Volume 44; Issue 5

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Biochemistry
Volume 44; Issue 5

Biochemistry

Volume 44; Issue 5

1

Mutagenic Properties of 5-Halogenuracils: Correlated Quantum Chemical ab Initio Study†

Hanus, Michal, Kabeláč, Martin, Nachtigallová, Dana, Hobza, Pavel

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 87 KB

english, 2005

2

Site-Specific Nitration and Oxidative Dityrosine Bridging of the τ Protein by Peroxynitrite: Implications for Alzheimer's Disease †

Reynolds, Matthew R., Berry, Robert W., Binder, Lester I.

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 3.20 MB

english, 2005

3

Temperature-Dependent Variations and Intraspecies Diversity of the Structure of the Lipopolysaccharide of Yersinia pestis †,‡

Knirel, Yuriy A., Lindner, Buko, Vinogradov, Evgeny V., Kocharova, Nina A., Senchenkova, Sof'ya N., Shaikhutdinova, Rima Z., Dentovskaya, Svetlana V., Fursova, Nadezhda K., Bakhteeva, Irina V., Titare

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 595 KB

english, 2005

4

A Spider Toxin That Induces a Typical Effect of Scorpion α-Toxins but Competes with β-Toxins on Binding to Insect Sodium Channels †

Corzo, Gerardo, Escoubas, Pierre, Villegas, Elba, Karbat, Izhar, Gordon, Dalia, Gurevitz, Michael, Nakajima, Terumi, Gilles, Nicolas

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 336 KB

english, 2005

5

Conformational Determinants of Tandem GU Mismatches in RNA: Insights from Molecular Dynamics Simulations and Quantum Mechanical Calculations †

Pan, Yongping, Priyakumar, U. Deva, MacKerell, Alexander D.

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 224 KB

english, 2005

6

Mutagenesis Evidence that the Partial Reactions of Firefly Bioluminescence Are Catalyzed by Different Conformations of the Luciferase C-Terminal Domain †

Branchini, Bruce R., Southworth, Tara L., Murtiashaw, Martha H., Wilkinson, Sara R., Khattak, Neelum F., Rosenberg, Justin C., Zimmer, Marc

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 334 KB

english, 2005

7

Activation, Inhibition, and Destabilization of Thermomyces lanuginosus Lipase by Detergents †

Mogensen, Jesper E., Sehgal, Pankaj, Otzen, Daniel E.

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 153 KB

english, 2005

8

The GxxxG-Containing Transmembrane Domain of the CCK4 Oncogene Does Not Encode Preferential Self-Interactions †

Kobus, Felix J., Fleming, Karen G.

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 160 KB

english, 2005

9

Characterization of Chemical Exchange between Soluble and Aggregated States of β-Amyloid by Solution-State NMR upon Variation of Salt Conditions †

Narayanan, Saravanakumar, Reif, Bernd

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 388 KB

english, 2005

10

Characterization of Recombinant Long-Chain Rat Acyl-CoA Synthetase Isoforms 3 and 6: Identification of a Novel Variant of Isoform 6

Van Horn, Cynthia G., Caviglia, Jorge M., Li, Lei O., Wang, Shuli, Granger, Deborah A., Coleman, Rosalind A.

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 133 KB

english, 2005

11

Photophysics of Tryptophan Fluorescence: Link with the Catalytic Strategy of the Citrate Synthase from Thermoplasma acidophilum †

Kurz, Linda C., Fite, Brett, Jean, John, Park, Jung, Erpelding, Tim, Callis, Patrik

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 503 KB

english, 2005

12

The Contribution of C α −H···O Hydrogen Bonds to Membrane Protein Stability Depends on the Position of the Amide †

Mottamal, Madhusoodanan, Lazaridis, Themis

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 124 KB

english, 2005

13

Probing the Geometric and Electronic Structures of the Low-Temperature Azide Adduct and the Product-Inhibited Form of Oxidized Manganese Superoxide Dismutase †

Jackson, Timothy A., Karapetian, Anush, Miller, Anne-Frances, Brunold, Thomas C.

