko
,
Justin Donato
,
Bik K Tye
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 301 KB
Vos balises:
english, 2008
301
Increasing the efficiency of bacterial transcription simulations: When to exclude the genome without loss of accuracy
Marco AJ Iafolla
,
Guang Qiang Dong
,
David R McMillen
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 606 KB
Vos balises:
english, 2008
302
Large-scale identification of polymorphic microsatellites using anin silicoapproach
Jifeng Tang
,
Samantha J Baldwin
,
Jeanne ME Jacobs
,
C Gerard van der Linden
,
Roeland E Voorrips
,
Jack AM Leunissen
,
Herman van Eck
,
Ben Vosman
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 349 KB
Vos balises:
english, 2008
303
Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements
Eva Lange
,
Ralf Tautenhahn
,
Steffen Neumann
,
Clemens Gröpl
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 525 KB
Vos balises:
english, 2008
304
GenomeMatcher: A graphical user interface for DNA sequence comparison
Yoshiyuki Ohtsubo
,
Wakako Ikeda-Ohtsubo
,
Yuji Nagata
,
Masataka Tsuda
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 927 KB
Vos balises:
english, 2008
305
CBESW: Sequence Alignment on the Playstation 3
Adrianto Wirawan
,
Chee Keong Kwoh
,
Nim Tri Hieu
,
Bertil Schmidt
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 836 KB
Vos balises:
english, 2008
306
SQUAT: A web tool to mine human, murine and avian SAGE data
Johan Leyritz
,
Stéphane Schicklin
,
Sylvain Blachon
,
Céline Keime
,
Céline Robardet
,
Jean-François Boulicaut
,
Jérémy Besson
,
Ruggero G Pensa
,
Olivier Gandrillon
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.32 MB
Vos balises:
english, 2008
307
MiMiR – an integrated platform for microarray data sharing, mining and analysis
Chris Tomlinson
,
Manjula Thimma
,
Stelios Alexandrakis
,
Tito Castillo
,
Jayne L Dennis
,
Anthony Brooks
,
Thomas Bradley
,
Carly Turnbull
,
Ekaterini Blaveri
,
Geraint Barton
,
Norie Chiba
,
Klio Maratou
,
Pat
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.12 MB
Vos balises:
english, 2008
308
A semiparametric modeling framework for potential biomarker discovery and the development of metabonomic profiles
Samiran Ghosh
,
David F Grant
,
Dipak K Dey
,
Dennis W Hill
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 394 KB
Vos balises:
english, 2008
309
A Population Proportion approach for ranking differentially expressed genes
Mugdha Gadgil
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 613 KB
Vos balises:
english, 2008
310
MetWAMer: eukaryotic translation initiation site prediction
Michael E Sparks
,
Volker Brendel
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 966 KB
Vos balises:
english, 2008
311
A probabilistic framework to predict protein function from interaction data integrated with semantic knowledge
Young-Rae Cho
,
Lei Shi
,
Murali Ramanathan
,
Aidong Zhang
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 447 KB
Vos balises:
english, 2008
312
caBIG™ VISDA: Modeling, visualization, and discovery for cluster analysis of genomic data
Yitan Zhu
,
Huai Li
,
David J Miller
,
Zuyi Wang
,
Jianhua Xuan
,
Robert Clarke
,
Eric P Hoffman
,
Yue Wang
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.20 MB
Vos balises:
english, 2008
313
GlycomeDB– integration of open-access carbohydrate structure databases
René Ranzinger
,
Stephan Herget
,
Thomas Wetter
,
Claus-Wilhelm von der Lieth
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.14 MB
Vos balises:
english, 2008
314
Improving peptide-MHC class I binding prediction for unbalanced datasets
Ana Paula Sales
,
Georgia D Tomaras
,
Thomas B Kepler
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 342 KB
Vos balises:
english, 2008
315
The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes
F Meyer
,
D Paarmann
,
M D'Souza
,
R Olson
,
EM Glass
,
M Kubal
,
T Paczian
,
A Rodriguez
,
R Stevens
,
A Wilke
,
J Wilkening
,
RA Edwards
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 889 KB
Vos balises:
english, 2008
316
"TOF2H": A precision toolbox for rapid, high density/high coverage hydrogen-deuterium exchange mass spectrometry via an LC-MALDI approach, covering the data pipeline from spectral acquisition to HDX rate analysis
Pornpat Nikamanon
,
Elroy Pun
,
Wayne Chou
,
Marek D Koter
,
Paul D Gershon
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.37 MB
Vos balises:
english, 2008
317
Sequence based residue depth prediction using evolutionary information and predicted secondary structure
Hua Zhang
,
Tuo Zhang
,
Ke Chen
,
Shiyi Shen
,
Jishou Ruan
,
Lukasz Kurgan
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 850 KB
Vos balises:
english, 2008
318
miRNAminer: A tool for homologous microRNA gene search
Shay Artzi
,
Adam Kiezun
,
Noam Shomron
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 498 KB
Vos balises:
english, 2008
319
R/parallel – speeding up bioinformatics analysis with R
Gonzalo Vera
,
Ritsert C Jansen
,
Remo L Suppi
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 601 KB
Vos balises:
english, 2008
320
SSMap: A new UniProt-PDB mapping resource for the curation of structural-related information in the UniProt/Swiss-Prot Knowledgebase
Fabrice PA David
,
Yum L Yip
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 501 KB
Vos balises:
english, 2008
321
PredGPI: a GPI-anchor predictor
Andrea Pierleoni
,
Pier Luigi Martelli
,
Rita Casadio
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 334 KB
Vos balises:
english, 2008
322
HECTAR: A method to predict subcellular targeting in heterokonts
Bernhard Gschloessl
,
Yann Guermeur
,
J Mark Cock
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.13 MB
Vos balises:
english, 2008
323
Comparison study on k-word statistical measures for protein: From sequence to 'sequence space'
Qi Dai
,
Tianming Wang
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 640 KB
Vos balises:
english, 2008
324
GBNet: Deciphering regulatory rules in the co-regulated genes using a Gibbs sampler enhanced Bayesian network approach
Li Shen
,
Jie Liu
,
Wei Wang
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 636 KB
Vos balises:
english, 2008
325
FAF-Drugs2: Free ADME/tox filtering tool to assist drug discovery and chemical biology projects
David Lagorce
,
Olivier Sperandio
,
Hervé Galons
,
Maria A Miteva
,
Bruno O Villoutreix
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 365 KB
Vos balises:
english, 2008
326
Predicting protein linkages in bacteria: Which method is best depends on task
Anis Karimpour-Fard
,
Sonia M Leach
,
Ryan T Gill
,
Lawrence E Hunter
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.79 MB
Vos balises:
english, 2008
327
Modifying the DPClus algorithm for identifying protein complexes based on new topological structures
Min Li
,
Jian-er Chen
,
Jian-xin Wang
,
Bin Hu
,
Gang Chen
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 862 KB
Vos balises:
english, 2008
328
Presenting and exploring biological pathways with PathVisio
Martijn P van Iersel
,
Thomas Kelder
,
Alexander R Pico
,
Kristina Hanspers
,
Susan Coort
,
Bruce R Conklin
,
Chris Evelo
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.68 MB
Vos balises:
english, 2008
329
An open-source representation for 2-DE-centric proteomics and support infrastructure for data storage and analysis
Romesh Stanislaus
,
John M Arthur
,
Balaji Rajagopalan
,
Rick Moerschell
,
Brian McGlothlen
,
Jonas S Almeida
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 430 KB
Vos balises:
english, 2008
330
I-TASSER server for protein 3D structure prediction
Yang Zhang
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 637 KB
Vos balises:
english, 2008
331
Building blocks for automated elucidation of metabolites: Machine learning methods for NMR prediction
Stefan Kuhn
,
Björn Egert
,
Steffen Neumann
,
Christoph Steinbeck
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.76 MB
Vos balises:
english, 2008
332
Developing and validating predictive decision tree models from mining chemical structural fingerprints and high–throughput screening data in PubChem
Lianyi Han
,
Yanli Wang
,
Stephen H Bryant
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 277 KB
Vos balises:
english, 2008
333
Abbreviation definition identification based on automatic precision estimates
Sunghwan Sohn
,
Donald C Comeau
,
Won Kim
,
W John Wilbur
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 425 KB
Vos balises:
english, 2008
334
MetaMQAP: A meta-server for the quality assessment of protein models
Marcin Pawlowski
,
Michal J Gajda
,
