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Volume 40; Issue 1

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Nucleic Acids Research
Volume 40; Issue 1

Nucleic Acids Research

Volume 40; Issue 1

1

Highly parallel oligonucleotide purification and functionalization using reversible chemistry

York, K. T., Smith, R. C., Yang, R., Melnyk, P. C., Wiley, M. M., Turk, C. M., Ronaghi, M., Gunderson, K. L., Steemers, F. J.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 1.07 MB

english, 2012

2

The biogenesis and characterization of mammalian microRNAs of mirtron origin

Sibley, C. R., Seow, Y., Saayman, S., Dijkstra, K. K., El Andaloussi, S., Weinberg, M. S., Wood, M. J. A.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 1.67 MB

english, 2012

3

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

Friedlander, M. R., Mackowiak, S. D., Li, N., Chen, W., Rajewsky, N.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 1.73 MB

english, 2012

4

mRNA pseudoknot structures can act as ribosomal roadblocks

Tholstrup, J., Oddershede, L. B., Sorensen, M. A.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 2.73 MB

english, 2012

5

Structure of the Trichomonas vaginalis Myb3 DNA-binding domain bound to a promoter sequence reveals a unique C-terminal -hairpin conformation

Wei, S.-Y., Lou, Y.-C., Tsai, J.-Y., Ho, M.-R., Chou, C.-C., Rajasekaran, M., Hsu, H.-M., Tai, J.-H., Hsiao, C.-D., Chen, C.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 8.59 MB

english, 2012

6

DNA damage bypass operates in the S and G2 phases of the cell cycle and exhibits differential mutagenicity

Diamant, N., Hendel, A., Vered, I., Carell, T., Reissner, T., de Wind, N., Geacinov, N., Livneh, Z.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 5.05 MB

english, 2012

7

DNA-induced dimerization of the single-stranded DNA binding telomeric protein Pot1 from Schizosaccharomyces pombe

Nandakumar, J., Cech, T. R.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 1.22 MB

english, 2012

8

Biochemical, inhibition and inhibitor resistance studies of xenotropic murine leukemia virus-related virus reverse transcriptase

Ndongwe, T. P., Adedeji, A. O., Michailidis, E., Ong, Y. T., Hachiya, A., Marchand, B., Ryan, E. M., Rai, D. K., Kirby, K. A., Whatley, A. S., Burke, D. H., Johnson, M., Ding, S., Zheng, Y.-M., Liu, S

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 2.55 MB

english, 2012

9

Genome-wide H4 K16 acetylation by SAS-I is deposited independently of transcription and histone exchange

Heise, F., Chung, H.-R., Weber, J. M., Xu, Z., Klein-Hitpass, L., Steinmetz, L. M., Vingron, M., Ehrenhofer-Murray, A. E.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 6.68 MB

english, 2012

10

How environmental solution conditions determine the compaction velocity of single DNA molecules

Hirano, K., Ichikawa, M., Ishido, T., Ishikawa, M., Baba, Y., Yoshikawa, K.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 3.04 MB

english, 2012

11

La enhances IRES-mediated translation of laminin B1 during malignant epithelial to mesenchymal transition

Petz, M., Them, N., Huber, H., Beug, H., Mikulits, W.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 3.72 MB

english, 2012

12

Epigenetic regulation by RAR maintains ligand-independent transcriptional activity

Laursen, K. B., Wong, P.-M., Gudas, L. J.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 4.35 MB

english, 2012

13

An insulator loop resides between the synthetically interacting elements of the human/rat conserved breast cancer susceptibility locus MCS5A/Mcs5a

Smits, B. M. G., Traun, B. D., Devries, T. L., Tran, A., Samuelson, D., Haag, J. D., Gould, M.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 5.08 MB

english, 2012

14

Activation and repression functions of an SR splicing regulator depend on exonic versus intronic-binding position

Shen, M., Mattox, W.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 6.20 MB

english, 2012

15

Inhibition of p53 acetylation by INHAT subunit SET/TAF-I represses p53 activity

Kim, J.-Y., Lee, K.-S., Seol, J.-E., Yu, K., Chakravarti, D., Seo, S.-B.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 10.98 MB

english, 2012

16

Detection of recombination events in bacterial genomes from large population samples