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 430 KB

english, 2005

14

pH Dependence of the Flash-Induced S-State Transitions in the Oxygen-Evolving Center of Photosystem II from Thermosynechoccocus elongatus as Revealed by Fourier Transform Infrared Spectroscopy †

Suzuki, Hiroyuki, Sugiura, Miwa, Noguchi, Takumi

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 279 KB

english, 2005

15

Augmenter of Liver Regeneration: A Flavin-Dependent Sulfhydryl Oxidase with Cytochrome c Reductase Activity †

Farrell, Scott R., Thorpe, Colin

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 362 KB

english, 2005

16

l -Cysteine Desulfidase: An [4Fe-4S] Enzyme Isolated from Methanocaldococcus jannaschii That Catalyzes the Breakdown of l -Cysteine into Pyruvate, Ammonia, and Sulfide †

Tchong, Shih-I, Xu, Huimin, White, Robert H.

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 617 KB

english, 2005

17

Contributions of Cysteine Residues in Zn2 to Zinc Fingers and Thiol-Disulfide Oxidoreductase Activities of Chaperone DnaJ †

Shi, Yuan-yuan, Tang, Wei, Hao, Shu-feng, Wang, Chih-Chen

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 259 KB

english, 2005

18

Active Site Rearrangement of the 2-Hydrazinopyridine Adduct in Escherichia coli Amine Oxidase to an Azo Copper(II) Chelate Form: A Key Role for Tyrosine 369 in Controlling the Mobility of the TPQ−2HP Adduct †

Mure, Minae, Kurtis, Christian R., Brown, Doreen E., Rogers, Melanie S., Tambyrajah, Winston S., Saysell, Colin, Wilmot, Carrie M., Phillips, Simon E. V., Knowles, Peter F., Dooley, David M., McPherso

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 468 KB

english, 2005

19

In the Quest for Stable Rescuing Mutants of p53: Computational Mutagenesis of Flexible Loop L1 †

Pan, Yongping, Ma, Buyong, Venkataraghavan, R. Babu, Levine, Arnold J., Nussinov, Ruth

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 894 KB

english, 2005

20

Reversible Dimerization of Acid-Denatured ACBP Controlled by Helix A4 †

Fieber, Wolfgang, Kragelund, Birthe B., Meldal, Morten, Poulsen, Flemming M.

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 302 KB

english, 2005

21

Adaptation Mechanism of the Aspartate Receptor: Electrostatics of the Adaptation Subdomain Play a Key Role in Modulating Kinase Activity †

Starrett, Diane J., Falke, Joseph J.

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 552 KB

english, 2005

22

Impact of N-Terminal Domains for Corticotropin-Releasing Factor (CRF) Receptor−Ligand Interactions †

Klose, Jana, Fechner, Klaus, Beyermann, Michael, Krause, Eberhard, Wendt, Norbert, Bienert, Michael, Rudolph, Rainer, Rothemund, Sven

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 258 KB

english, 2005

23

Detection of Intermediates from the Polymerization Reaction Catalyzed by a D302A Mutant of Class III Polyhydroxyalkanoate (PHA) Synthase †

Tian, Jiamin, Sinskey, Anthony J., Stubbe, JoAnne

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 246 KB

english, 2005

24

The 1.9 Å Crystal Structure of Alanine Racemase from Mycobacterium tuberculosis Contains a Conserved Entryway into the Active Site †,‡

LeMagueres, Pierre, Im, Hookang, Ebalunode, Jerry, Strych, Ulrich, Benedik, Michael J., Briggs, James M., Kohn, Harold, Krause, Kurt L.