Ryszard Matlak
,
Janusz M Bujnicki
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 5.85 MB
Vos balises:
english, 2008
335
Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells
Atsushi Niida
,
Andrew D Smith
,
Seiya Imoto
,
Shuichi Tsutsumi
,
Hiroyuki Aburatani
,
Michael Q Zhang
,
Tetsu Akiyama
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 779 KB
Vos balises:
english, 2008
336
iRefIndex: A consolidated protein interaction database with provenance
Sabry Razick
,
George Magklaras
,
Ian M Donaldson
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 555 KB
Vos balises:
english, 2008
337
BibGlimpse: The case for a light-weight reprint manager in distributed literature research
Thomas Tüchler
,
Golda Velez
,
Alexandra Graf
,
David P Kreil
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 389 KB
Vos balises:
english, 2008
338
Towards a lightweight generic computational grid framework for biological research
Mark D Halling-Brown
,
David S Moss
,
Adrian J Shepherd
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 320 KB
Vos balises:
english, 2008
339
Recovering probabilities for nucleotide trimming processes for T cell receptor TRA and TRG V-J junctions analyzed with IMGT tools
Kevin Bleakley
,
Marie-Paule Lefranc
,
Gérard Biau
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 634 KB
Vos balises:
english, 2008
340
Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios
Johan Staaf
,
Johan Vallon-Christersson
,
David Lindgren
,
Gunnar Juliusson
,
Richard Rosenquist
,
Mattias Höglund
,
Åke Borg
,
Markus Ringnér
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 3.09 MB
Vos balises:
english, 2008
341
Predicting the Interactome ofXanthomonas oryzaepathovar oryzae for target selection and DB service
Jeong-Gu Kim
,
Daeui Park
,
Byoung-Chul Kim
,
Seong-Woong Cho
,
Yeong Tae Kim
,
Young-Jin Park
,
Hee Jung Cho
,
Hyunseok Park
,
Ki-Bong Kim
,
Kyong-Oh Yoon
,
Soo-Jun Park
,
Byoung-Moo Lee
,
Jong Bhak
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 323 KB
Vos balises:
english, 2008
342
Not proper ROC curves as new tool for the analysis of differentially expressed genes in microarray experiments
Stefano Parodi
,
Vito Pistoia
,
Marco Muselli
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 527 KB
Vos balises:
english, 2008
343
Classification of drug molecules considering their IC50values using mixed-integer linear programming based hyper-boxes method
Pelin Armutlu
,
Muhittin E Ozdemir
,
Fadime Uney-Yuksektepe
,
I Halil Kavakli
,
Metin Turkay
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 461 KB
Vos balises:
english, 2008
344
Gene and pathway identification withLppenalized Bayesian logistic regression
Zhenqiu Liu
,
Ronald B Gartenhaus
,
Ming Tan
,
Feng Jiang
,
Xiaoli Jiao
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 821 KB
Vos balises:
english, 2008
345
PhySIC_IST: cleaning source trees to infer more informative supertrees
Celine Scornavacca
,
Vincent Berry
,
Vincent Lefort
,
Emmanuel JP Douzery
,
Vincent Ranwez
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 934 KB
Vos balises:
english, 2008
346
Pol II promoter prediction using characteristic 4-mer motifs: a machine learning approach
Firoz Anwar
,
Syed Murtuza Baker
,
Taskeed Jabid
,
Md Mehedi Hasan
,
Mohammad Shoyaib
,
Haseena Khan
,
Ray Walshe
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 289 KB
Vos balises:
english, 2008
347
BATS: a Bayesian user-friendly software for Analyzing Time Series microarray experiments
Claudia Angelini
,
Luisa Cutillo
,
Daniela De Canditiis
,
Margherita Mutarelli
,
Marianna Pensky
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1011 KB
Vos balises:
english, 2008
348
Knowledge-guided multi-scale independent component analysis for biomarker identification
Li Chen
,
Jianhua Xuan
,
Chen Wang
,
Ie-Ming Shih
,
Yue Wang
,
Zhen Zhang
,
Eric Hoffman
,
Robert Clarke
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 567 KB
Vos balises:
english, 2008
349
A method for analyzing censored survival phenotype with gene expression data
Tongtong Wu
,
Wei Sun
,
Shinsheng Yuan
,
Chun-Houh Chen
,
Ker-Chau Li
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 325 KB
Vos balises:
english, 2008
350
Automatically extracting functionally equivalent proteins from SwissProt
Lisa EM McMillan
,
Andrew CR Martin
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 413 KB
Vos balises:
english, 2008
351
A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using theDarkHorsealgorithm
Sheila Podell
,
Terry Gaasterland
,
Eric E Allen
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 699 KB
Vos balises:
english, 2008
352
New resampling method for evaluating stability of clusters
Irina M Gana Dresen
,
Tanja Boes
,
Johannes Huesing
,
Markus Neuhaeuser
,
Karl-Heinz Joeckel
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 320 KB
Vos balises:
english, 2008
353
XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data
Daniel N Frank
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.09 MB
Vos balises:
english, 2008
354
Bayesian modeling of recombination events in bacterial populations
Pekka Marttinen
,
Adam Baldwin
,
William P Hanage
,
Chris Dowson
,
Eshwar Mahenthiralingam
,
Jukka Corander
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.06 MB
Vos balises:
english, 2008
355
SIGMA2: A system for the integrative genomic multi-dimensional analysis of cancer genomes, epigenomes, and transcriptomes
Raj Chari
,
Bradley P Coe
,
Craig Wedseltoft
,
Marie Benetti
,
Ian M Wilson
,
Emily A Vucic
,
Calum MacAulay
,
Raymond T Ng
,
Wan L Lam
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.81 MB
Vos balises:
english, 2008
356
LC-MSsim – a simulation software for liquid chromatography mass spectrometry data
Ole Schulz-Trieglaff
,
Nico Pfeifer
,
Clemens Gröpl
,
Oliver Kohlbacher
,
Knut Reinert
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.38 MB
Vos balises:
english, 2008
357
Detection of the dominant direction of information flow and feedback links in densely interconnected regulatory networks
Iaroslav Ispolatov
,
Sergei Maslov
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 328 KB
Vos balises:
english, 2008
358
Discovery of dominant and dormant genes from expression data using a novel generalization of SNR for multi-class problems
Yu-Shuen Tsai
,
Chin-Teng Lin
,
George C Tseng
,
I-Fang Chung
,
Nikhil Ranjan Pal
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 617 KB
Vos balises:
english, 2008
359
Mining protein networks for synthetic genetic interactions
Sri R Paladugu
,
Shan Zhao
,
Animesh Ray
,
Alpan Raval
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 895 KB
Vos balises:
english, 2008
360
Homology modelling of protein-protein complexes: a simple method and its possibilities and limitations
Guillaume Launay
,
Thomas Simonson
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.18 MB
Vos balises:
english, 2008
361
SPSmart: adapting population based SNP genotype databases for fast and comprehensive web access
Jorge Amigo
,
Antonio Salas
,
Christopher Phillips
,
Ángel Carracedo
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 542 KB
Vos balises:
english, 2008
362
Pairwise covariance adds little to secondary structure prediction but improves the prediction of non-canonical local structure
Christopher Bystroff
,
Bobbie-Jo Webb-Robertson
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 944 KB
Vos balises:
english, 2008
363
Predicting biological system objectives de novo from internal state measurements
Erwin P Gianchandani
,
Matthew A Oberhardt
,
Anthony P Burgard
,
Costas D Maranas
,
Jason A Papin
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 623 KB
Vos balises:
english, 2008
364
Prediction of beta-turns at over 80% accuracy based on an ensemble of predicted secondary structures and multiple alignments
Ce Zheng
,
Lukasz Kurgan
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 365 KB
Vos balises:
english, 2008
365
Probabilistic base calling of Solexa sequencing data
Jacques Rougemont
,
Arnaud Amzallag
,
Christian Iseli
,
Laurent Farinelli
,
Ioannis Xenarios
,
Felix Naef
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 504 KB
Vos balises:
english, 2008
366
easyExon – A Java-based GUI tool for processing and visualization of Affymetrix exon array data
Ting-Yu Chang
,
Yin-Yi Li
,
Chih-Hung Jen
,
Tsun-Po Yang
,
Chi-Hung Lin
,
Ming-Ta Hsu
,
Hsei-Wei Wang
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 884 KB
Vos balises:
english, 2008
367
Reranking candidate gene models with cross-species comparison for improved gene prediction
