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Volume 42; Issue 6

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Nucleic Acids Research
Volume 42; Issue 6

Nucleic Acids Research

Volume 42; Issue 6

1

Comparative ribosome profiling reveals extensive translational complexity in different Trypanosoma brucei life cycle stages

Vasquez, J.-J., Hon, C.-C., Vanselow, J. T., Schlosser, A., Siegel, T. N.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 628 KB

english, 2014

2

RecA-dependent programmable endonuclease Ref cleaves DNA in two distinct steps

Ronayne, E. A., Cox, M. M.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 3.45 MB

english, 2014

3

Synthetic biology tools for programming gene expression without nutritional perturbations in Saccharomyces cerevisiae

McIsaac, R. S., Gibney, P. A., Chandran, S. S., Benjamin, K. R., Botstein, D.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 571 KB

english, 2014

4

Transcriptional repressor NIR interacts with the p53-inhibiting ubiquitin ligase MDM2

Heyne, K., Forster, J., Schule, R., Roemer, K.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 4.49 MB

english, 2014

5

Targeting and tracing of specific DNA sequences with dTALEs in living cells

Thanisch, K., Schneider, K., Morbitzer, R., Solovei, I., Lahaye, T., Bultmann, S., Leonhardt, H.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 13.33 MB

english, 2014

6

Bisulfighter: accurate detection of methylated cytosines and differentially methylated regions

Saito, Y., Tsuji, J., Mituyama, T.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 3.87 MB

english, 2014

7

Incorporation of thio-pseudoisocytosine into triplex-forming peptide nucleic acids for enhanced recognition of RNA duplexes

Devi, G., Yuan, Z., Lu, Y., Zhao, Y., Chen, G.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 5.26 MB

english, 2014

8

Sugar-modified G-quadruplexes: effects of LNA-, 2'F-RNA- and 2'F-ANA-guanosine chemistries on G-quadruplex structure and stability

Li, Z., Lech, C. J., Phan, A. T.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 1.45 MB

english, 2014

9

A tRNA splicing operon: Archease endows RtcB with dual GTP/ATP cofactor specificity and accelerates RNA ligation

Desai, K. K., Cheng, C. L., Bingman, C. A., Phillips, G. N., Raines, R. T.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 11.64 MB

english, 2014

10

Redirecting splicing with bifunctional oligonucleotides

Brosseau, J.-P., Lucier, J.-F., Lamarche, A.-A., Shkreta, L., Gendron, D., Lapointe, E., Thibault, P., Paquet, E., Perreault, J.-P., Abou Elela, S., Chabot, B.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 6.40 MB

english, 2014

11

Solution structure and tandem DNA recognition of the C-terminal effector domain of PmrA from Klebsiella pneumoniae

Lou, Y.-C., Wang, I., Rajasekaran, M., Kao, Y.-F., Ho, M.-R., Hsu, S.-T. D., Chou, S.-H., Wu, S.-H., Chen, C.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 9.62 MB

english, 2014

12

Mutational analysis of the HIV-1 auxiliary protein Vif identifies independent domains important for the physical and functional interaction with HIV-1 reverse transcriptase

Kataropoulou, A., Bovolenta, C., Belfiore, A., Trabatti, S., Garbelli, A., Porcellini, S., Lupo, R., Maga, G.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 35 KB

english, 2014

13

AUF1 contributes to Cryptochrome1 mRNA degradation and rhythmic translation

Lee, K.-H., Kim, S.-H., Kim, H.-J., Kim, W., Lee, H.-R., Jung, Y., Choi, J.-H., Hong, K. Y., Jang, S. K., Kim, K.-T.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 12.95 MB

english, 2014

14

Cellular localization and dynamics of the Mrr type IV restriction endonuclease of Escherichia coli

Ghosh, A., Passaris, I., Tesfazgi Mebrhatu, M., Rocha, S., Vanoirbeek, K., Hofkens, J., Aertsen, A.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.21 MB

english, 2014

15

Transcriptome-wide investigation of genomic imprinting in chicken

Fresard, L., Leroux, S., Servin, B., Gourichon, D., Dehais, P., Cristobal, M. S., Marsaud, N., Vignoles, F., Bed'hom, B., Coville, J.-L., Hormozdiari, F., Beaumont, C., Zerjal, T., Vignal, A., Morisso

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 7.41 MB

english, 2014

16

Identification of histone 3 variant 2 interacting factors

Latreille, D., Bluy, L., Benkirane, M., Kiernan, R. E.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 3.33 MB

english, 2014

17

Checkpoint kinase 1 negatively regulates somatic hypermutation

Frankenberger, S., Davari, K., Fischer-Burkart, S., Bottcher, K., Tomi, N.-S., Zimber-Strobl, U., Jungnickel, B.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 514 KB

english, 2014

18

Scp160p is required for translational efficiency of codon-optimized mRNAs in yeast