Marttinen, P., Hanage, W. P., Croucher, N. J., Connor, T. R., Harris, S. R., Bentley, S. D., Corander, J.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 6.78 MB

english, 2012

17

Opening-closing dynamics of the mitochondrial transcription pre-initiation complex

Kim, H., Tang, G.-Q., Patel, S. S., Ha, T.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 7.87 MB

english, 2012

18

Transcription factor Sox10 orchestrates activity of a neural crest-specific enhancer in the vicinity of its gene

Wahlbuhl, M., Reiprich, S., Vogl, M. R., Bosl, M. R., Wegner, M.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 11.40 MB

english, 2012

19

Nuclear colocalization of transcription factor target genes strengthens coregulation in yeast

Dai, Z., Dai, X.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 2.54 MB

english, 2012

20

Thiostrepton inhibits stable 70S ribosome binding and ribosome-dependent GTPase activation of elongation factor G and elongation factor 4

Walter, J. D., Hunter, M., Cobb, M., Traeger, G., Spiegel, P. C.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 5.38 MB

english, 2012

21

Gene prediction with Glimmer for metagenomic sequences augmented by classification and clustering

Kelley, D. R., Liu, B., Delcher, A. L., Pop, M., Salzberg, S. L.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 941 KB

english, 2012

22

tRNAHis-guanylyltransferase establishes tRNAHis identity

Heinemann, I. U., Nakamura, A., O'Donoghue, P., Eiler, D., Soll, D.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 4.44 MB

english, 2012

23

Regulated functional alternative splicing in Drosophila

Venables, J. P., Tazi, J., Juge, F.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 823 KB

english, 2012

24

A promoter DNA demethylation landscape of human hematopoietic differentiation

Calvanese, V., Fernandez, A. F., Urdinguio, R. G., Suarez-Alvarez, B., Mangas, C., Perez-Garcia, V., Bueno, C., Montes, R., Ramos-Mejia, V., Martinez-Camblor, P., Ferrero, C., Assenov, Y., Bock, C., M

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 6.02 MB

english, 2012

25

Targeted detection of in vivo endogenous DNA base damage reveals preferential base excision repair in the transcribed strand

Reis, A. M. C., Mills, W. K., Ramachandran, I., Friedberg, E. C., Thompson, D., Queimado, L.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 658 KB

english, 2012

26

A cross-sample statistical model for SNP detection in short-read sequencing data

Muralidharan, O., Natsoulis, G., Bell, J., Newburger, D., Xu, H., Kela, I., Ji, H., Zhang, N.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 1005 KB

english, 2012

27

Histone hypoacetylation is required to maintain late replication timing of constitutive heterochromatin

Casas-Delucchi, C. S., van Bemmel, J. G., Haase, S., Herce, H. D., Nowak, D., Meilinger, D., Stear, J. H., Leonhardt, H., Cardoso, M. C.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 5.10 MB

english, 2012

28

Nucleic Acids Research - Editorial Board

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 58 KB

english, 2012

29

Fine tuning of RFX/DAF-19-regulated target gene expression through binding to multiple sites in Caenorhabditis elegans

Chu, J. S. C., Tarailo-Graovac, M., Zhang, D., Wang, J., Uyar, B., Tu, D., Trinh, J., Baillie, D. L., Chen, N.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 6.22 MB

english, 2012

30

Optimized detection of transcription factor-binding sites in ChIP-seq experiments

Elo, L. L., Kallio, A., Laajala, T. D., Hawkins, R. D., Korpelainen, E., Aittokallio, T.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 248 KB

english, 2012

31

Differential regulation of RNF8-mediated Lys48- and Lys63-based poly-ubiquitylation

Lok, G. T.-M., Sy, S. M.- H., Dong, S.-S., Ching, Y.-P., Tsao, S. W., Thomson, T. M., Huen, M. S. Y.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 7.89 MB

english, 2012

32

Regulation of chromosomal replication initiation by oriC-proximal DnaA-box clusters in Bacillus subtilis

Okumura, H., Yoshimura, M., Ueki, M., Oshima, T., Ogasawara, N., Ishikawa, S.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 1.19 MB

english, 2012

33

Non-targeting siRNA induces NPGPx expression to cooperate with exoribonuclease XRN2 for releasing the stress