Qian Liu
,
Koby Crammer
,
Fernando CN Pereira
,
David S Roos
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 678 KB
Vos balises:
english, 2008
368
Comparative optimism in models involving both classical clinical and gene expression information
Caroline Truntzer
,
Delphine Maucort-Boulch
,
Pascal Roy
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 310 KB
Vos balises:
english, 2008
369
Multi-agent systems in epidemiology: a first step for computational biology in the study of vector-borne disease transmission
Benjamin Roche
,
Jean-François Guégan
,
François Bousquet
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 306 KB
Vos balises:
english, 2008
370
OntoDas – a tool for facilitating the construction of complex queries to the Gene Ontology
Kieran O'Neill
,
Alexander Garcia
,
Anita Schwegmann
,
Rafael C Jimenez
,
Dan Jacobson
,
Henning Hermjakob
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.25 MB
Vos balises:
english, 2008
371
AMMOS: Automated Molecular Mechanics Optimization tool forin silicoScreening
Tania Pencheva
,
David Lagorce
,
Ilza Pajeva
,
Bruno O Villoutreix
,
Maria A Miteva
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 970 KB
Vos balises:
english, 2008
372
CMA – a comprehensive Bioconductor package for supervised classification with high dimensional data
M Slawski
,
M Daumer
,
A-L Boulesteix
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 452 KB
Vos balises:
english, 2008
373
Generating samples for association studies based on HapMap data
Jing Li
,
Yixuan Chen
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 708 KB
Vos balises:
english, 2008
374
PlasmoDraft: a database ofPlasmodium falciparumgene function predictions based on postgenomic data
Laurent Bréhélin
,
Jean-François Dufayard
,
Olivier Gascuel
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.52 MB
Vos balises:
english, 2008
375
Structural assembly of two-domain proteins by rigid-body docking
Tammy MK Cheng
,
Tom L Blundell
,
Juan Fernandez-Recio
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.55 MB
Vos balises:
english, 2008
376
Evading the annotation bottleneck: using sequence similarity to search non-sequence gene data
Michael J Gilchrist
,
Mikkel B Christensen
,
Richard Harland
,
Nicolas Pollet
,
James C Smith
,
Naoto Ueno
,
Nancy Papalopulu
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 451 KB
Vos balises:
english, 2008
377
Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics
Wiebke Timm
,
Alexandra Scherbart
,
Sebastian Böcker
,
Oliver Kohlbacher
,
Tim W Nattkemper
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 712 KB
Vos balises:
english, 2008
378
Assessment of protein set coherence using functional annotations
Monica Chagoyen
,
Jose M Carazo
,
Alberto Pascual-Montano
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 699 KB
Vos balises:
english, 2008
379
An incremental approach to automated protein localisation
Marko Tscherepanow
,
Nickels Jensen
,
Franz Kummert
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 607 KB
Vos balises:
english, 2008
380
Envelope: interactive software for modeling and fitting complex isotope distributions
Michael T Sykes
,
James R Williamson
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 548 KB
Vos balises:
english, 2008
381
Identification of hot-spot residues in protein-protein interactions by computational docking
Solène Grosdidier
,
Juan Fernández-Recio
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 994 KB
Vos balises:
english, 2008
382
Volume-based solvation models out-perform area-based models in combined studies of wild-type and mutated protein-protein interfaces
Salim Bougouffa
,
Jim Warwicker
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 790 KB
Vos balises:
english, 2008
383
A machine vision system for automated non-invasive assessment of cell viability via dark field microscopy, wavelet feature selection and classification
Ning Wei
,
Erwin Flaschel
,
Karl Friehs
,
Tim Wilhelm Nattkemper
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 827 KB
Vos balises:
english, 2008
384
A genetic approach for building different alphabets for peptide and protein classification
Loris Nanni
,
Alessandra Lumini
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 664 KB
Vos balises:
english, 2008
385
Bluejay 1.0: genome browsing and comparison with rich customization provision and dynamic resource linking
Jung Soh
,
Paul MK Gordon
,
Morgan L Taschuk
,
Anguo Dong
,
Andrew C Ah-Seng
,
Andrei L Turinsky
,
Christoph W Sensen
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.14 MB
Vos balises:
english, 2008
386
Feature selection environment for genomic applications
Fabrício Martins Lopes
,
David Corrêa Martins
,
Roberto M Cesar
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 891 KB
Vos balises:
english, 2008
387
Background correction using dinucleotide affinities improves the performance of GCRMA
Raad Z Gharaibeh
,
Anthony A Fodor
,
Cynthia J Gibas
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 454 KB
Vos balises:
english, 2008
388
Probe signal correction for differential methylation hybridization experiments
Dustin P Potter
,
Pearlly Yan
,
Tim HM Huang
,
Shili Lin
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.40 MB
Vos balises:
english, 2008
389
In silicoanalysis of methyltransferase domains involved in biosynthesis of secondary metabolites
Mohd Zeeshan Ansari
,
Jyoti Sharma
,
Rajesh S Gokhale
,
Debasisa Mohanty
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 4.79 MB
Vos balises:
english, 2008
390
CompMoby: Comparative MobyDick for detection of cis-regulatory motifs
Christina Chaivorapol
,
Collin Melton
,
Grace Wei
,
Ru-Fang Yeh
,
Miguel Ramalho-Santos
,
Robert Blelloch
,
Hao Li
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.67 MB
Vos balises:
english, 2008
391
FUNYBASE: a FUNgal phYlogenomic dataBASE
Sylvain Marthey
,
Gabriela Aguileta
,
François Rodolphe
,
Annie Gendrault
,
Tatiana Giraud
,
Elisabeth Fournier
,
Manuela Lopez-Villavicencio
,
Angélique Gautier
,
Marc-Henri Lebrun
,
Hélène Chiapello
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.72 MB
Vos balises:
english, 2008
392
Identification of a small optimal subset of CpG sites as bio-markers from high-throughput DNA methylation profiles
Hailong Meng
,
Edward L Murrelle
,
Guoya Li
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 465 KB
Vos balises:
english, 2008
393
Biclustering via optimal re-ordering of data matrices in systems biology: rigorous methods and comparative studies
Peter A DiMaggio
,
Scott R McAllister
,
Christodoulos A Floudas
,
Xiao-Jiang Feng
,
Joshua D Rabinowitz
,
Herschel A Rabitz
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1011 KB
Vos balises:
english, 2008
394
MetaMine – A tool to detect and analyse gene patterns in their environmental context
Uta Bohnebeck
,
Thierry Lombardot
,
Renzo Kottmann
,
Frank O Glöckner
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.10 MB
Vos balises:
english, 2008
395
EzArray: A web-based highly automated Affymetrix expression array data management and analysis system
Yuerong Zhu
,
Yuelin Zhu
,
Wei Xu
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 809 KB
Vos balises:
english, 2008
396
A new method for 2D gel spot alignment: application to the analysis of large sample sets in clinical proteomics
Sabine Pérès
,
Laurence Molina
,
Nicolas Salvetat
,
Claude Granier
,
Franck Molina
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 862 KB
Vos balises:
english, 2008
397
minet: A R/Bioconductor Package for Inferring Large Transcriptional Networks Using Mutual Information
Patrick E Meyer
,
Frédéric Lafitte
,
Gianluca Bontempi
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 322 KB
Vos balises:
english, 2008
398
Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer
Raffaele Giancarlo
,
Davide Scaturro
,
Filippo Utro
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.11 MB
Vos balises:
english, 2008
399
Information-based methods for predicting gene function from systematic gene knock-downs
Matthew T Weirauch
,
Christopher K Wong
,
Alexandra B Byrne
,
Joshua M Stuart
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 965 KB
Vos balises:
english, 2008
400
Neutral network sizes of biological RNA molecules can be computed and are not atypically small
Thomas Jörg
,
Olivier C Martin
,
Andreas Wagner
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 438 KB
Vos balises:
english, 2008
401
Hierarchical structure of cascade of primary and secondary periodicities in Fourier power spectrum of alphoid higher order repeats
