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Volume 40; Issue 4

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Nucleic Acids Research
Volume 40; Issue 4

Nucleic Acids Research

Volume 40; Issue 4

1

An unstructured 5'-coding region of the prfA mRNA is required for efficient translation

Loh, E., Memarpour, F., Vaitkevicius, K., Kallipolitis, B. H., Johansson, J., Sonden, B.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 2.57 MB

english, 2012

2

A non-canonical DNA structure is a binding motif for the transcription factor SP1 in vitro

Raiber, E.-A., Kranaster, R., Lam, E., Nikan, M., Balasubramanian, S.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 2.59 MB

english, 2012

3

Validation of kinetics similarity in qPCR

Bar, T., Kubista, M., Tichopad, A.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 2.26 MB

english, 2012

4

Conformational dynamics of the tetracycline-binding aptamer

Forster, U., Weigand, J. E., Trojanowski, P., Suess, B., Wachtveitl, J.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 5.93 MB

english, 2012

5

Highly organized DnaA-oriC complexes recruit the single-stranded DNA for replication initiation

Ozaki, S., Katayama, T.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 17.41 MB

english, 2012

6

Interferon gamma (IFN- ) disrupts energy expenditure and metabolic homeostasis by suppressing SIRT1 transcription

Li, P., Zhao, Y., Wu, X., Xia, M., Fang, M., Iwasaki, Y., Sha, J., Chen, Q., Xu, Y., Shen, A.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 1.64 MB

english, 2012

7

Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing

Clark, T. A., Murray, I. A., Morgan, R. D., Kislyuk, A. O., Spittle, K. E., Boitano, M., Fomenkov, A., Roberts, R. J., Korlach, J.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 2.16 MB

english, 2012

8

Yeast mitochondrial RNase P, RNase Z and the RNA degradosome are part of a stable supercomplex

Daoud, R., Forget, L., Lang, B. F.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 4.73 MB

english, 2012

9

The SARS-coronavirus nsp7+nsp8 complex is a unique multimeric RNA polymerase capable of both de novo initiation and primer extension

te Velthuis, A. J. W., van den Worm, S. H. E., Snijder, E. J.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 11.18 MB

english, 2012

10

POLYPHEMUS: R package for comparative analysis of RNA polymerase II ChIP-seq profiles by non-linear normalization

Mendoza-Parra, M. A., Sankar, M., Walia, M., Gronemeyer, H.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 10.39 MB

english, 2012

11

Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamer: insight into RNA-binding properties of bacterial Hfq

Someya, T., Baba, S., Fujimoto, M., Kawai, G., Kumasaka, T., Nakamura, K.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 6.42 MB

english, 2012

12

Subscriptions

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 50 KB

english, 2012

13

Beyond translesion synthesis: polymerase fidelity as a potential determinant of microsatellite stability

Hile, S. E., Wang, X., Lee, M. Y. W. T., Eckert, K. A.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 5.06 MB

english, 2012

14

DNA and nucleosomes direct distinct folding of a linker histone H1 C-terminal domain

Fang, H., Clark, D. J., Hayes, J. J.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 4.82 MB

english, 2012

15

The non-autonomous retrotransposon SVA is trans-mobilized by the human LINE-1 protein machinery

Raiz, J., Damert, A., Chira, S., Held, U., Klawitter, S., Hamdorf, M., Lower, J., Stratling, W. H., Lower, R., Schumann, G. G.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 5.64 MB

english, 2012

16

Nucleic Acids Research - Editorial Board

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 58 KB

english, 2012

17

The MOF-containing NSL complex associates globally with housekeeping genes, but activates only a defined subset

Feller, C., Prestel, M., Hartmann, H., Straub, T., Soding, J., Becker, P. B.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 4.56 MB

english, 2012

18

Bio-CAP: a versatile and highly sensitive technique to purify and characterise regions of non-methylated DNA

Blackledge, N. P., Long, H. K., Zhou, J. C., Kriaucionis, S., Patient, R., Klose, R. J.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 9.55 MB

english, 2012

19

Strong epigenetic similarity between maize centromeric and pericentromeric regions at the level of small RNAs, DNA methylation and H3 chromatin modifications

Gent, J. I., Dong, Y., Jiang, J., Dawe, R. K.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 7.46 MB

english, 2012

20

The Caulobacter crescentus DNA-(adenine-N6)-methyltransferase CcrM methylates DNA in a distributive manner

Albu, R. F., Jurkowski, T. P., Jeltsch, A.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 3.78 MB

english, 2012

21

YY1 associates with the macrosatellite DXZ4 on the inactive X chromosome and binds with CTCF to a hypomethylated form in some male carcinomas

Moseley, S. C., Rizkallah, R., Tremblay, D. C., Anderson, B. R., Hurt, M. M., Chadwick, B. P.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 13.32 MB

english, 2012

22

Establishing broad generality of DNA catalysts for site-specific hydrolysis of single-stranded DNA

Xiao, Y., Wehrmann, R. J., Ibrahim, N. A., Silverman, S. K.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 5.02 MB

english, 2012

23

The CHR promoter element controls cell cycle-dependent gene transcription and binds the DREAM and MMB complexes

