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Volume 41; Issue 14

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Nucleic Acids Research
Volume 41; Issue 14

Nucleic Acids Research

Volume 41; Issue 14

1

Chromosomal deletions and inversions mediated by TALENs and CRISPR/Cas in zebrafish

Xiao, A., Wang, Z., Hu, Y., Wu, Y., Luo, Z., Yang, Z., Zu, Y., Li, W., Huang, P., Tong, X., Zhu, Z., Lin, S., Zhang, B.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 10.30 MB

english, 2013

2

Strong bending of the DNA double helix

Vologodskii, A., D. Frank-Kamenetskii, M.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 769 KB

english, 2013

3

Discovering high-resolution patterns of differential DNA methylation that correlate with gene expression changes

VanderKraats, N. D., Hiken, J. F., Decker, K. F., Edwards, J. R.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 5.12 MB

english, 2013

4

Uridylation prevents 3' trimming of oligoadenylated mRNAs

Sement, F. M., Ferrier, E., Zuber, H., Merret, R., Alioua, M., Deragon, J.-M., Bousquet-Antonelli, C., Lange, H., Gagliardi, D.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 2.40 MB

english, 2013

5

DNA G-quadruplex formation in response to remote downstream transcription activity: long-range sensing and signal transducing in DNA double helix

Zhang, C., Liu, H.-h., Zheng, K.-w., Hao, Y.-h., Tan, Z.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 713 KB

english, 2013

6

Density-dependent cooperative non-specific binding in solid-phase SELEX affinity selection

Ozer, A., White, B. S., Lis, J. T., Shalloway, D.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.81 MB

english, 2013

7

CARM1 automethylation is controlled at the level of alternative splicing

Wang, L., Charoensuksai, P., Watson, N. J., Wang, X., Zhao, Z., Coriano, C. G., Kerr, L. R., Xu, W.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 4.02 MB

english, 2013

8

UGA codon position-dependent incorporation of selenocysteine into mammalian selenoproteins

Turanov, A. A., Lobanov, A. V., Hatfield, D. L., Gladyshev, V. N.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 2.75 MB

english, 2013

9

CoRAL: predicting non-coding RNAs from small RNA-sequencing data

Leung, Y. Y., Ryvkin, P., Ungar, L. H., Gregory, B. D., Wang, L.-S.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 6.90 MB

english, 2013

10

Nuclear import of RNA polymerase II is coupled with nucleocytoplasmic shuttling of the RNA polymerase II-associated protein 2

Forget, D., Lacombe, A.-A., Cloutier, P., Lavallee-Adam, M., Blanchette, M., Coulombe, B.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 6.78 MB

english, 2013

11

Allelic exclusion of the immunoglobulin heavy chain locus is independent of its nuclear localization in mature B cells

Holwerda, S. J. B., van de Werken, H. J. G., Ribeiro de Almeida, C., Bergen, I. M., de Bruijn, M. J. W., Verstegen, M. J. A. M., Simonis, M., Splinter, E., Wijchers, P. J., Hendriks, R. W., de Laat, W

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 3.96 MB

english, 2013

12

Human TREX component Thoc5 affects alternative polyadenylation site choice by recruiting mammalian cleavage factor I

Katahira, J., Okuzaki, D., Inoue, H., Yoneda, Y., Maehara, K., Ohkawa, Y.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 10.57 MB

english, 2013

13

iPcc: a novel feature extraction method for accurate disease class discovery and prediction

Ren, X., Wang, Y., Zhang, X.-S., Jin, Q.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 14.55 MB

english, 2013

14

Conserved regions of ribonucleoprotein ribonuclease MRP are involved in interactions with its substrate

Esakova, O., Perederina, A., Berezin, I., Krasilnikov, A. S.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.92 MB

english, 2013

15

Modelling of crowded polymers elucidate effects of double-strand breaks in topological domains of bacterial chromosomes

Dorier, J., Stasiak, A.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 3.57 MB

english, 2013

16

Cryo-EM structures of the late-stage assembly intermediates of the bacterial 50S ribosomal subunit

Li, N., Chen, Y., Guo, Q., Zhang, Y., Yuan, Y., Ma, C., Deng, H., Lei, J., Gao, N.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 8.01 MB

english, 2013

17

Expression of a large LINE-1-driven antisense RNA is linked to epigenetic silencing of the metastasis suppressor gene TFPI-2 in cancer

Cruickshanks, H. A., Vafadar-Isfahani, N., Dunican, D. S., Lee, A., Sproul, D., Lund, J. N., Meehan, R. R., Tufarelli, C.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 5.35 MB

english, 2013

18

The role of the C-terminal helix of U1A protein in the interaction with U1hpII RNA

Law, M. J., Lee, D. S., Lee, C. S., Anglim, P. P., Haworth, I. S., Laird-Offringa, I. A.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 4.97 MB

english, 2013

19

Structural dynamics of possible late-stage intermediates in folding of quadruplex DNA studied by molecular simulations