Vladimir Paar
,
Nenad Pavin
,
Ivan Basar
,
Marija Rosandić
,
Matko Glunčić
,
Nils Paar
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 2.32 MB
Vos balises:
english, 2008
402
Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual information
Weijun Luo
,
Kurt D Hankenson
,
Peter J Woolf
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.40 MB
Vos balises:
english, 2008
403
A relation based measure of semantic similarity for Gene Ontology annotations
Brendan Sheehan
,
Aaron Quigley
,
Benoit Gaudin
,
Simon Dobson
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 549 KB
Vos balises:
english, 2008
404
Gene set analyses for interpreting microarray experiments on prokaryotic organisms
Nathan L Tintle
,
Aaron A Best
,
Matthew DeJongh
,
Dirk Van Bruggen
,
Fred Heffron
,
Steffen Porwollik
,
Ronald C Taylor
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 356 KB
Vos balises:
english, 2008
405
Discrimination of outer membrane proteins with improved performance
Changhui Yan
,
Jing Hu
,
Yingfeng Wang
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 287 KB
Vos balises:
english, 2008
406
MetaFIND: A feature analysis tool for metabolomics data
Kenneth Bryan
,
Lorraine Brennan
,
Pádraig Cunningham
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.09 MB
Vos balises:
english, 2008
407
Psiscan: a computational approach to identify H/ACA-like and AGA-like non-coding RNA in trypanosomatid genomes
Inna Myslyuk
,
Tirza Doniger
,
Yair Horesh
,
Avraham Hury
,
Ran Hoffer
,
Yaara Ziporen
,
Shulamit Michaeli
,
Ron Unger
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.76 MB
Vos balises:
english, 2008
408
Evaluation of GO-based functional similarity measures usingS. cerevisiaeprotein interaction and expression profile data
Tao Xu
,
LinFang Du
,
Yan Zhou
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 779 KB
Vos balises:
english, 2008
409
Nuclear staining and relative distance for quantifying epidermal differentiation in biomarker expression profiling
Thora Pommerencke
,
Thorsten Steinberg
,
Hartmut Dickhaus
,
Pascal Tomakidi
,
Niels Grabe
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.19 MB
Vos balises:
english, 2008
410
RNAalifold: improved consensus structure prediction for RNA alignments
Stephan H Bernhart
,
Ivo L Hofacker
,
Sebastian Will
,
Andreas R Gruber
,
Peter F Stadler
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 398 KB
Vos balises:
english, 2008
411
Standardized high-throughput evaluation of cell-based compound screens
Peter Frommolt
,
Roman K Thomas
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 292 KB
Vos balises:
english, 2008
412
Improved identification of conserved cassette exons using Bayesian networks
Rileen Sinha
,
Michael Hiller
,
Rainer Pudimat
,
Ulrike Gausmann
,
Matthias Platzer
,
Rolf Backofen
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 530 KB
Vos balises:
english, 2008
413
RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences
James K Hane
,
Richard P Oliver
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 702 KB
Vos balises:
english, 2008
414
The Average Mutual Information Profile as a Genomic Signature
Mark Bauer
,
Sheldon M Schuster
,
Khalid Sayood
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.50 MB
Vos balises:
english, 2008
415
A Web-based and Grid-enabled dChip version for the analysis of large sets of gene expression data
Luca Corradi
,
Marco Fato
,
Ivan Porro
,
Silvia Scaglione
,
Livia Torterolo
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 557 KB
Vos balises:
english, 2008
416
Gene set enrichment analysis for non-monotone association and multiple experimental categories
Rongheng Lin
,
Shuangshuang Dai
,
Richard D Irwin
,
Alexandra N Heinloth
,
Gary A Boorman
,
Leping Li
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 373 KB
Vos balises:
english, 2008
417
CellProfiler Analyst: data exploration and analysis software for complex image-based screens
Thouis R Jones
,
In Han Kang
,
Douglas B Wheeler
,
Robert A Lindquist
,
Adam Papallo
,
David M Sabatini
,
Polina Golland
,
Anne E Carpenter
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 5.31 MB
Vos balises:
english, 2008
418
mtDNAmanager: a Web-based tool for the management and quality analysis of mitochondrial DNA control-region sequences
Hwan Young Lee
,
Injee Song
,
Eunho Ha
,
Sung-Bae Cho
,
Woo Ick Yang
,
Kyoung-Jin Shin
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 2.28 MB
Vos balises:
english, 2008
419
Genome-scale study of the importance of binding site context for transcription factor binding and gene regulation
Jakub Orzechowski Westholm
,
Feifei Xu
,
Hans Ronne
,
Jan Komorowski
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 375 KB
Vos balises:
english, 2008
420
CrossHybDetector: detection of cross-hybridization events in DNA microarray experiments
Paolo Uva
,
Emanuele de Rinaldis
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 277 KB
Vos balises:
english, 2008
421
Expression profiles of switch-like genes accurately classify tissue and infectious disease phenotypes in model-based classification
Michael Gormley
,
Aydin Tozeren
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 2.76 MB
Vos balises:
english, 2008
422
Use of machine learning algorithms to classify binary protein sequences as highly-designable or poorly-designable
Myron Peto
,
Andrzej Kloczkowski
,
Vasant Honavar
,
Robert L Jernigan
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 506 KB
Vos balises:
english, 2008
423
Identifying differential correlation in gene/pathway combinations
Rosemary Braun
,
Leslie Cope
,
Giovanni Parmigiani
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 466 KB
Vos balises:
english, 2008
424
Determining gene expression on a single pair of microarrays
Robert W Reid
,
Anthony A Fodor
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 453 KB
Vos balises:
english, 2008
425
A dynamic Bayesian network approach to protein secondary structure prediction
Xin-Qiu Yao
,
Huaiqiu Zhu
,
Zhen-Su She
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 581 KB
Vos balises:
english, 2008
426
A comparison of four clustering methods for brain expression microarray data
Alexander L Richards
,
Peter Holmans
,
Michael C O'Donovan
,
Michael J Owen
,
Lesley Jones
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.01 MB
Vos balises:
english, 2008
427
Prediction of specificity-determining residues for small-molecule kinase inhibitors
Daniel R Caffrey
,
Elizabeth A Lunney
,
Deborah J Moshinsky
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.15 MB
Vos balises:
english, 2008
428
Structural descriptor database: a new tool for sequence-based functional site prediction
Juliana S Bernardes
,
Jorge H Fernandez
,
Ana Tereza R Vasconcelos
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 586 KB
Vos balises:
english, 2008
429
EMAAS: An extensible grid-based Rich Internet Application for microarray data analysis and management
G Barton
,
J Abbott
,
N Chiba
,
DW Huang
,
Y Huang
,
M Krznaric
,
J Mack-Smith
,
A Saleem
,
BT Sherman
,
B Tiwari
,
C Tomlinson
,
T Aitman
,
J Darlington
,
L Game
,
MJE Sternberg
,
SA Butcher
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.51 MB
Vos balises:
english, 2008
430
ExonMiner: Web service for analysis of GeneChip Exon array data
Kazuyuki Numata
,
Ryo Yoshida
,
Masao Nagasaki
,
Ayumu Saito
,
Seiya Imoto
,
Satoru Miyano
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.54 MB
Vos balises:
english, 2008
431
CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes
Matthew S Hestand
,
Michiel van Galen
,
Michel P Villerius
,
Gert-Jan B van Ommen
,
Johan T den Dunnen
,
Peter AC 't Hoen
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 797 KB
Vos balises:
english, 2008
432
Models of deletion for visualizing bacterial variation: an application to tuberculosis spoligotypes
Josephine F Reyes
,
Andrew R Francis
,
Mark M Tanaka
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 616 KB
Vos balises:
english, 2008
433
MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level
Hélène Chiapello
,
Annie Gendrault
,
Christophe Caron
,
Jérome Blum
,
Marie-Agnès Petit
,
Meriem El Karoui
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.51 MB
Vos balises:
english, 2008
434
Natural computation meta-heuristics for the in silico optimization of microbial strains
Miguel Rocha
,
Paulo Maia
,
Rui Mendes
,
José P Pinto
,
Eugénio C Ferreira
,
Jens Nielsen
,
Kiran Raosaheb Patil
,
Isabel Rocha