Wei, P.-C., Lo, W.-T., Su, M.-I., Shew, J.-Y., Lee, W.-H.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 2.54 MB

english, 2012

34

Triplet repeat RNA structure and its role as pathogenic agent and therapeutic target

Krzyzosiak, W. J., Sobczak, K., Wojciechowska, M., Fiszer, A., Mykowska, A., Kozlowski, P.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 5.99 MB

english, 2012

35

Integrated genome-wide analysis of transcription factor occupancy, RNA polymerase II binding and steady-state RNA levels identify differentially regulated functional gene classes

Mokry, M., Hatzis, P., Schuijers, J., Lansu, N., Ruzius, F.-P., Clevers, H., Cuppen, E.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 8.53 MB

english, 2012

36

Alanyl-tRNA synthetase genes of Vanderwaltozyma polyspora arose from duplication of a dual-functional predecessor of mitochondrial origin

Chang, C.-P., Tseng, Y.-K., Ko, C.-Y., Wang, C.-C.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 3.92 MB

english, 2012

37

The insertion of two 8-methyl-2'-deoxyguanosine residues in tetramolecular quadruplex structures: trying to orientate the strands

Virgilio, A., Esposito, V., Citarella, G., Pepe, A., Mayol, L., Galeone, A.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 4.48 MB

english, 2012

38

NF- B regulates DNA double-strand break repair in conjunction with BRCA1-CtIP complexes

Volcic, M., Karl, S., Baumann, B., Salles, D., Daniel, P., Fulda, S., Wiesmuller, L.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 2.41 MB

english, 2012

39

A conserved lysine residue of plant Whirly proteins is necessary for higher order protein assembly and protection against DNA damage

Cappadocia, L., Parent, J.-S., Zampini, E., Lepage, E., Sygusch, J., Brisson, N.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 7.52 MB

english, 2012

40

Subscriptions

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 49 KB

english, 2012

41

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

Kircher, M., Sawyer, S., Meyer, M.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 287 KB

english, 2012

42

The genome maintenance factor Mgs1 is targeted to sites of replication stress by ubiquitylated PCNA

Saugar, I., Parker, J. L., Zhao, S., Ulrich, H. D.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 10.21 MB

english, 2012

43

Substrate mimicry: HIV-1 reverse transcriptase recognizes 6-modified-3'-azido-2',3'-dideoxyguanosine-5'-triphosphates as adenosine analogs

Herman, B. D., Schinazi, R. F., Zhang, H.-w., Nettles, J. H., Stanton, R., Detorio, M., Obikhod, A., Pradere, U., Coats, S. J., Mellors, J. W., Sluis-Cremer, N.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 5.66 MB

english, 2012

44

Increased in vivo inhibition of gene expression by combining RNA interference and U1 inhibition

Blazquez, L., Gonzalez-Rojas, S. J., Abad, A., Razquin, N., Abad, X., Fortes, P.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 6.69 MB

english, 2012

45

dsRNA expression in the mouse elicits RNAi in oocytes and low adenosine deamination in somatic cells

Nejepinska, J., Malik, R., Filkowski, J., Flemr, M., Filipowicz, W., Svoboda, P.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 12.54 MB

english, 2012

46

Deep sequencing of virus-infected cells reveals HIV-encoded small RNAs

Schopman, N. C. T., Willemsen, M., Liu, Y. P., Bradley, T., van Kampen, A., Baas, F., Berkhout, B., Haasnoot, J.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 4.66 MB

english, 2012

47

Genomic binding of Pol III transcription machinery and relationship with TFIIS transcription factor distribution in mouse embryonic stem cells

Carriere, L., Graziani, S., Alibert, O., Ghavi-Helm, Y., Boussouar, F., Humbertclaude, H., Jounier, S., Aude, J.-C., Keime, C., Murvai, J., Foglio, M., Gut, M., Gut, I., Lathrop, M., Soutourina, J., G

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 5.10 MB

english, 2012

48

Site-specific isotope labeling of long RNA for structural and mechanistic studies

Kawahara, I., Haruta, K., Ashihara, Y., Yamanaka, D., Kuriyama, M., Toki, N., Kondo, Y., Teruya, K., Ishikawa, J., Furuta, H., Ikawa, Y., Kojima, C., Tanaka, Y.

Journal:

Nucleic Acids Research

Année:

2012

Langue:

english

Fichier:

PDF, 4.16 MB

english, 2012