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Volume 39; Issue 8
Main
Nucleic Acids Research
Volume 39; Issue 8
Nucleic Acids Research
Volume 39; Issue 8
1
Selective interactions of boundaries with upstream region of Abd-B promoter in Drosophila bithorax complex and role of dCTCF in this process
Kyrchanova, O.
,
Ivlieva, T.
,
Toshchakov, S.
,
Parshikov, A.
,
Maksimenko, O.
,
Georgiev, P.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 3.24 MB
Vos balises:
english, 2011
2
c-MYC coordinately regulates ribosomal gene chromatin remodeling and Pol I availability during granulocyte differentiation
Poortinga, G.
,
Wall, M.
,
Sanij, E.
,
Siwicki, K.
,
Ellul, J.
,
Brown, D.
,
Holloway, T. P.
,
Hannan, R. D.
,
McArthur, G. A.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 1.06 MB
Vos balises:
english, 2011
3
VCre/VloxP and SCre/SloxP: new site-specific recombination systems for genome engineering
Suzuki, E.
,
Nakayama, M.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 3.83 MB
Vos balises:
english, 2011
4
Insights into plant biomass conversion from the genome of the anaerobic thermophilic bacterium Caldicellulosiruptor bescii DSM 6725
Dam, P.
,
Kataeva, I.
,
Yang, S.-J.
,
Zhou, F.
,
Yin, Y.
,
Chou, W.
,
Poole, F. L.
,
Westpheling, J.
,
Hettich, R.
,
Giannone, R.
,
Lewis, D. L.
,
Kelly, R.
,
Gilbert, H. J.
,
Henrissat, B.
,
Xu, Y.
,
Adams, M. W. W
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 3.50 MB
Vos balises:
english, 2011
5
Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group
Nunoura, T.
,
Takaki, Y.
,
Kakuta, J.
,
Nishi, S.
,
Sugahara, J.
,
Kazama, H.
,
Chee, G.-J.
,
Hattori, M.
,
Kanai, A.
,
Atomi, H.
,
Takai, K.
,
Takami, H.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 4.56 MB
Vos balises:
english, 2011
6
Fox-3 and PSF interact to activate neural cell-specific alternative splicing
Kim, K. K.
,
Kim, Y. C.
,
Adelstein, R. S.
,
Kawamoto, S.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 2.63 MB
Vos balises:
english, 2011
7
Folding of the lysine riboswitch: importance of peripheral elements for transcriptional regulation
Blouin, S.
,
Chinnappan, R.
,
Lafontaine, D. A.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 7.57 MB
Vos balises:
english, 2011
8
The suboptimal structures find the optimal RNAs: homology search for bacterial non-coding RNAs using suboptimal RNA structures
Panek, J.
,
Krasny, L.
,
Bobek, J.
,
Jezkova, E.
,
Korelusova, J.
,
Vohradsky, J.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 919 KB
Vos balises:
english, 2011
9
Towards a genome-wide transcriptogram: the Saccharomyces cerevisiae case
Rybarczyk-Filho, J. L.
,
Castro, M. A. A.
,
Dalmolin, R. J. S.
,
Moreira, J. C. F.
,
Brunnet, L. G.
,
de Almeida, R. M. C.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 18.84 MB
Vos balises:
english, 2011
10
The translational repressor 4E-BP called to order by eIF4E: new structural insights by SAXS
Gosselin, P.
,
Oulhen, N.
,
Jam, M.
,
Ronzca, J.
,
Cormier, P.
,
Czjzek, M.
,
Cosson, B.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 3.64 MB
Vos balises:
english, 2011
11
Structures and activities of archaeal members of the LigD 3'-phosphoesterase DNA repair enzyme superfamily
Smith, P.
,
Nair, P. A.
,
Das, U.
,
Zhu, H.
,
Shuman, S.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 10.22 MB
Vos balises:
english, 2011
12
A novel method for the efficient and selective identification of 5-hydroxymethylcytosine in genomic DNA
Robertson, A. B.
,
Dahl, J. A.
,
Vagbo, C. B.
,
Tripathi, P.
,
Krokan, H. E.
,
Klungland, A.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 5.07 MB
Vos balises:
english, 2011
13
Molecular breeding of polymerases for resistance to environmental inhibitors
Baar, C.