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 4.68 MB
Vos balises:
english, 2008
435
EST2uni: an open, parallel tool for automated EST analysis and database creation, with a data mining web interface and microarray expression data integration
Javier Forment
,
Francisco Gilabert
,
Antonio Robles
,
Vicente Conejero
,
Fernando Nuez
,
Jose M Blanca
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 629 KB
Vos balises:
english, 2008
436
Defining functional distances over Gene Ontology
Angela del Pozo
,
Florencio Pazos
,
Alfonso Valencia
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.13 MB
Vos balises:
english, 2008
437
Prediction of glycosylation sites using random forests
Stephen E Hamby
,
Jonathan D Hirst
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.24 MB
Vos balises:
english, 2008
438
Genome Environment Browser (GEB): a dynamic browser for visualising high-throughput experimental data in the context of genome features
Derek Huntley
,
Y Amy Tang
,
Tatyana B Nesterova
,
Sarah Butcher
,
Neil Brockdorff
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.68 MB
Vos balises:
english, 2008
439
Microarray-based gene set analysis: a comparison of current methods
Sarah Song
,
Michael A Black
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.44 MB
Vos balises:
english, 2008
440
ESLpred2: improved method for predicting subcellular localization of eukaryotic proteins
Aarti Garg
,
Gajendra PS Raghava
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 253 KB
Vos balises:
english, 2008
441
Highly sensitive feature detection for high resolution LC/MS
Ralf Tautenhahn
,
Christoph Böttcher
,
Steffen Neumann
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 612 KB
Vos balises:
english, 2008
442
Use of normalization methods for analysis of microarrays containing a high degree of gene effects
Terri T Ni
,
William J Lemon
,
Yu Shyr
,
Tao P Zhong
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 469 KB
Vos balises:
english, 2008
443
c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
Katerina Kechris
,
Hao Li
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 288 KB
Vos balises:
english, 2008
444
MetaboMiner – semi-automated identification of metabolites from 2D NMR spectra of complex biofluids
Jianguo Xia
,
Trent C Bjorndahl
,
Peter Tang
,
David S Wishart
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 441 KB
Vos balises:
english, 2008
445
Unsupervised reduction of random noise in complex data by a row-specific, sorted principal component-guided method
Joseph W Foley
,
Fumiaki Katagiri
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 2.51 MB
Vos balises:
english, 2008
446
Position dependent mismatch discrimination on DNA microarrays – experiments and model
Thomas Naiser
,
Jona Kayser
,
Timo Mai
,
Wolfgang Michel
,
Albrecht Ott
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 800 KB
Vos balises:
english, 2008
447
The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction
Jonathan R Manning
,
Emily R Jefferson
,
Geoffrey J Barton
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.56 MB
Vos balises:
english, 2008
448
A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic analysis
Bin Liu
,
Xiaolong Wang
,
Lei Lin
,
Qiwen Dong
,
Xuan Wang
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 2.33 MB
Vos balises:
english, 2008
449
Comparison of methods for estimating the nucleotide substitution matrix
Maribeth Oscamou
,
Daniel McDonald
,
Von Bing Yap
,
Gavin A Huttley
,
Manuel E Lladser
,
Rob Knight
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 415 KB
Vos balises:
english, 2008
450
A Bayesian calibration model for combining different pre-processing methods in Affymetrix chips
Marta Blangiardo
,
Sylvia Richardson
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 693 KB
Vos balises:
english, 2008
451
Inference of haplotypic phase and missing genotypes in polyploid organisms and variable copy number genomic regions
Shu-Yi Su
,
Jonathan White
,
David J Balding
,
Lachlan JM Coin
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 842 KB
Vos balises:
english, 2008
452
ElliPro: a new structure-based tool for the prediction of antibody epitopes
Julia Ponomarenko
,
Huynh-Hoa Bui
,
Wei Li
,
Nicholas Fusseder
,
Philip E Bourne
,
Alessandro Sette
,
Bjoern Peters
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 2.04 MB
Vos balises:
english, 2008
453
Improved machine learning method for analysis of gas phase chemistry of peptides
Allison Gehrke
,
Shaojun Sun
,
Lukasz Kurgan
,
Natalie Ahn
,
Katheryn Resing
,
Karen Kafadar
,
Krzysztof Cios
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 496 KB
Vos balises:
english, 2008
454
A fast algorithm for the multiple genome rearrangement problem with weighted reversals and transpositions
Martin Bader
,
Mohamed I Abouelhoda
,
Enno Ohlebusch
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 353 KB
Vos balises:
english, 2008
455
Detection of protein catalytic residues at high precision using local network properties
Patrick Slama
,
Ioannis Filippis
,
Michael Lappe
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1020 KB
Vos balises:
english, 2008
456
Algorithm of OMA for large-scale orthology inference
Alexander CJ Roth
,
Gaston H Gonnet
,
Christophe Dessimoz
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 406 KB
Vos balises:
english, 2008
457
Integrated multi-level quality control for proteomic profiling studies using mass spectrometry
David A Cairns
,
David N Perkins
,
Anthea J Stanley
,
Douglas Thompson
,
Jennifer H Barrett
,
Peter J Selby
,
Rosamonde E Banks
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.25 MB
Vos balises:
english, 2008
458
The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation
Chenggang Yu
,
Nela Zavaljevski
,
Valmik Desai
,
Seth Johnson
,
Fred J Stevens
,
Jaques Reifman
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 546 KB
Vos balises:
english, 2008
459
Global rank-invariant set normalization (GRSN) to reduce systematic distortions in microarray data
Carl R Pelz
,
Molly Kulesz-Martin
,
Grover Bagby
,
Rosalie C Sears
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.90 MB
Vos balises:
english, 2008
460
An efficient genetic algorithm for structural RNA pairwise alignment and its application to non-coding RNA discovery in yeast
Akito Taneda
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.56 MB
Vos balises:
english, 2008
461
Systematic identification of yeast cell cycle transcription factors using multiple data sources
Wei-Sheng Wu
,
Wen-Hsiung Li
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 509 KB
Vos balises:
english, 2008
462
Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks
David A Nix
,
Samir J Courdy
,
Kenneth M Boucher
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.51 MB
Vos balises:
english, 2008
463
IDEA: Interactive Display for Evolutionary Analyses
Amy Egan
,
Anup Mahurkar
,
Jonathan Crabtree
,
Jonathan H Badger
,
Jane M Carlton
,
Joana C Silva
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.51 MB
Vos balises:
english, 2008
464
Multi-label literature classification based on the Gene Ontology graph
Bo Jin
,
Brian Muller
,
Chengxiang Zhai
,
Xinghua Lu
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 484 KB
Vos balises:
english, 2008
465
SNPFile – A software library and file format for large scale association mapping and population genetics studies
Jesper Nielsen
,
Thomas Mailund
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 246 KB
Vos balises:
english, 2008
466
Compo: composite motif discovery using discrete models
Geir Kjetil Sandve
,
Osman Abul
,
Finn Drabløs
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 359 KB
Vos balises:
english, 2008
467
Gene Prospector: An evidence gateway for evaluating potential susceptibility genes and interacting risk factors for human diseases
Wei Yu
,
Anja Wulf
,
Tiebin Liu
,
Muin J Khoury
,
Marta Gwinn
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 367 KB
Vos balises:
english, 2008
468
The APEX Quantitative Proteomics Tool: Generating protein quantitation estimates from LC-MS/MS proteomics results
John C Braisted
,
Srilatha Kuntumalla
,
Christine Vogel
,
Edward M Marcotte
,
Alan R Rodrigues
,
Rong Wang
,
Shih-Ting Huang
,
Erik S Ferlanti
,
Alexander I Saeed
,
Robert D Fleischmann
,
Scott N Peterson
,
Remb
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.35 MB
Vos balises:
english, 2008
469
TOBFAC: the database of tobacco transcription factors
Paul J Rushton
,
Marta T Bokowiec
,
Thomas W Laudeman
,
Jennifer F Brannock
