Volume 5; Issue 9

PLoS Computational Biology

Volume 5; Issue 9

1

Network-State Modulation of Power-Law Frequency-Scaling in Visual Cortical Neurons

El Boustani, Sami, Marre, Olivier, Béhuret, Sébastien, Baudot, Pierre, Yger, Pierre, Bal, Thierry, Destexhe, Alain, Frégnac, Yves, Friston, Karl J.

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 857 KB

english, 2009

2

Human miRNA Precursors with Box H/ACA snoRNA Features

Scott, Michelle S., Avolio, Fabio, Ono, Motoharu, Lamond, Angus I., Barton, Geoffrey J., Unger, Ron

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 955 KB

english, 2009

3

Transcriptional Profiling of the Dose Response: A More Powerful Approach for Characterizing Drug Activities

Ji, Rui-Ru, de Silva, Heshani, Jin, Yisheng, Bruccoleri, Robert E., Cao, Jian, He, Aiqing, Huang, Wenjun, Kayne, Paul S., Neuhaus, Isaac M., Ott, Karl-Heinz, Penhallow, Becky, Cockett, Mark I., Neubau

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 729 KB

english, 2009

4

Predicting Positive p53 Cancer Rescue Regions Using Most Informative Positive (MIP) Active Learning

Danziger, Samuel A., Baronio, Roberta, Ho, Lydia, Hall, Linda, Salmon, Kirsty, Hatfield, G. Wesley, Kaiser, Peter, Lathrop, Richard H., Briggs, James M.

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 1.29 MB

english, 2009

5

Species Tree Inference by Minimizing Deep Coalescences

Than, Cuong, Nakhleh, Luay, Li, Wen-Hsiung

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 573 KB

english, 2009

6

Statistical Use of Argonaute Expression and RISC Assembly in microRNA Target Identification

Stanhope, Stephen A., Sengupta, Srikumar, den Boon, Johan, Ahlquist, Paul, Newton, Michael A., Zhang, Weixiong

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 612 KB

english, 2009

7

Estimating the Continuous-Time Dynamics of Energy and Fat Metabolism in Mice

Guo, Juen, Hall, Kevin D., Stelling, Jorg

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 318 KB

english, 2009

8

Parallel Computational Subunits in Dentate Granule Cells Generate Multiple Place Fields

Ujfalussy, Balázs, Kiss, Tamás, Érdi, Péter, Gutkin, Boris S.

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 822 KB

english, 2009

9

Influence of Sequence Changes and Environment on Intrinsically Disordered Proteins

Mohan, Amrita, Uversky, Vladimir N., Radivojac, Predrag, Nussinov, Ruth

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 479 KB

english, 2009

10

Thermodynamic Selection of Steric Zipper Patterns in the Amyloid Cross-β Spine

Park, Jiyong, Kahng, Byungnam, Hwang, Wonmuk, Nussinov, Ruth

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 1.56 MB

english, 2009

11

The Role of Ongoing Dendritic Oscillations in Single-Neuron Dynamics

Remme, Michiel W. H., Lengyel, Máté, Gutkin, Boris S., Friston, Karl J.

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 586 KB

english, 2009

12

A Structured Model of Video Reproduces Primary Visual Cortical Organisation

Berkes, Pietro, Turner, Richard E., Sahani, Maneesh, Kording, Konrad

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 903 KB

english, 2009

13

A Combinatorial Approach to Detect Coevolved Amino Acid Networks in Protein Families of Variable Divergence

Baussand, Julie, Carbone, Alessandra, Dunbrack, Roland

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 1.14 MB

english, 2009

14

Global Motions of the Nuclear Pore Complex: Insights from Elastic Network Models

Lezon, Timothy R., Sali, Andrej, Bahar, Ivet, Levitt, Michael

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 1.02 MB

english, 2009

15

Eradication of Chronic Myeloid Leukemia Stem Cells: A Novel Mathematical Model Predicts No Therapeutic Benefit of Adding G-CSF to Imatinib

Foo, Jasmine, Drummond, Mark W., Clarkson, Bayard, Holyoake, Tessa, Michor, Franziska, Fraser, Christophe

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 538 KB

english, 2009

16

Googling Food Webs: Can an Eigenvector Measure Species' Importance for Coextinctions?