,
d'Abbadie, M.
,
Vaisman, A.
,
Arana, M. E.
,
Hofreiter, M.
,
Woodgate, R.
,
Kunkel, T. A.
,
Holliger, P.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 2.33 MB
Vos balises:
english, 2011
14
Artificial trans-encoded small non-coding RNAs specifically silence the selected gene expression in bacteria
Man, S.
,
Cheng, R.
,
Miao, C.
,
Gong, Q.
,
Gu, Y.
,
Lu, X.
,
Han, F.
,
Yu, W.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 4.96 MB
Vos balises:
english, 2011
15
Pre-replication complex proteins assemble at regions of low nucleosome occupancy within the Chinese hamster dihydrofolate reductase initiation zone
Lubelsky, Y.
,
Sasaki, T.
,
Kuipers, M. A.
,
Lucas, I.
,
Le Beau, M. M.
,
Carignon, S.
,
Debatisse, M.
,
Prinz, J. A.
,
Dennis, J. H.
,
Gilbert, D. M.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 13.59 MB
Vos balises:
english, 2011
16
Rescue of non-sense mutated p53 tumor suppressor gene by aminoglycosides
Floquet, C.
,
Deforges, J.
,
Rousset, J.-P.
,
Bidou, L.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 1.77 MB
Vos balises:
english, 2011
17
Nucleosome accessibility governed by the dimer/tetramer interface
Bohm, V.
,
Hieb, A. R.
,
Andrews, A. J.
,
Gansen, A.
,
Rocker, A.
,
Toth, K.
,
Luger, K.
,
Langowski, J.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 5.76 MB
Vos balises:
english, 2011
18
Nucleic Acids Research: VOLUME 39 ISSUE 8 2011
Journal:
Nucleic Acids Research
Année:
2011
Fichier:
PDF, 558 KB
Vos balises:
2011
19
Nucleic Acids Research
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 58 KB
Vos balises:
english, 2011
20
A novel regulatory circuit in base excision repair involving AP endonuclease 1, Creb1 and DNA polymerase
Pei, D.-S.
,
Yang, X.-J.
,
Liu, W.
,
Guikema, J. E. J.
,
Schrader, C. E.
,
Strauss, P. R.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 4.43 MB
Vos balises:
english, 2011
21
Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays
Stead, M. B.
,
Marshburn, S.
,
Mohanty, B. K.
,
Mitra, J.
,
Castillo, L. P.
,
Ray, D.
,
van Bakel, H.
,
Hughes, T. R.
,
Kushner, S. R.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 7.52 MB
Vos balises:
english, 2011
22
The relationship between HIV-1 genome RNA dimerization, virion maturation and infectivity
Ohishi, M.
,
Nakano, T.
,
Sakuragi, S.
,
Shioda, T.
,
Sano, K.
,
Sakuragi, J.-i.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 7.60 MB
Vos balises:
english, 2011
23
Mutations in the intersubunit bridge regions of 16S rRNA affect decoding and subunit-subunit interactions on the 70S ribosome
Sun, Q.
,
Vila-Sanjurjo, A.
,
O'Connor, M.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 3.70 MB
Vos balises:
english, 2011
24
Determinants of Nam8-dependent splicing of meiotic pre-mRNAs
Qiu, Z. R.
,
Schwer, B.
,
Shuman, S.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 12.51 MB
Vos balises:
english, 2011
25
Transition dynamics and selection of the distinct S-DNA and strand unpeeling modes of double helix overstretching
Fu, H.
,
Chen, H.
,
Zhang, X.
,
Qu, Y.
,
Marko, J. F.
,
Yan, J.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 5.59 MB
Vos balises:
english, 2011
26
Amplification ratio control system for copy number variation genotyping
Guthrie, P. A. I.
,
Gaunt, T. R.
,
Abdollahi, M. R.
,
Rodriguez, S.
,
Lawlor, D. A.
,
Smith, G. D.
,
Day, I. N. M.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 2.20 MB
Vos balises:
english, 2011
27
Conservation defines functional motifs in the squint/nodal-related 1 RNA dorsal localization element
Gilligan, P. C.
,
Kumari, P.
,
Lim, S.
,
Cheong, A.
,
Chang, A.