,
Xianfeng Chen
,
Michael P Timko
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 994 KB
Vos balises:
english, 2008
470
ReplicationDomain: a visualization tool and comparative database for genome-wide replication timing data
Nodin Weddington
,
Alexander Stuy
,
Ichiro Hiratani
,
Tyrone Ryba
,
Tomoki Yokochi
,
David M Gilbert
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.54 MB
Vos balises:
english, 2008
471
Fr-TM-align: a new protein structural alignment method based on fragment alignments and the TM-score
Shashi Bhushan Pandit
,
Jeffrey Skolnick
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 6.36 MB
Vos balises:
english, 2008
472
Extended Newick: it is time for a standard representation of phylogenetic networks
Gabriel Cardona
,
Francesc Rosselló
,
Gabriel Valiente
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.10 MB
Vos balises:
english, 2008
473
GPAT: Retrieval of genomic annotation from large genomic position datasets
Arnaud Krebs
,
Mattia Frontini
,
Làszlò Tora
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 306 KB
Vos balises:
english, 2008
474
Optimal neighborhood indexing for protein similarity search
Pierre Peterlongo
,
Laurent Noé
,
Dominique Lavenier
,
Van Hoa Nguyen
,
Gregory Kucherov
,
Mathieu Giraud
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.00 MB
Vos balises:
english, 2008
475
DISCLOSE : DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcription factor binding sites
Evert-Jan Blom
,
Sacha AFT van Hijum
,
Klaas J Hofstede
,
Remko Silvis
,
Jos BTM Roerdink
,
Oscar P Kuipers
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.45 MB
Vos balises:
english, 2008
476
SynteBase/SynteView: a tool to visualize gene order conservation in prokaryotic genomes
Frédéric Lemoine
,
Bernard Labedan
,
Olivier Lespinet
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 932 KB
Vos balises:
english, 2008
477
A compatible exon-exon junction database for the identification of exon skipping events using tandem mass spectrum data
Fan Mo
,
Xu Hong
,
Feng Gao
,
Lin Du
,
Jun Wang
,
Gilbert S Omenn
,
Biaoyang Lin
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 763 KB
Vos balises:
english, 2008
478
Pep-3D-Search: a method for B-cell epitope prediction based on mimotope analysis
Yan Xin Huang
,
Li Yong Bao
,
Shu Yan Guo
,
Yan Wang
,
Chun Guang Zhou
,
Yu Xin Li
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 570 KB
Vos balises:
english, 2008
479
Nonparametric relevance-shifted multiple testing procedures for the analysis of high-dimensional multivariate data with small sample sizes
Cornelia Frömke
,
Ludwig A Hothorn
,
Siegfried Kropf
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 307 KB
Vos balises:
english, 2008
480
Shape-IT: new rapid and accurate algorithm for haplotype inference
Olivier Delaneau
,
Cédric Coulonges
,
Jean-François Zagury
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 396 KB
Vos balises:
english, 2008
481
GeNESiS: gene network evolution simulation software
Anton Kratz
,
Masaru Tomita
,
Arun Krishnan
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 543 KB
Vos balises:
english, 2008
482
Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics
Mi-Youn Brusniak
,
Bernd Bodenmiller
,
David Campbell
,
Kelly Cooke
,
James Eddes
,
Andrew Garbutt
,
Hollis Lau
,
Simon Letarte
,
Lukas N Mueller
,
Vagisha Sharma
,
Olga Vitek
,
Ning Zhang
,
Ruedi Aebersold
,
Juli
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 4.07 MB
Vos balises:
english, 2008
483
PocketMatch: A new algorithm to compare binding sites in protein structures
Kalidas Yeturu
,
Nagasuma Chandra
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 2.15 MB
Vos balises:
english, 2008
484
AnEnPi: identification and annotation of analogous enzymes
Thomas D Otto
,
Carolina R Ana Guimarães
,
Wim M Degrave
,
Antonio B de Miranda
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 424 KB
Vos balises:
english, 2008
485
Examining the significance of fingerprint-based classifiers
Brian T Luke
,
Jack R Collins
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 326 KB
Vos balises:
english, 2008
486
Barcodes for genomes and applications
Fengfeng Zhou
,
Victor Olman
,
Ying Xu
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 2.00 MB
Vos balises:
english, 2008
487
Prediction of regulatory elements in mammalian genomes using chromatin signatures
Kyoung-Jae Won
,
Iouri Chepelev
,
Bing Ren
,
Wei Wang
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.34 MB
Vos balises:
english, 2008
488
GeneChaser: Identifying all biological and clinical conditions in which genes of interest are differentially expressed
Rong Chen
,
Rohan Mallelwar
,
Ajit Thosar
,
Shivkumar Venkatasubrahmanyam
,
Atul J Butte
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 284 KB
Vos balises:
english, 2008
489
nGASP – the nematode genome annotation assessment project
Avril Coghlan
,
Tristan J Fiedler
,
Sheldon J McKay
,
Paul Flicek
,
Todd W Harris
,
Darin Blasiar
,
the nGASP Consortium
,
Lincoln D Stein
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.81 MB
Vos balises:
english, 2008
490
Designing multiple degenerate primers via consecutive pairwise alignments
Hamed Shateri Najafabadi
,
Noorossadat Torabi
,
Mahmood Chamankhah
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 711 KB
Vos balises:
english, 2008
491
Pathological rate matrices: from primates to pathogens
Harold W Schranz
,
Von Bing Yap
,
Simon Easteal
,
Rob Knight
,
Gavin A Huttley
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 595 KB
Vos balises:
english, 2008
492
Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network
Matteo Brilli
,
Alessio Mengoni
,
Marco Fondi
,
Marco Bazzicalupo
,
Pietro Liò
,
Renato Fani
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.47 MB
Vos balises:
english, 2008
493
GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments
Andreas Keller
,
Christina Backes
,
Maher Al-Awadhi
,
Andreas Gerasch
,
Jan Küntzer
,
Oliver Kohlbacher
,
Michael Kaufmann
,
Hans-Peter Lenhof
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 656 KB
Vos balises:
english, 2008
494
Prediction of protein-protein binding site by using core interface residue and support vector machine
Nan Li
,
Zhonghua Sun
,
Fan Jiang
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 498 KB
Vos balises:
english, 2008
495
RPPAML/RIMS: A metadata format and an information management system for reverse phase protein arrays
Romesh Stanislaus
,
Mark Carey
,
Helena F Deus
,
Kevin Coombes
,
Bryan T Hennessy
,
Gordon B Mills
,
Jonas S Almeida
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 885 KB
Vos balises:
english, 2008
496
The meaning of alignment: lessons from structural diversity
Walter Pirovano
,
K Anton Feenstra
,
Jaap Heringa
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.53 MB
Vos balises:
english, 2008
497
SimHap GUI: An intuitive graphical user interface for genetic association analysis
Kim W Carter
,
Pamela A McCaskie
,
Lyle J Palmer
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 486 KB
Vos balises:
english, 2008
498
SPRINT: A new parallel framework for R
Jon Hill
,
Matthew Hambley
,
Thorsten Forster
,
Muriel Mewissen
,
Terence M Sloan
,
Florian Scharinger
,
Arthur Trew
,
Peter Ghazal
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 280 KB
Vos balises:
english, 2008
499
A phase synchronization clustering algorithm for identifying interesting groups of genes from cell cycle expression data
Chang Sik Kim
,
Cheol Soo Bae
,
Hong Joon Tcha
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.50 MB
Vos balises:
english, 2008
500
Gene function prediction using labeled and unlabeled data
Xing-Ming Zhao
,
Yong Wang
,
Luonan Chen
,
Kazuyuki Aihara
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 371 KB
Vos balises:
english, 2008
501
Signature Evaluation Tool (SET): a Java-based tool to evaluate and visualize the sample discrimination abilities of gene expression signatures
Chih-Hung Jen
,
Tsun-Po Yang
,
Chien-Yi Tung
,
Shu-Han Su
,
Chi-Hung Lin
,
Ming-Ta Hsu
,
Hsei-Wei Wang
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 591 KB
Vos balises:
english, 2008
502
Identification of biomarkers for genotypingAspergilliusing non-linear methods for clustering and classification
Irene Kouskoumvekaki
,
Zhiyong Yang
,
Svava Ó Jónsdóttir
,
Lisbeth Olsson
,
Gianni Panagiotou
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 713 KB
Vos balises:
english, 2008
503
Can molecular dynamics simulations help in discriminating correct from erroneous protein 3D models?