Allesina, Stefano, Pascual, Mercedes, Bourne, Philip E.

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 290 KB

english, 2009

17

Evaluation of Objective Uncertainty in the Visual System

Barthelmé, Simon, Mamassian, Pascal, Kording, Konrad

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 666 KB

english, 2009

18

Noise Management by Molecular Networks

Bruggeman, Frank J., Blüthgen, Nils, Westerhoff, Hans V., Sauro, Herbert M.

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 328 KB

english, 2009

19

A Statistical Model to Identify Differentially Expressed Proteins in 2D PAGE Gels

Wu, Steven H., Black, Michael A., North, Robyn A., Atkinson, Kelly R., Rodrigo, Allen G., Sherman, Jamie

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 283 KB

english, 2009

20

Conserved Expression Patterns Predict microRNA Targets

Ritchie, William, Rajasekhar, Megha, Flamant, Stephane, Rasko, John E. J., Ohler, Uwe

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 295 KB

english, 2009

21

A Novel Scoring Approach for Protein Co-Purification Data Reveals High Interaction Specificity

Yu, Xueping, Ivanic, Joseph, Wallqvist, Anders, Reifman, Jaques, Stormo, Gary D.

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 1.72 MB

english, 2009

22

Bayesian Phylogeography Finds Its Roots

Lemey, Philippe, Rambaut, Andrew, Drummond, Alexei J., Suchard, Marc A., Fraser, Christophe

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 5.85 MB

english, 2009

23

Chemically Based Mathematical Model for Development of Cerebral Cortical Folding Patterns

Striegel, Deborah A., Hurdal, Monica K., Friston, Karl J.

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 292 KB

english, 2009

24

Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures

Hoffmann, Steve, Otto, Christian, Kurtz, Stefan, Sharma, Cynthia M., Khaitovich, Philipp, Vogel, Jörg, Stadler, Peter F., Hackermüller, Jörg, Searls, David B.

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 712 KB

english, 2009

25

Predicting the Evolution of Sex on Complex Fitness Landscapes

Misevic, Dusan, Kouyos, Roger D., Bonhoeffer, Sebastian, Bergstrom, Carl T.

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 438 KB

english, 2009

26

A Computational Analysis of ATP Binding of SV40 Large Tumor Antigen Helicase Motor

Shi, Yemin, Liu, Hanbin, Gai, Dahai, Ma, Jianpeng, Chen, Xiaojiang S., Elber, Ron

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 1.21 MB

english, 2009

27

Integrating Extrinsic and Intrinsic Cues into a Minimal Model of Lineage Commitment for Hematopoietic Progenitors

Palani, Santhosh, Sarkar, Casim A., Asthagiri, Anand R.

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 1.23 MB

english, 2009

28

Interrogating and Predicting Tolerated Sequence Diversity in Protein Folds: Application to E. elaterium Trypsin Inhibitor-II Cystine-Knot Miniprotein

Lahti, Jennifer L., Silverman, Adam P., Cochran, Jennifer R., Briggs, James M.

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 722 KB

english, 2009

29

Brief Overview of Bioinformatics Activities in Singapore

Eisenhaber, Frank, Kwoh, Chee-Keong, Ng, See-Kiong, Sung, Wing-King, Wong, Limsoon, Bourne, Philip E.

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 88 KB

english, 2009

30

Ten Simple Rules for Chairing a Scientific Session

Bateman, Alex, Bourne, Philip E.

Journal:

PLoS Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 53 KB

english, 2009