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 4.52 MB

english, 2005

25

No Evidence from FTIR Difference Spectroscopy That Aspartate-170 of the D1 Polypeptide Ligates a Manganese Ion That Undergoes Oxidation during the S 0 to S 1 , S 1 to S 2 , or S 2 to S 3 Transitions in Photosystem II †

Debus, Richard J., Strickler, Melodie A., Walker, Lee M., Hillier, Warwick

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 207 KB

english, 2005

26

Folding of the SARS Coronavirus Spike Glycoprotein Immunological Fragment (SARS_S1B): Thermodynamic and Kinetic Investigation Correlating with Three-Dimensional Structural Modeling †

Yu, Changying, Gui, Chunshan, Luo, Haibin, Chen, Lili, Zhang, Liang, Yu, Hao, Yang, Sheng, Jiang, Weihong, Shen, Jianhua, Shen, Xu, Jiang, Hualiang

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 606 KB

english, 2005

27

Role of the Interactions between the Active Site Base and the Substrate Schiff Base in Amine Oxidase Catalysis. Evidence from Structural and Spectroscopic Studies of the 2-Hydrazinopyridine Adduct of Escherichia coli Amine Oxidase †

Mure, Minae, Brown, Doreen E., Saysell, Colin, Rogers, Melanie S., Wilmot, Carrie M., Kurtis, Christian R., McPherson, Michael J., Phillips, Simon E. V., Knowles, Peter F., Dooley, David M.

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 380 KB

english, 2005

28

Ionic-Strength Dependence of the Conformational Change in the Unphosphorylated Sodium Pump †

Lin, Shwu-Hwa, Faller, Larry D.

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 560 KB

english, 2005

29

Probing the Communication between the Regulatory and Catalytic Domains of a Protein Tyrosine Kinase, Csk †

Lin, Xiaofeng, Ayrapetov, Marina K., Lee, Sungsoo, Parang, Keykavous, Sun, Gongqin

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 367 KB

english, 2005

30

Characterization of the Δμ H+ -Sensitive Ubisemiquinone Species (SQ Nf ) and the Interaction with Cluster N2: New Insight into the Energy-Coupled Electron Transfer in Complex I †

Yano, Takahiro, Dunham, William R., Ohnishi, Tomoko

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 186 KB

english, 2005

31

Electrostatic Interactions Involving Lysine Make Major Contributions to Collagen Triple-Helix Stability †

Persikov, Anton V., Ramshaw, John A. M., Kirkpatrick, Alan, Brodsky, Barbara

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 216 KB

english, 2005

32

Dissecting the Effects of DNA Polymerase and Ribonuclease H Inhibitor Combinations on HIV-1 Reverse-Transcriptase Activities

Shaw-Reid, Cathryn A., Feuston, Bradley, Munshi, Vandna, Getty, Krista, Krueger, Julie, Hazuda, Daria J., Parniak, Michael A., Miller, Michael D., Lewis, Dale

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 769 KB

english, 2005

33

Accessibility of Cysteines in the Native Bovine Rod cGMP-Gated Channel

Bauer, Paul J., Krause, Eberhard

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 378 KB

english, 2005

34

Crystal Structure Analysis of Recombinant Rat Kidney Long Chain Hydroxy Acid Oxidase †,‡

Cunane, Louise M., Barton, John D., Chen, Zhi-wei, Lê, K. H. Diêp, Amar, David, Lederer, Florence, Mathews, F. Scott

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 926 KB

english, 2005

35

EPR Signals Assigned to Fe/S Cluster N1c of the Escherichia coli NADH:Ubiquinone Oxidoreductase (Complex I) Derive from Cluster N1a †

Uhlmann, Mareike, Friedrich, Thorsten

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 162 KB

english, 2005

36

Monitoring the Timing of ATP Hydrolysis with Activation of Peptide Cleavage in Escherichia coli Lon by Transient Kinetics †

Vineyard, Diana, Patterson-Ward, Jessica, Berdis, Anthony J., Lee, Irene

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 189 KB

english, 2005

37

A Novel Enzyme Complex of Orotate Phosphoribosyltransferase and Orotidine 5‘-Monophosphate Decarboxylase in Human Malaria Parasite Plasmodium falciparum : Physical Association, Kinetics, and Inhibition Characterization †,‡

Krungkrai, Sudaratana R., DelFraino, Brian J., Smiley, Jeffrey A., Prapunwattana, Phisit, Mitamura, Toshihide, Horii, Toshihiro, Krungkrai, Jerapan

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 260 KB

english, 2005