Jean-François Taly
,
Antoine Marin
,
Jean-François Gibrat
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 3.14 MB
Vos balises:
english, 2008
504
Inferring gene expression dynamics via functional regression analysis
Hans-Georg Müller
,
Jeng-Min Chiou
,
Xiaoyan Leng
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 644 KB
Vos balises:
english, 2008
505
Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities
Usman Roshan
,
Satish Chikkagoudar
,
Dennis R Livesay
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 341 KB
Vos balises:
english, 2008
506
VirulentPred: a SVM based prediction method for virulent proteins in bacterial pathogens
Aarti Garg
,
Dinesh Gupta
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 727 KB
Vos balises:
english, 2008
507
Meta-analysis of breast cancer microarray studies in conjunction with conservedcis-elements suggest patterns for coordinate regulation
David D Smith
,
Pål Sætrom
,
Ola Snøve
,
Cathryn Lundberg
,
Guillermo E Rivas
,
Carlotta Glackin
,
Garrett P Larson
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 491 KB
Vos balises:
english, 2008
508
CASCADE: a novel quasi all paths-based network analysis algorithm for clustering biological interactions
Woochang Hwang
,
Young-Rae Cho
,
Aidong Zhang
,
Murali Ramanathan
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 368 KB
Vos balises:
english, 2008
509
E-CAI: a novel server to estimate an expected value of Codon Adaptation Index (eCAI)
Pere Puigbò
,
Ignacio G Bravo
,
Santiago Garcia-Vallvé
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 271 KB
Vos balises:
english, 2008
510
Validation of protein models by a neural network approach
Paolo Mereghetti
,
Maria Luisa Ganadu
,
Elena Papaleo
,
Piercarlo Fantucci
,
Luca De Gioia
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 327 KB
Vos balises:
english, 2008
511
VennMaster: Area-proportional Euler diagrams for functional GO analysis of microarrays
Hans A Kestler
,
André Müller
,
Johann M Kraus
,
Malte Buchholz
,
Thomas M Gress
,
Hongfang Liu
,
David W Kane
,
Barry R Zeeberg
,
John N Weinstein
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.29 MB
Vos balises:
english, 2008
512
The strength of co-authorship in gene name disambiguation
Richárd Farkas
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 269 KB
Vos balises:
english, 2008
513
A PATO-compliant zebrafish screening database (MODB): management of morpholino knockdown screen information
Michelle N Knowlton
,
Tongbin Li
,
Yongliang Ren
,
Brent R Bill
,
Lynda BM Ellis
,
Stephen C Ekker
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 2.09 MB
Vos balises:
english, 2008
514
GraphCrunch: A tool for large network analyses
Tijana Milenković
,
Jason Lai
,
Nataša Pržulj
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 615 KB
Vos balises:
english, 2008
515
PEPOP: Computational design of immunogenic peptides
Violaine Moreau
,
Cécile Fleury
,
Dominique Piquer
,
Christophe Nguyen
,
Nicolas Novali
,
Sylvie Villard
,
Daniel Laune
,
Claude Granier
,
Franck Molina
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 2.78 MB
Vos balises:
english, 2008
516
Subfamily specific conservation profiles for proteins based on n-gram patterns
John K Vries
,
Xiong Liu
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 487 KB
Vos balises:
english, 2008
517
SIGffRid: A tool to search for sigma factor binding sites in bacterial genomes using comparative approach and biologically driven statistics
Fabrice Touzain
,
Sophie Schbath
,
Isabelle Debled-Rennesson
,
Bertrand Aigle
,
Gregory Kucherov
,
Pierre Leblond
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 414 KB
Vos balises:
english, 2008
518
Towards an automatic classification of protein structural domains based on structural similarity
Vichetra Sam
,
Chin-Hsien Tai
,
Jean Garnier
,
Jean-Francois Gibrat
,
Byungkook Lee
,
Peter J Munson
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.36 MB
Vos balises:
english, 2008
519
Rank-based edge reconstruction for scale-free genetic regulatory networks
Guanrao Chen
,
Peter Larsen
,
Eyad Almasri
,
Yang Dai
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 563 KB
Vos balises:
english, 2008
520
Response projected clustering for direct association with physiological and clinical response data
Sung-Gon Yi
,
Taesung Park
,
Jae K Lee
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 874 KB
Vos balises:
english, 2008
521
AWclust: point-and-click software for non-parametric population structure analysis
Xiaoyi Gao
,
Joshua D Starmer
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 449 KB
Vos balises:
english, 2008
522
OpenDMAP: An open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression
Lawrence Hunter
,
Zhiyong Lu
,
James Firby
,
William A Baumgartner
,
Helen L Johnson
,
Philip V Ogren
,
K Bretonnel Cohen
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 543 KB
Vos balises:
english, 2008
523
Ori-Finder: A web-based system for findingoriCs in unannotated bacterial genomes
Feng Gao
,
Chun-Ting Zhang
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 779 KB
Vos balises:
english, 2008
524
A novel method for high accuracy sumoylation site prediction from protein sequences
Jialin Xu
,
Yun He
,
Boqin Qiang
,
Jiangang Yuan
,
Xiaozhong Peng
,
Xian-Ming Pan
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 616 KB
Vos balises:
english, 2008
525
ProLoc-GO: Utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization
Wen-Lin Huang
,
Chun-Wei Tung
,
Shih-Wen Ho
,
Shiow-Fen Hwang
,
Shinn-Ying Ho
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 641 KB
Vos balises:
english, 2008
526
Visualizing and clustering high throughput sub-cellular localization imaging
Nicholas A Hamilton
,
Rohan D Teasdale
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 844 KB
Vos balises:
english, 2008
527
A comparison of common programming languages used in bioinformatics
Mathieu Fourment
,
Michael R Gillings
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 273 KB
Vos balises:
english, 2008
528
The VirusBanker database uses a Java program to allow flexible searching throughBunyaviridaesequences
Mathieu Fourment
,
Mark J Gibbs
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 696 KB
Vos balises:
english, 2008
529
OSIRISv1.2: A named entity recognition system for sequence variants of genes in biomedical literature
Laura I Furlong
,
Holger Dach
,
Martin Hofmann-Apitius
,
Ferran Sanz
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 961 KB
Vos balises:
english, 2008
530
Statistical issues in the analysis of Illumina data
Mark J Dunning
,
Nuno L Barbosa-Morais
,
Andy G Lynch
,
Simon Tavaré
,
Matthew E Ritchie
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.78 MB
Vos balises:
english, 2008
531
The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology
Frédéric Chalmel
,
Michael Primig
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.07 MB
Vos balises:
english, 2008
532
Building pathway clusters from Random Forests classification using class votes
Herbert Pang
,
Hongyu Zhao
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 775 KB
Vos balises:
english, 2008
533