,
Sampath, K.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 6.80 MB
Vos balises:
english, 2011
28
RhoA activation participates in rearrangement of processing bodies and release of nucleated AU-rich mRNAs
Takahashi, S.
,
Sakurai, K.
,
Ebihara, A.
,
Kajiho, H.
,
Saito, K.
,
Kontani, K.
,
Nishina, H.
,
Katada, T.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 9.96 MB
Vos balises:
english, 2011
29
Different sequence signatures in the upstream regions of plant and animal tRNA genes shape distinct modes of regulation
Zhang, G.
,
Lukoszek, R.
,
Mueller-Roeber, B.
,
Ignatova, Z.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 3.02 MB
Vos balises:
english, 2011
30
Thermophoretic melting curves quantify the conformation and stability of RNA and DNA
Wienken, C. J.
,
Baaske, P.
,
Duhr, S.
,
Braun, D.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 1.60 MB
Vos balises:
english, 2011
31
Subscriptions
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 49 KB
Vos balises:
english, 2011
32
Poly (ADP-ribose) polymerase (PARP) is not involved in base excision repair but PARP inhibition traps a single-strand intermediate
Strom, C. E.
,
Johansson, F.
,
Uhlen, M.
,
Szigyarto, C. A.-K.
,
Erixon, K.
,
Helleday, T.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 3.42 MB
Vos balises:
english, 2011
33
Two groups of phenylalanine biosynthetic operon leader peptides genes: a high level of apparently incidental frameshifting in decoding Escherichia coli pheL
Gurvich, O. L.
,
Nasvall, S. J.
,
Baranov, P. V.
,
Bjork, G. R.
,
Atkins, J. F.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 9.33 MB
Vos balises:
english, 2011
34
Interaction of STAT6 with its co-activator SRC-1/NCoA-1 is regulated by dephosphorylation of the latter via PP2A
Munz, T.
,
Litterst, C. M.
,
Pfitzner, E.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 5.20 MB
Vos balises:
english, 2011
35
An upstream ORF with non-AUG start codon is translated in vivo but dispensable for translational control of GCN4 mRNA
Zhang, F.
,
Hinnebusch, A. G.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 2.62 MB
Vos balises:
english, 2011
36
Arxes: retrotransposed genes required for adipogenesis
Prokesch, A.
,
Bogner-Strauss, J. G.
,
Hackl, H.
,
Rieder, D.
,
Neuhold, C.
,
Walenta, E.
,
Krogsdam, A.
,
Scheideler, M.
,
Papak, C.
,
Wong, W.-C.
,
Vinson, C.
,
Eisenhaber, F.
,
Trajanoski, Z.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 7.49 MB
Vos balises:
english, 2011
37
Structure-based prediction of RNA-binding domains and RNA-binding sites and application to structural genomics targets
Zhao, H.
,
Yang, Y.
,
Zhou, Y.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 1.14 MB
Vos balises:
english, 2011
38
Structural and functional characterization of the Mycobacterium tuberculosis uridine monophosphate kinase: insights into the allosteric regulation
Labesse, G.
,
Benkali, K.
,
Salard-Arnaud, I.
,
Gilles, A.-M.
,
Munier-Lehmann, H.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 7.06 MB
Vos balises:
english, 2011
39
Efficient detection of RNA-protein interactions using tethered RNAs
Iioka, H.
,
Loiselle, D.
,
Haystead, T. A.
,
Macara, I. G.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 2.00 MB
Vos balises:
english, 2011
40
The chromodomains of CHD1 are critical for enzymatic activity but less important for chromatin localization
Morettini, S.
,
Tribus, M.
,
Zeilner, A.
,
Sebald, J.
,
Campo-Fernandez, B.
,
Scheran, G.
,
Worle, H.
,
Podhraski, V.
,
Fyodorov, D. V.
,
Lusser, A.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 9.38 MB
Vos balises:
english, 2011
41
Expression of CD44 3'-untranslated region regulates endogenous microRNA functions in tumorigenesis and angiogenesis
Jeyapalan, Z.
,
Deng, Z.
,
Shatseva, T.
,
Fang, L.
,
He, C.
,
Yang, B. B.
Journal:
Nucleic Acids Research
Année:
2011
Langue:
english
Fichier:
PDF, 26.24 MB
Vos balises:
english, 2011
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