Volume 37; Issue 17

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Nucleic Acids Research
Volume 37; Issue 17

Nucleic Acids Research

Volume 37; Issue 17

1

Extracting transcription factor targets from ChIP-Seq data

Tuteja, G., White, P., Schug, J., Kaestner, K. H.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 5.43 MB

english, 2009

2

Two-dimensional combinatorial screening and the RNA Privileged Space Predictor program efficiently identify aminoglycoside-RNA hairpin loop interactions

Paul, D. J., Seedhouse, S. J., Disney, M. D.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.44 MB

english, 2009

3

Organization of developmental enhancers in the Drosophila embryo

Papatsenko, D., Goltsev, Y., Levine, M.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 16.25 MB

english, 2009

4

Local combinational variables: an approach used in DNA-binding helix-turn-helix motif prediction with sequence information

Xiong, W., Li, T., Chen, K., Tang, K.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 5.41 MB

english, 2009

5

Predicting nucleosome positions on the DNA: combining intrinsic sequence preferences and remodeler activities

Teif, V. B., Rippe, K.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 5.97 MB

english, 2009

6

Whole-genome analyses reveal genetic instability of Acetobacter pasteurianus

Azuma, Y., Hosoyama, A., Matsutani, M., Furuya, N., Horikawa, H., Harada, T., Hirakawa, H., Kuhara, S., Matsushita, K., Fujita, N., Shirai, M.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 10.09 MB

english, 2009

7

Conformational analysis of nucleic acids revisited: Curves+

Lavery, R., Moakher, M., Maddocks, J. H., Petkeviciute, D., Zakrzewska, K.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 9.14 MB

english, 2009

8

Differences in conformational dynamics of [Pt3(HPTAB)]6+-DNA adducts with various cross-linking modes

Zhu, Y., Wang, Y., Chen, G.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 14.44 MB

english, 2009

9

Silencing of microRNA-155 in mice during acute inflammatory response leads to derepression of c/ebp Beta and down-regulation of G-CSF

Worm, J., Stenvang, J., Petri, A., Frederiksen, K. S., Obad, S., Elmen, J., Hedtjarn, M., Straarup, E. M., Hansen, J. B., Kauppinen, S.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.34 MB

english, 2009

10

Inhibition of ATR protein kinase activity by schisandrin B in DNA damage response

Nishida, H., Tatewaki, N., Nakajima, Y., Magara, T., Ko, K. M., Hamamori, Y., Konishi, T.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.00 MB

english, 2009

11

Separation of 1-23-kb complementary DNA strands by urea-agarose gel electrophoresis

Hegedus, E., Kokai, E., Kotlyar, A., Dombradi, V., Szabo, G.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.40 MB

english, 2009

12

Crystal structure of DNA gyrase B' domain sheds lights on the mechanism for T-segment navigation

Fu, G., Wu, J., Liu, W., Zhu, D., Hu, Y., Deng, J., Zhang, X.-E., Bi, L., Wang, D.-C.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 5.15 MB

english, 2009

13

Biochemical and mutagenic analysis of I-CreII reveals distinct but important roles for both the H-N-H and GIY-YIG motifs

Corina, L. E., Qiu, W., Desai, A., Herrin, D. L.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 8.72 MB

english, 2009

14

A FRET-based assay for characterization of alternative splicing events using peptide nucleic acid fluorescence in situ hybridization

Blanco, A. M., Rausell, L., Aguado, B., Perez-Alonso, M., Artero, R.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 18.17 MB

english, 2009

15

Nucleic Acids Research

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 52 KB

english, 2009

16

Crystal structure and assembly of the functional Nanoarchaeum equitans tRNA splicing endonuclease

Mitchell, M., Xue, S., Erdman, R., Randau, L., Soll, D., Li, H.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 14.43 MB

english, 2009

17

YY1's role in DNA methylation of Peg3 and Xist

Kim, J. D., Kang, K., Kim, J.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 4.98 MB

english, 2009

18

Editing of HIV-1 RNA by the double-stranded RNA deaminase ADAR1 stimulates viral infection

Doria, M., Neri, F., Gallo, A., Farace, M. G., Michienzi, A.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 3.08 MB

english, 2009

19

Molecular dissection of the prototype foamy virus (PFV) RNA 5'-UTR identifies essential elements of a ribosomal shunt

