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Volume 10

Genomics Data

Volume 10

1

Comparative analysis of transcriptomes in aerial stems and roots of Ephedra sinica based on high-throughput mRNA sequencing

Okada, Taketo, Takahashi, Hironobu, Suzuki, Yutaka, Sugano, Sumio, Noji, Masaaki, Kenmoku, Hiromichi, Toyota, Masao, Kanaya, Shigehiko, Kawahara, Nobuo, Asakawa, Yoshinori, Sekita, Setsuko

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 571 KB

english, 2016

2

Draft genome sequence of Mameliella alba strain UMTAT08 isolated from clonal culture of toxic dinoflagellate Alexandrium tamiyavanichii

Danish-Daniel, Muhd, Han Ming, Gan, Noor, Mohd Ezhar Mohd, Yeong, Yik Sung, Usup, Gires

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 593 KB

english, 2016

3

Fine resolution mapping of double-strand break sites for human ribosomal DNA units

Pope, Bernard J., Mahmood, Khalid, Jung, Chol-hee, Park, Daniel J.

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 434 KB

english, 2016

4

Behavioral and omics analyses study on potential involvement of dipeptide balenine through supplementation in diet of senescence-accelerated mouse prone 8

Wada, Nobuhiro, Yamanaka, Satoru, Shibato, Junko, Rakwal, Randeep, Hirako, Satoshi, Iizuka, Yuzuru, Kim, Hyounju, Matsumoto, Akiyo, Kimura, Ai, Takenoya, Fumiko, Yasunaga, Genta, Shioda, Seiji

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 1.74 MB

english, 2016

5

Transcriptome profiling of Curcuma longa L. cv. Suvarna

Sahoo, Ambika, Kar, Basudeba, Sahoo, Suprava, Ray, Asit, Nayak, Sanghamitra

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 210 KB

english, 2016

6

Functional high-resolution time-course expression analysis of human embryonic stem cells undergoing cardiac induction

Piccini, Ilaria, Araúzo-Bravo, Marcos, Seebohm, Guiscard, Greber, Boris

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 1.39 MB

english, 2016

7

Genome wide binding (ChIP-Seq) of murine Bapx1 and Sox9 proteins in vivo and in vitro

Chatterjee, Sumantra, Kraus, Petra, Sivakamasundari, V., Yap, Sook Peng, Kumar, Vibhor, Prabhakar, Shyam, Lufkin, Thomas

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 500 KB

english, 2016

8

De novo transcriptome assembly of mangosteen (Garcinia mangostana L.) fruit

Matra, Deden Derajat, Kozaki, Toshinori, Ishii, Kazuo, Poerwanto, Roedhy, Inoue, Eiichi

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 237 KB

english, 2016

9

Whole-genome sequence of Dermabacter vaginalis AD1-86T, isolated from vaginal fluid of Korean woman

Lim, Sooyeon, Chang, Dong-Ho, Kim, Byoung-Chan

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 517 KB

english, 2016

10

Draft genome sequence of the extremely halophilic Halorubrum sp. SAH-A6 isolated from rock salts of the Danakil depression, Ethiopia

Gibtan, Ashagrie, Woo, Mingyeong, Oh, Dokyung, Park, Kyounghee, Lee, Han-Seung, Sohn, Jae Hak, Lee, Dong-Woo, Shin, Jung-Kue, Lee, Sang-Jae

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 498 KB

english, 2016

11

Draft genome sequence of Microbacterium oleivorans strain Wellendorf implicates heterotrophic versatility and bioremediation potential

Avramov, Anton P., Couger, M.B., Hartley, Emily L., Land, Craig, Wellendorf, Rachel, Hanafy, Radwa A., Budd, Connie, French, Donald P., Hoff, Wouter D., Youssef, Noha

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 616 KB

english, 2016

12

Brain transcriptomes of honey bees (Apis mellifera) experimentally infected by two pathogens: Black queen cell virus and Nosema ceranae

Doublet, Vincent, Paxton, Robert J., McDonnell, Cynthia M., Dubois, Emeric, Nidelet, Sabine, Moritz, Robin F.A., Alaux, Cédric, Le Conte, Yves

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 459 KB

english, 2016

13

The genome of the insecticidal Chromobacterium subtsugae PRAA4-1 and its comparison with that of Chromobacterium violaceum ATCC 12472

Blackburn, Michael B., Sparks, Michael E., Gundersen-Rindal, Dawn E.