Hirschmann, W. D., Westendorf, H., Mayer, A., Cannarozzi, G., Cramer, P., Jansen, R.-P.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.18 MB

english, 2014

19

Structural insight into the specificity of the B3 DNA-binding domains provided by the co-crystal structure of the C-terminal fragment of BfiI restriction enzyme

Golovenko, D., Manakova, E., Zakrys, L., Zaremba, M., Sasnauskas, G., Gra ulis, S., Siksnys, V.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 6.51 MB

english, 2014

20

Dicer-related helicase 3 forms an obligate dimer for recognizing 22G-RNA

Fitzgerald, M. E., Vela, A., Pyle, A. M.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 4.27 MB

english, 2014

21

Subscriptions

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 49 KB

english, 2014

22

Purification, characterization and crystallization of the human 80S ribosome

Khatter, H., Myasnikov, A. G., Mastio, L., Billas, I. M. L., Birck, C., Stella, S., Klaholz, B. P.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 7.78 MB

english, 2014

23

Three-tiered role of the pioneer factor GATA2 in promoting androgen-dependent gene expression in prostate cancer

Wu, D., Sunkel, B., Chen, Z., Liu, X., Ye, Z., Li, Q., Grenade, C., Ke, J., Zhang, C., Chen, H., Nephew, K. P., Huang, T. H.- M., Liu, Z., Jin, V. X., Wang, Q.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.18 MB

english, 2014

24

Comparison and quantitative verification of mapping algorithms for whole-genome bisulfite sequencing

Kunde-Ramamoorthy, G., Coarfa, C., Laritsky, E., Kessler, N. J., Harris, R. A., Xu, M., Chen, R., Shen, L., Milosavljevic, A., Waterland, R. A.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 5.64 MB

english, 2014

25

Structure modulation of helix 69 from Escherichia coli 23S ribosomal RNA by pseudouridylations

Jiang, J., Aduri, R., Chow, C. S., SantaLucia, J.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 4.88 MB

english, 2014

26

PIP degron proteins, substrates of CRL4Cdt2, and not PIP boxes, interfere with DNA polymerase and focus formation on UV damage

Tsanov, N., Kermi, C., Coulombe, P., Van der Laan, S., Hodroj, D., Maiorano, D.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 14.20 MB

english, 2014

27

Organization of the human mitochondrial transcription initiation complex

Yakubovskaya, E., Guja, K. E., Eng, E. T., Choi, W. S., Mejia, E., Beglov, D., Lukin, M., Kozakov, D., Garcia-Diaz, M.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 5.60 MB

english, 2014

28

Length-dependent processing of telomeres in the absence of telomerase

Fallet, E., Jolivet, P., Soudet, J., Lisby, M., Gilson, E., Teixeira, M. T.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 1.38 MB

english, 2014

29

Simultaneous mapping of transcript ends at single-nucleotide resolution and identification of widespread promoter-associated non-coding RNA governed by TATA elements

Park, D., Morris, A. R., Battenhouse, A., Iyer, V. R.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 14.87 MB

english, 2014

30

G-Quadruplex binding enantiomers show chiral selective interactions with human telomere

Wang, J., Chen, Y., Ren, J., Zhao, C., Qu, X.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 8.14 MB

english, 2014

31

High-resolution functional annotation of human transcriptome: predicting isoform functions by a novel multiple instance-based label propagation method

Li, W., Kang, S., Liu, C.-C., Zhang, S., Shi, Y., Liu, Y., Zhou, X. J.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 6.85 MB

english, 2014

32

p54nrb/NonO and PSF promote U snRNA nuclear export by accelerating its export complex assembly

Izumi, H., McCloskey, A., Shinmyozu, K., Ohno, M.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.52 MB

english, 2014

33

SAPTA: a new design tool for improving TALE nuclease activity

Lin, Y., Fine, E. J., Zheng, Z., Antico, C. J., Voit, R. A., Porteus, M. H., Cradick, T. J., Bao, G.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 4.00 MB

english, 2014

34

LORD-Q: a long-run real-time PCR-based DNA-damage quantification method for nuclear and mitochondrial genome analysis

Lehle, S., Hildebrand, D. G., Merz, B., Malak, P. N., Becker, M. S., Schmezer, P., Essmann, F., Schulze-Osthoff, K., Rothfuss, O.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 382 KB

english, 2014

35

A highly divergent archaeo-eukaryotic primase from the Thermococcus nautilus plasmid, pTN2

Gill, S., Krupovic, M., Desnoues, N., Beguin, P., Sezonov, G., Forterre, P.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.68 MB

english, 2014

36

The light-induced transcriptome of the zebrafish pineal gland reveals complex regulation of the circadian clockwork by light

Ben-Moshe, Z., Alon, S., Mracek, P., Faigenbloom, L., Tovin, A., Vatine, G. D., Eisenberg, E., Foulkes, N. S., Gothilf, Y.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 11.89 MB

english, 2014

37

Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis

Akama, S., Shimizu-Inatsugi, R., Shimizu, K. K., Sese, J.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 5.47 MB

english, 2014

38

Nucleic Acids Research: VOLUME 42 ISSUE 6 2014

Journal:

Nucleic Acids Research

Année:

2014

Fichier:

PDF, 507 KB

2014

39

A dynamic alternative splicing program regulates gene expression during terminal erythropoiesis

Pimentel, H., Parra, M., Gee, S., Ghanem, D., An, X., Li, J., Mohandas, N., Pachter, L., Conboy, J. G.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 1.69 MB

english, 2014

40

Converging pathways involving microRNA-206 and the RNA-binding protein KSRP control post-transcriptionally utrophin A expression in skeletal muscle

Amirouche, A., Tadesse, H., Miura, P., Belanger, G., Lunde, J. A., Cote, J., Jasmin, B. J.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 13.48 MB

english, 2014

41

The amino terminal extension of mammalian mitochondrial RNA polymerase ensures promoter specific transcription initiation

Posse, V., Hoberg, E., Dierckx, A., Shahzad, S., Koolmeister, C., Larsson, N.-G., Wilhelmsson, L. M., Hallberg, B. M., Gustafsson, C. M.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 1.41 MB

english, 2014

42

Active site plasticity enables metal-dependent tuning of Cas5d nuclease activity in CRISPR-Cas type I-C system

Punetha, A., Sivathanu, R., Anand, B.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 5.33 MB

english, 2014

43

Multiple-binding-site mechanism explains concentration-dependent unbinding rates of DNA-binding proteins

Sing, C. E., Olvera de la Cruz, M., Marko, J. F.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 5.50 MB

english, 2014

44

Stabilization of XIAP mRNA through the RNA binding protein HuR regulated by cellular polyamines

Zhang, X., Zou, T., Rao, J. N., Liu, L., Xiao, L., Wang, P.-Y., Cui, Y.-H., Gorospe, M., Wang, J.-Y.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 34 KB

english, 2014

45

A novel intermediate in transcription initiation by human mitochondrial RNA polymerase

Morozov, Y. I., Agaronyan, K., Cheung, A. C. M., Anikin, M., Cramer, P., Temiakov, D.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.41 MB

english, 2014

46

An integrated framework for discovery and genotyping of genomic variants from high-throughput sequencing experiments

Duitama, J., Quintero, J. C., Cruz, D. F., Quintero, C., Hubmann, G., Foulquie-Moreno, M. R., Verstrepen, K. J., Thevelein, J. M., Tohme, J.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 5.25 MB

english, 2014

47

Carbon source-dependent alteration of Puf3p activity mediates rapid changes in the stabilities of mRNAs involved in mitochondrial function

Miller, M. A., Russo, J., Fischer, A. D., Lopez Leban, F. A., Olivas, W. M.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 4.49 MB

english, 2014

48

CpG domains downstream of TSSs promote high levels of gene expression

Krinner, S., Heitzer, A. P., Diermeier, S. D., Obermeier, I., Langst, G., Wagner, R.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.41 MB

english, 2014

49

Binary recombinase systems for high-resolution conditional mutagenesis

Hermann, M., Stillhard, P., Wildner, H., Seruggia, D., Kapp, V., Sanchez-Iranzo, H., Mercader, N., Montoliu, L., Zeilhofer, H. U., Pelczar, P.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 10.85 MB

english, 2014

50

Base excision repair of oxidative DNA damage coupled with removal of a CAG repeat hairpin attenuates trinucleotide repeat expansion

Xu, M., Lai, Y., Torner, J., Zhang, Y., Zhang, Z., Liu, Y.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 11.99 MB

english, 2014

51

Nucleic Acids Research - Editorial Board

Journal:

Nucleic Acids Research

Année:

2014

Fichier:

PDF, 58 KB

2014

52

Substrate specificity of the MUS81-EME2 structure selective endonuclease

Pepe, A., West, S. C.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 5.75 MB

english, 2014

53

Engineering of a conditional allele reveals multiple roles of XRN2 in Caenorhabditis elegans development and substrate specificity in microRNA turnover

Miki, T. S., Ruegger, S., Gaidatzis, D., Stadler, M. B., Grosshans, H.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.43 MB

english, 2014

54

Comparative analysis of affinity-based 5-hydroxymethylation enrichment techniques

Thomson, J. P., Hunter, J. M., Nestor, C. E., Dunican, D. S., Terranova, R., Moggs, J. G., Meehan, R. R.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 37 KB

english, 2014

55

An arginine-aspartate network in the active site of bacterial TruB is critical for catalyzing pseudouridine formation

Friedt, J., Leavens, F. M. V., Mercier, E., Wieden, H.-J., Kothe, U.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 9.20 MB

english, 2014

56

Single molecule analysis of Thermus thermophilus SSB protein dynamics on single-stranded DNA

Zhang, J., Zhou, R., Inoue, J., Mikawa, T., Ha, T.

Journal:

Nucleic Acids Research

Année:

2014

Langue:

english

Fichier:

PDF, 13.67 MB

english, 2014