Muller, G. A., Quaas, M., Schumann, M., Krause, E., Padi, M., Fischer, M., Litovchick, L., DeCaprio, J. A., Engeland, K.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 1.56 MB

english, 2012

24

FANCJ coordinates two pathways that maintain epigenetic stability at G-quadruplex DNA

Sarkies, P., Murat, P., Phillips, L. G., Patel, K. J., Balasubramanian, S., Sale, J. E.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 1.04 MB

english, 2012

25

XNP/dATRX interacts with DREF in the chromatin to regulate gene expression

Valadez-Graham, V., Yoshioka, Y., Velazquez, O., Kawamori, A., Vazquez, M., Neumann, A., Yamaguchi, M., Zurita, M.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 6.17 MB

english, 2012

26

Tissue-specific alternative polyadenylation at the imprinted gene Mest regulates allelic usage at Copg2

MacIsaac, J. L., Bogutz, A. B., Morrissy, A. S., Lefebvre, L.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 1.84 MB

english, 2012

27

Statistical evaluation of improvement in RNA secondary structure prediction

Xu, Z., Almudevar, A., Mathews, D. H.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 393 KB

english, 2012

28

Strand antagonism in RNAi: an explanation of differences in potency between intracellularly expressed siRNA and shRNA

Jin, X., Sun, T., Zhao, C., Zheng, Y., Zhang, Y., Cai, W., He, Q., Taira, K., Zhang, L., Zhou, D.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 3.55 MB

english, 2012

29

Comprehensive survey and geometric classification of base triples in RNA structures

Abu Almakarem, A. S., Petrov, A. I., Stombaugh, J., Zirbel, C. L., Leontis, N. B.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 5.29 MB

english, 2012

30

DNA-guided assembly of biosynthetic pathways promotes improved catalytic efficiency

Conrado, R. J., Wu, G. C., Boock, J. T., Xu, H., Chen, S. Y., Lebar, T., Turnsek, J., Tomsic, N., Avbelj, M., Gaber, R., Koprivnjak, T., Mori, J., Glavnik, V., Vovk, I., Bencina, M., Hodnik, V., Ander

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 625 KB

english, 2012

31

Crystal structure of a heterodimer of editosome interaction proteins in complex with two copies of a cross-reacting nanobody

Park, Y.-J., Pardon, E., Wu, M., Steyaert, J., Hol, W. G. J.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 8.88 MB

english, 2012

32

RecA homology search is promoted by mechanical stress along the scanned duplex DNA

Danilowicz, C., Feinstein, E., Conover, A., Coljee, V. W., Vlassakis, J., Chan, Y.-L., Bishop, D. K., Prentiss, M.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 6.80 MB

english, 2012

33

RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets

Thomas-Chollier, M., Herrmann, C., Defrance, M., Sand, O., Thieffry, D., van Helden, J.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 2.38 MB

english, 2012

34

Interconversion between active and inactive TATA-binding protein transcription complexes in the mouse genome

Choukrallah, M.-A., Kobi, D., Martianov, I., Pijnappel, W. W. M. P., Mischerikow, N., Ye, T., Heck, A. J. R., Timmers, H. T. M., Davidson, I.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 10.15 MB

english, 2012

35

Solution structure and stability of the DNA undecamer duplexes containing oxanine mismatch

Pack, S. P., Morimoto, H., Makino, K., Tajima, K., Kanaori, K.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 6.39 MB

english, 2012

36

SeqTar: an effective method for identifying microRNA guided cleavage sites from degradome of polyadenylated transcripts in plants

Zheng, Y., Li, Y.-F., Sunkar, R., Zhang, W.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 15.38 MB

english, 2012

37

GReEn: a tool for efficient compression of genome resequencing data

Pinho, A. J., Pratas, D., Garcia, S. P.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 210 KB

english, 2012

38

Direct evidence of nuclear Argonaute distribution during transcriptional silencing links the actin cytoskeleton to nuclear RNAi machinery in human cells

Ahlenstiel, C. L., Lim, H. G. W., Cooper, D. A., Ishida, T., Kelleher, A. D., Suzuki, K.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 18.15 MB

english, 2012

39

Epigenetic regulation of human cis-natural antisense transcripts

Conley, A. B., King Jordan, I.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 3.69 MB

english, 2012

40

XRCC4's interaction with XLF is required for coding (but not signal) end joining

Roy, S., Andres, S. N., Vergnes, A., Neal, J. A., Xu, Y., Yu, Y., Lees-Miller, S. P., Junop, M., Modesti, M., Meek, K.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 6.45 MB

english, 2012

41

A human XRCC4-XLF complex bridges DNA

Andres, S. N., Vergnes, A., Ristic, D., Wyman, C., Modesti, M., Junop, M.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 10.89 MB

english, 2012

42

RNA self-cleavage activated by ultraviolet light-induced oxidation

Ariza-Mateos, A., Prieto-Vega, S., Diaz-Toledano, R., Birk, A., Szeto, H., Mena, I., Berzal-Herranz, A., Gomez, J.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 15.83 MB

english, 2012