Schepetilnikov, M., Schott, G., Katsarou, K., Thiebeauld, O., Keller, M., Ryabova, L. A.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 3.67 MB

english, 2009

20

The accessory subunit of mitochondrial DNA polymerase determines the DNA content of mitochondrial nucleoids in human cultured cells

Di Re, M., Sembongi, H., He, J., Reyes, A., Yasukawa, T., Martinsson, P., Bailey, L. J., Goffart, S., Boyd-Kirkup, J. D., Wong, T. S., Fersht, A. R., Spelbrink, J. N., Holt, I. J.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 7.77 MB

english, 2009

21

Repair of gaps opposite lesions by homologous recombination in mammalian cells

Adar, S., Izhar, L., Hendel, A., Geacintov, N., Livneh, Z.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 3.31 MB

english, 2009

22

Plant mitochondria possess a short-patch base excision DNA repair pathway

Boesch, P., Ibrahim, N., Paulus, F., Cosset, A., Tarasenko, V., Dietrich, A.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 4.31 MB

english, 2009

23

Subscriptions

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 51 KB

english, 2009

24

The disruptive positions in human G-quadruplex motifs are less polymorphic and more conserved than their neutral counterparts

Nakken, S., Rognes, T., Hovig, E.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 777 KB

english, 2009

25

Studying human telomerase gene transcription by a chromatinized reporter generated by recombinase-mediated targeting of a bacterial artificial chromosome

Wang, S., Zhao, Y., Leiby, M. A., Zhu, J.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 546 KB

english, 2009

26

Conserved principles of mammalian transcriptional regulation revealed by RNA half-life

Friedel, C. C., Dolken, L., Ruzsics, Z., Koszinowski, U. H., Zimmer, R.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.15 MB

english, 2009

27

Importance of randomization in microarray experimental designs with Illumina platforms

Verdugo, R. A., Deschepper, C. F., Munoz, G., Pomp, D., Churchill, G. A.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 4.45 MB

english, 2009

28

Unnatural imidazopyridopyrimidine:naphthyridine base pairs: selective incorporation and extension reaction by Deep Vent (exo- ) DNA polymerase

Ogata, S., Takahashi, M., Minakawa, N., Matsuda, A.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.22 MB

english, 2009

29

Preparation of selective and segmentally labeled single-stranded DNA for NMR by self-primed PCR and asymmetrical endonuclease double digestion

Nelissen, F. H. T., Girard, F. C., Tessari, M., Heus, H. A., Wijmenga, S. S.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 4.79 MB

english, 2009

30

Novel structural determinants in human SECIS elements modulate the translational recoding of UGA as selenocysteine

Latreche, L., Jean-Jean, O., Driscoll, D. M., Chavatte, L.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 4.05 MB

english, 2009

31

Stimulation of homology-directed gene targeting at an endogenous human locus by a nicking endonuclease

van Nierop, G. P., de Vries, A. A. F., Holkers, M., Vrijsen, K. R., Goncalves, M. A. F. V.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 5.61 MB

english, 2009

32

Diversity and dispersal of a ubiquitous protein family: acyl-CoA dehydrogenases

Shen, Y.-Q., Lang, B. F., Burger, G.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 7.72 MB

english, 2009

33

Transient dsDNA breaks during pre-replication complex assembly

Rampakakis, E., Zannis-Hadjopoulos, M.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.03 MB

english, 2009

34

High-throughput sequencing reveals suppressors of Vibrio cholerae rpoE mutations: one fewer porin is enough

Davis, B. M., Waldor, M. K.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.66 MB

english, 2009

35

Conformationally rigid nucleoside probes help understand the role of sugar pucker and nucleobase orientation in the thrombin-binding aptamer

Saneyoshi, H., Mazzini, S., Avino, A., Portella, G., Gonzalez, C., Orozco, M., Marquez, V. E., Eritja, R.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 17.19 MB

english, 2009

36

Nano positioning system reveals the course of upstream and nontemplate DNA within the RNA polymerase II elongation complex

Andrecka, J., Treutlein, B., Arcusa, M. A. I., Muschielok, A., Lewis, R., Cheung, A. C. M., Cramer, P., Michaelis, J.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 5.93 MB

english, 2009