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 357 KB

english, 2016

14

Nonsyndromic cleft lip with or without cleft palate and cancer: Evaluation of a possible common genetic background through the analysis of GWAS data

Dunkhase, Eva, Ludwig, Kerstin U., Knapp, Michael, Skibola, Christine F., Figueiredo, Jane C., Hosking, Fay Julie, Ellinghaus, Eva, Landi, Maria Teresa, Ma, Hongxia, Nakagawa, Hidewaki, Kim, Jong-Won,

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 352 KB

english, 2016

15

Draft genome sequence and detailed analysis of Pantoea eucrina strain Russ and implication for opportunistic pathogenesis

Moghadam, Farzaneh, Couger, MB, Russ, Breeanna, Ramsey, Randi, Hanafy, Radwa A., Budd, Connie, French, Donald P., Hoff, Wouter D., Youssef, Noha

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 407 KB

english, 2016

16

Multiple sclerosis is accompanied by lack of KIR2DS1 gene: A meta-analysis

Shahsavar, Farhad, Mapar, Shaghayegh, Ahmadi, Seyyed Amir Yasin

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 663 KB

english, 2016

17

Bovine annulus fibrosus cell lines isolated from intervertebral discs

Kraus, Petra, Lufkin, Thomas

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 732 KB

english, 2016

18

Genome sequences of six Phytophthora species threatening forest ecosystems

Feau, Nicolas, Taylor, Greg, Dale, Angela L., Dhillon, Braham, Bilodeau, Guillaume J., Birol, Inanç, Jones, Steven J.M., Hamelin, Richard C.

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 371 KB

english, 2016

19

Whole-genome sequence of Bacillus solimangrovi GH 2-4T, isolated from mangrove soil

Lim, Sooyeon, Chang, Dong-Ho, Kim, Byoung-Chan

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 564 KB

english, 2016

20

Draft genome sequence of Mycobacterium tuberculosis strain B9741 of Beijing B0/W lineage from HIV positive patient from Siberia

Shur, K.V., Zaychikova, M.V., Mikheecheva, N.E., Klimina, K.M., Bekker, O.B., Zhdanova, S.N., Ogarkov, O.B., Danilenko, V.N.

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 165 KB

english, 2016

21

Transcriptional profiling of the effect of lipopolysaccharide (LPS) pretreatment in blood from probiotics-treated dairy cows

Adjei-Fremah, Sarah, Ekwemalor, Kingsley, Asiamah, Emmanuel, Ismail, Hamid, Worku, Mulumebet

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 1.25 MB

english, 2016

22

Leading edge analysis of transcriptomic changes during pseudorabies virus infection

Fleming, Damarius S., Miller, Laura C.

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 144 KB

english, 2016

23

Draft genome sequence of Staphylococcus hominis strain Hudgins isolated from human skin implicates metabolic versatility and several virulence determinants

Calkins, Shelby, Couger, M.B., Jackson, Colin, Zandler, Jordan, Hudgins, Garett C., Hanafy, Radwa A., Budd, Connie, French, Donald P., Hoff, Wouter D., Youssef, Noha

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 538 KB

english, 2016

24

Colorectal cancer and the KIR genes in the human genome: A meta-analysis

Ghanadi, Koroush, Shayanrad, Bahareh, Ahmadi, Seyyed Amir Yasin, Shahsavar, Farhad, Eliasy, Hossein

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 1.82 MB

english, 2016

25

Analysis of distribution of DNA methylation in kidney-renal-clear-cell-carcinoma specific genes using entropy

Ramakrishnan, Nithya, Bose, R.

