Volume 4; Issue 3

PLoS Computational Biology

Volume 4; Issue 3

1

Evolutionary Patterns in the Sequence and Structure of Transfer RNA: Early Origins of Archaea and Viruses

Sun, Feng-Jie, Caetano-Anollés, Gustavo, Bourne, Philip E.

Journal:

PLoS Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 239 KB

english, 2008

2

Representing Where along with What Information in a Model of a Cortical Patch

Roudi, Yasser, Treves, Alessandro, Friston, Karl J.

Journal:

PLoS Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 1.12 MB

english, 2008

3

Modeling the Effects of Cell Cycle M-phase Transcriptional Inhibition on Circadian Oscillation

Kang, Bin, Li, Yuan-Yuan, Chang, Xiao, Liu, Lei, Li, Yi-Xue, Sauro, Herbert M.

Journal:

PLoS Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 508 KB

english, 2008

4

Open Access: Taking Full Advantage of the Content

Bourne, Philip E., Fink, J. Lynn, Gerstein, Mark

Journal:

PLoS Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 78 KB

english, 2008

5

A Hidden Feedback in Signaling Cascades Is Revealed

Ventura, Alejandra C., Sepulchre, Jacques-A., Merajver, Sofía D., Sauro, Herbert M.

Journal:

PLoS Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 587 KB

english, 2008

6

A Continuum Model for Metabolic Gas Exchange in Pear Fruit

Ho, Q. Tri, Verboven, Pieter, Verlinden, Bert E., Lammertyn, Jeroen, Vandewalle, Stefan, Nicolaï, Bart M., Banga, Julio

Journal:

PLoS Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 615 KB

english, 2008

7

Robustness of Learning That Is Based on Covariance-Driven Synaptic Plasticity

Loewenstein, Yonatan, Friston, Karl J.

Journal:

PLoS Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 247 KB

english, 2008

8

The Evolution of Robust Development and Homeostasis in Artificial Organisms

Basanta, David, Miodownik, Mark, Baum, Buzz, Hunter, Peter

Journal:

PLoS Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 318 KB

english, 2008

9

Shaping Embodied Neural Networks for Adaptive Goal-directed Behavior

Chao, Zenas C., Bakkum, Douglas J., Potter, Steve M., Friston, Karl J.

Journal:

PLoS Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 1.59 MB

english, 2008

10

A Semi-Supervised Method for Predicting Transcription Factor–Gene Interactions in Escherichia coli

Ernst, Jason, Beg, Qasim K., Kay, Krin A., Balázsi, Gábor, Oltvai, Zoltán N., Bar-Joseph, Ziv, Stormo, Gary

Journal:

PLoS Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 557 KB

english, 2008

11

Prediction of Human Disease Genes by Human-Mouse Conserved Coexpression Analysis

Ala, Ugo, Piro, Rosario Michael, Grassi, Elena, Damasco, Christian, Silengo, Lorenzo, Oti, Martin, Provero, Paolo, Di Cunto, Ferdinando, Tucker-Kellogg, Greg

Journal:

PLoS Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 390 KB

english, 2008

12

Entropy Measures Quantify Global Splicing Disorders in Cancer

Ritchie, William, Granjeaud, Samuel, Puthier, Denis, Gautheret, Daniel, Ares, Manuel

Journal:

PLoS Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 985 KB

english, 2008

13

Intrinsically Disordered Proteins Display No Preference for Chaperone Binding In Vivo

Hegyi, Hedi, Tompa, Peter, Harrison, Paul

Journal:

PLoS Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 259 KB

english, 2008

14

Chromophore Protonation State Controls Photoswitching of the Fluoroprotein asFP595

Schäfer, Lars V., Groenhof, Gerrit, Boggio-Pasqua, Martial, Robb, Michael A., Grubmüller, Helmut, Warshel, Arieh

Journal:

PLoS Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 759 KB

english, 2008

15

Computational Biology in Costa Rica: The Role of a Small Country in the Global Context of Bioinformatics

Moreno, Edgardo, Lomonte, Bruno, Gutiérrez, José-María, Bourne, Philip E.

Journal:

PLoS Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 119 KB

english, 2008

16

The Dynamics of Human Body Weight Change

Chow, Carson C., Hall, Kevin D., Bourne, Philip E.

Journal:

PLoS Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 291 KB

english, 2008

17

Src Kinase Conformational Activation: Thermodynamics, Pathways, and Mechanisms

Yang, Sichun, Roux, Benoît, Verkhivker, Gennady

Journal:

PLoS Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 1.72 MB

english, 2008

18

Neurobiological Models of Two-Choice Decision Making Can Be Reduced to a One-Dimensional Nonlinear Diffusion Equation

Roxin, Alex, Ledberg, Anders, Graham, Lyle J.

Journal:

PLoS Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 410 KB

english, 2008

19

Neural Coding of Natural Stimuli: Information at Sub-Millisecond Resolution

Nemenman, Ilya, Lewen, Geoffrey D., Bialek, William, de Ruyter van Steveninck, Rob R., Friston, Karl J.

Journal:

PLoS Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 757 KB

english, 2008

20

Structure of Spontaneous UP and DOWN Transitions Self-Organizing in a Cortical Network Model

Kang, Siu, Kitano, Katsunori, Fukai, Tomoki, Friston, Karl J.

Journal:

PLoS Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 616 KB

english, 2008

21

Uncovering a Macrophage Transcriptional Program by Integrating Evidence from Motif Scanning and Expression Dynamics

Ramsey, Stephen A., Klemm, Sandy L., Zak, Daniel E., Kennedy, Kathleen A., Thorsson, Vesteinn, Li, Bin, Gilchrist, Mark, Gold, Elizabeth S., Johnson, Carrie D., Litvak, Vladimir, Navarro, Garnet, Roac

Journal:

PLoS Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 808 KB

english, 2008

22

Plant Classification from Bat-Like Echolocation Signals

Yovel, Yossi, Franz, Matthias Otto, Stilz, Peter, Schnitzler, Hans-Ulrich, Bourne, Philip E.

Journal:

PLoS Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 711 KB

english, 2008

23

Statistical Modeling of Transcription Factor Binding Affinities Predicts Regulatory Interactions

Manke, Thomas, Roider, Helge G., Vingron, Martin, Levitt, Michael

Journal:

PLoS Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 435 KB

english, 2008

24

Electrotonic Signals along Intracellular Membranes May Interconnect Dendritic Spines and Nucleus

Shemer, Isaac, Brinne, Björn, Tegnér, Jesper, Grillner, Sten, Friston, Karl J.

Journal:

PLoS Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 916 KB

english, 2008