Stadlbauer, P., Krepl, M., Cheatham, T. E., Koca, J., Sponer, J.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 9.55 MB

english, 2013

20

Subscriptions

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 49 KB

english, 2013

21

Real-time single-molecule tethered particle motion analysis reveals mechanistic similarities and contrasts of Flp site-specific recombinase with Cre and Int

Fan, H.-F., Ma, C.-H., Jayaram, M.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 6.02 MB

english, 2013

22

KDM4B is a Master Regulator of the Estrogen Receptor Signalling Cascade

Gaughan, L., Stockley, J., Coffey, K., O'Neill, D., Jones, D. L., Wade, M., Wright, J., Moore, M., Tse, S., Rogerson, L., Robson, C. N.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 758 KB

english, 2013

23

Structural and mechanistic basis of anti-termination of Rho-dependent transcription termination by bacteriophage P4 capsid protein Psu

Ranjan, A., Sharma, S., Banerjee, R., Sen, U., Sen, R.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 19.80 MB

english, 2013

24

Enhancer networks revealed by correlated DNAse hypersensitivity states of enhancers

Malin, J., Aniba, M. R., Hannenhalli, S.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 4.28 MB

english, 2013

25

Prospero-related homeobox 1 (Prox1) functions as a novel modulator of retinoic acid-related orphan receptors - and -mediated transactivation

Takeda, Y., Jetten, A. M.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 9.06 MB

english, 2013

26

Splicing-coupled 3' end formation requires a terminal splice acceptor site, but not intron excision

Davidson, L., West, S.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 666 KB

english, 2013

27

A novel interplay between the Fanconi anemia core complex and ATR-ATRIP kinase during DNA cross-link repair

Tomida, J., Itaya, A., Shigechi, T., Unno, J., Uchida, E., Ikura, M., Masuda, Y., Matsuda, S., Adachi, J., Kobayashi, M., Meetei, A. R., Maehara, Y., Yamamoto, K.-i., Kamiya, K., Matsuura, A., Matsuda

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 3.34 MB

english, 2013

28

Structural insights into the targeting of mRNA GU-rich elements by the three RRMs of CELF1

Edwards, J. M., Long, J., de Moor, C. H., Emsley, J., Searle, M. S.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 12.53 MB

english, 2013

29

ATHLATES: accurate typing of human leukocyte antigen through exome sequencing

Liu, C., Yang, X., Duffy, B., Mohanakumar, T., Mitra, R. D., Zody, M. C., Pfeifer, J. D.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 877 KB

english, 2013

30

Cooperative working of bacterial chromosome replication proteins generated by a reconstituted protein expression system

Fujiwara, K., Katayama, T., Nomura, S.-i. M.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.30 MB

english, 2013

31

Investigation of DNA sequence recognition by a streptomycete MarR family transcriptional regulator through surface plasmon resonance and X-ray crystallography

Stevenson, C. E. M., Assaad, A., Chandra, G., Le, T. B. K., Greive, S. J., Bibb, M. J., Lawson, D. M.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 5.30 MB

english, 2013

32

Prediction of clustered RNA-binding protein motif sites in the mammalian genome

Zhang, C., Lee, K.-Y., Swanson, M. S., Darnell, R. B.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.77 MB

english, 2013

33

Transcriptional cross talk between orphan nuclear receptor ERR and transmembrane transcription factor ATF6 coordinates endoplasmic reticulum stress response

Misra, J., Kim, D.-K., Choi, W., Koo, S.-H., Lee, C.-H., Back, S.-H., Kaufman, R. J., Choi, H.-S.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 2.26 MB

english, 2013

34

Computational analysis of bacterial RNA-Seq data

McClure, R., Balasubramanian, D., Sun, Y., Bobrovskyy, M., Sumby, P., Genco, C. A., Vanderpool, C. K., Tjaden, B.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 6.57 MB

english, 2013

35

CLIP-based prediction of mammalian microRNA binding sites

Liu, C., Mallick, B., Long, D., Rennie, W. A., Wolenc, A., Carmack, C. S., Ding, Y.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 987 KB

english, 2013

36

The pneumococcal MgaSpn virulence transcriptional regulator generates multimeric complexes on linear double-stranded DNA

Solano-Collado, V., Lurz, R., Espinosa, M., Bravo, A.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 10.51 MB

english, 2013

37

Genome-wide quantitative assessment of variation in DNA methylation patterns

Xie, H., Wang, M., de Andrade, A., Bonaldo, M. F., Galat, V., Arndt, K., Rajaram, V., Goldman, S., Tomita, T., Soares, M. B.

Journal:

Nucleic Acids Research

Année:

2013

Langue:

english

Fichier:

PDF, 114 KB

english, 2013