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 1.00 MB

english, 2016

26

Metagenome sequencing of the microbial community of two Brazilian anthropogenic Amazon dark earth sites, Brazil

Lemos, Leandro Nascimento, de Souza, Rosineide Cardoso, de Souza Cannavan, Fabiana, Patricio, André, Pylro, Victor Satler, Hanada, Rogério Eiji, Mui, Tsai Siu

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 216 KB

english, 2016

27

Gene expression in the mouse brain following early pregnancy exposure to ethanol

Zhang, Christine R., Chong, Suyinn

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 163 KB

english, 2016

28

Functional alterations due to amino acid changes and evolutionary comparative analysis of ARPKD and ADPKD genes

Edrees, Burhan M., Athar, Mohammad, Abduljaleel, Zainularifeen, Al-Allaf, Faisal A, Taher, Mohiuddin M., Khan, Wajahatullah, Bouazzaoui, Abdellatif, Al-Harbi, Naffaa, Safar, Ramzia, Al-Edressi, Howaid

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 2.97 MB

english, 2016

29

Metagenomic investigation of the microbial diversity in a chrysotile asbestos mine pit pond, Lowell, Vermont, USA

Driscoll, Heather E., Vincent, James J., English, Erika L., Dolci, Elizabeth D.

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 1.62 MB

english, 2016

30

Identifying protective host gene expression signatures within the spleen during West Nile virus infection in the collaborative cross model

Green, Richard, Wilkins, Courtney, Thomas, Sunil, Sekine, Aimee, Ireton, Renee C., Ferris, Martin T., Hendrick, Duncan M., Voss, Kathleen, de Villena, Fernando Pardo-Manuel, Baric, Ralph, Heise, Mark,

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 836 KB

english, 2016

31

Transcript profiling in the liver of early-lactating dairy cows fed conjugated linoleic acid

Ringseis, Robert, Windisch, Wilhelm, Eder, Klaus

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 177 KB

english, 2016

32

Transcriptional profiles of WNV neurovirulence in a genetically diverse Collaborative Cross population

Green, Richard, Wilkins, Courtney, Thomas, Sunil, Sekine, Aimee, Ireton, Renee C., Ferris, Martin T., Hendrick, Duncan M., Voss, Kathleen, Pardo-Manuel de Villena, Fernando, Baric, Ralph S., Heise, Ma

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 860 KB

english, 2016

33

Evidence of triple mutant Pf dhps IS GNG A haplotype in Plasmodium falciparum isolates from North-east India: An analysis of sulfadoxine resistant haplotype selection

Das, Manuj K., Chetry, Sumi, Kalita, Mohan C., Dutta, Prafulla

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 511 KB

english, 2016

34

Draft whole-genome sequence of the Diaporthe helianthi 7/96 strain, causal agent of sunflower stem canker

Baroncelli, Riccardo, Scala, Felice, Vergara, Mariarosaira, Thon, Michael R., Ruocco, Michelina

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 172 KB

english, 2016

35

Application of target capture sequencing of exons and conserved non-coding sequences to 20 inbred rat strains

Yoshihara, Minako, Sato, Tetsuya, Saito, Daisuke, Ohara, Osamu, Kuramoto, Takashi, Suyama, Mikita

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 184 KB

english, 2016

36

Complete genome sequence of the biofilm-forming Curtobacterium sp. strain BH-2-1-1, isolated from lettuce ( Lactuca sativa ) originating from a conventional field in Norway

Dees, Merete Wiken, Brurberg, May Bente, Lysøe, Erik

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 389 KB

english, 2016

37

Evaluation of de novo assembly technique in the South African abalone Haliotis midae transcriptome: A comparison from Illumina and 454 systems

Picone, Barbara, Rhode, Clint, Roodt-Wilding, Rouvay

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 159 KB

english, 2016

38

De novo transcriptome assembly of Schisandra chinensis Turcz. (Baill.)

qing-tian, Zhang, shu-tian, Fan, yi-ming, Yang, pei-lei, Xu, jun, Ai

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 162 KB

english, 2016

39

The complete mitochondrial genome of the acid-tolerant fungus Penicillium ShG4C

Mardanov, Andrey V., Glukhova, Lubov B, Gruzdev, Eugeny V., Beletsky, Alexey V., Karnachuk, Olga V., Ravin, Nikolai V.

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 243 KB

english, 2016