Comparison of normalisation methods for surface-enhanced laser desorption and ionisation (SELDI) time-of-flight (TOF) mass spectrometry data
Wouter Meuleman
,
Judith YMN Engwegen
,
Marie-Christine W Gast
,
Jos H Beijnen
,
Marcel JT Reinders
,
Lodewyk FA Wessels
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 378 KB
Vos balises:
english, 2008
534
An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance
Ana C Casimiro
,
Susana Vinga
,
Ana T Freitas
,
Arlindo L Oliveira
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 510 KB
Vos balises:
english, 2008
535
SCOWLP classification: Structural comparison and analysis of protein binding regions
Joan Teyra
,
Maciej Paszkowski-Rogacz
,
Gerd Anders
,
M Teresa Pisabarro
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 945 KB
Vos balises:
english, 2008
536
Modularization of biochemical networks based on classification of Petri net t-invariants
Eva Grafahrend-Belau
,
Falk Schreiber
,
Monika Heiner
,
Andrea Sackmann
,
Björn H Junker
,
Stefanie Grunwald
,
Astrid Speer
,
Katja Winder
,
Ina Koch
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 859 KB
Vos balises:
english, 2008
537
Evolutionary approaches for the reverse-engineering of gene regulatory networks: A study on a biologically realistic dataset
Cédric Auliac
,
Vincent Frouin
,
Xavier Gidrol
,
Florence d'Alché-Buc
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.20 MB
Vos balises:
english, 2008
538
Microarray data mining using landmark gene-guided clustering
Pankaj Chopra
,
Jaewoo Kang
,
Jiong Yang
,
HyungJun Cho
,
Heenam Stanley Kim
,
Min-Goo Lee
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.03 MB
Vos balises:
english, 2008
539
Supervised Lowess normalization of comparative genome hybridization data – application to lactococcal strain comparisons
Sacha AFT van Hijum
,
Richard JS Baerends
,
Aldert L Zomer
,
Harma A Karsens
,
Victoria Martin-Requena
,
Oswaldo Trelles
,
Jan Kok
,
Oscar P Kuipers
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 753 KB
Vos balises:
english, 2008
540
Using neural networks and evolutionary information in decoy discrimination for protein tertiary structure prediction
Ching-Wai Tan
,
David T Jones
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 478 KB
Vos balises:
english, 2008
541
Simultaneous fitting of real-time PCR data with efficiency of amplification modeled as Gaussian function of target fluorescence
Anke Batsch
,
Andrea Noetel
,
Christian Fork
,
Anita Urban
,
Daliborka Lazic
,
Tina Lucas
,
Julia Pietsch
,
Andreas Lazar
,
Edgar Schömig
,
Dirk Gründemann
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 361 KB
Vos balises:
english, 2008
542
High-throughput bioinformatics with the Cyrille2 pipeline system
Mark WEJ Fiers
,
Ate van der Burgt
,
Erwin Datema
,
Joost CW de Groot
,
Roeland CHJ van Ham
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 572 KB
Vos balises:
english, 2008
543
Using a logical model to predict the growth of yeast
KE Whelan
,
RD King
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 574 KB
Vos balises:
english, 2008
544
Statistical methodology for the analysis of dye-switch microarray experiments
Tristan Mary-Huard
,
Julie Aubert
,
Nadera Mansouri-Attia
,
Olivier Sandra
,
Jean-Jacques Daudin
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 402 KB
Vos balises:
english, 2008
545
A perspective for biomedical data integration: Design of databases for flow cytometry
John Drakos
,
Marina Karakantza
,
Nicholas C Zoumbos
,
John Lakoumentas
,
George C Nikiforidis
,
George C Sakellaropoulos
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 982 KB
Vos balises:
english, 2008
546
Protein structure search and local structure characterization
Shih-Yen Ku
,
Yuh-Jyh Hu
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.40 MB
Vos balises:
english, 2008
547
Automatic detection of exonic splicing enhancers (ESEs) using SVMs
Britta Mersch
,
Alexander Gepperth
,
Sándor Suhai
,
Agnes Hotz-Wagenblatt
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 743 KB
Vos balises:
english, 2008
548
Clustering cancer gene expression data: a comparative study
Marcilio CP de Souto
,
Ivan G Costa
,
Daniel SA de Araujo
,
Teresa B Ludermir
,
Alexander Schliep
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.08 MB
Vos balises:
english, 2008
549
Clustering exact matches of pairwise sequence alignments by weighted linear regression
Alvaro J González
,
Li Liao
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 625 KB
Vos balises:
english, 2008
550
Principal components analysis based methodology to identify differentially expressed genes in time-course microarray data
Sudhakar Jonnalagadda
,
Rajagopalan Srinivasan
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 2.20 MB
Vos balises:
english, 2008
551
Inferring modules of functionally interacting proteins using the Bond Energy Algorithm
Ryosuke LA Watanabe
,
Enrique Morett
,
Edgar E Vallejo
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 418 KB
Vos balises:
english, 2008
552
Assessing probe-specific dye and slide biases in two-color microarray data
Ruixiao Lu
,
Geun-Cheol Lee
,
Michael Shultz
,
Chris Dardick
,
Kihong Jung
,
Jirapa Phetsom
,
Yi Jia
,
Robert H Rice
,
Zelanna Goldberg
,
Patrick S Schnable
,
Pamela Ronald
,
David M Rocke
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.08 MB
Vos balises:
english, 2008
553
Combining classifiers for improved classification of proteins from sequence or structure
Iain Melvin
,
Jason Weston
,
Christina S Leslie
,
William S Noble
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 289 KB
Vos balises:
english, 2008
554
Prediction of TF target sites based on atomistic models of protein-DNA complexes
Vladimir Espinosa Angarica
,
Abel González Pérez
,
Ana T Vasconcelos
,
Julio Collado-Vides
,
Bruno Contreras-Moreira
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 703 KB
Vos balises:
english, 2008
555
Extension of the COG and arCOG databases by amino acid and nucleotide sequences
Florian Meereis
,
Michael Kaufmann
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 256 KB
Vos balises:
english, 2008
556
ProfileGrids as a new visual representation of large multiple sequence alignments: a case study of the RecA protein family
Alberto I Roca
,
Albert E Almada
,
Aaron C Abajian
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.28 MB
Vos balises:
english, 2008
557
WGCNA: an R package for weighted correlation network analysis
Peter Langfelder
,
Steve Horvath
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.73 MB
Vos balises:
english, 2008
558
Evaluation of two methods for computational HLA haplotypes inference using a real dataset
Bruno F Bettencourt
,
Margarida R Santos
,
Raquel N Fialho
,
Ana R Couto
,
Maria J Peixoto
,
João P Pinheiro
,
Hélder Spínola
,
Marian G Mora
,
Cristina Santos
,
António Brehm
,
Jácome Bruges-Armas
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 307 KB
Vos balises:
english, 2008
559
CoCoNUT: an efficient system for the comparison and analysis of genomes
Abouelhoda, Mohamed I
,
Kurtz, Stefan
,
Ohlebusch, Enno
Journal:
BMC Bioinformatics
Année:
2008
Langue:
english
Fichier:
PDF, 1.12 MB
Vos balises:
english, 2008
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