Volume 5; Issue 1

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Microbiome
Volume 5; Issue 1

Microbiome

Volume 5; Issue 1

1

The effect of cigarette smoking on the oral and nasal microbiota

Yu, Guoqin, Phillips, Stephen, Gail, Mitchell H., Goedert, James J., Humphrys, Michael S., Ravel, Jacques, Ren, Yanfang, Caporaso, Neil E.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.01 MB

english, 2017

2

Evolution of gut microbiota composition from birth to 24 weeks in the INFANTMET Cohort

Hill, Cian J., Lynch, Denise B., Murphy, Kiera, Ulaszewska, Marynka, Jeffery, Ian B., O’Shea, Carol Anne, Watkins, Claire, Dempsey, Eugene, Mattivi, Fulvio, Tuohy, Kieran, Ross, R. Paul, Ryan, C. Anth

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.46 MB

english, 2017

3

The interaction between vaginal microbiota, cervical length, and vaginal progesterone treatment for preterm birth risk

Kindinger, Lindsay M., Bennett, Phillip R., Lee, Yun S, Marchesi, Julian R., Smith, Ann, Cacciatore, Stefano, Holmes, Elaine, Nicholson, Jeremy K., Teoh, T. G., MacIntyre, David A.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.26 MB

english, 2017

4

A fast and robust protocol for metataxonomic analysis using RNAseq data

Cox, Jeremy W., Ballweg, Richard A., Taft, Diana H., Velayutham, Prakash, Haslam, David B., Porollo, Aleksey

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.07 MB

english, 2017

5

Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study

Kang, Dae-Wook, Adams, James B., Gregory, Ann C., Borody, Thomas, Chittick, Lauren, Fasano, Alessio, Khoruts, Alexander, Geis, Elizabeth, Maldonado, Juan, McDonough-Means, Sharon, Pollard, Elena L., R

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.68 MB

english, 2017

6

Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads

Huson, Daniel H., Tappu, Rewati, Bazinet, Adam L, Xie, Chao, Cummings, Michael P., Nieselt, Kay, Williams, Rohan

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 4.59 MB

english, 2017

7

Gut microbiota dysbiosis contributes to the development of hypertension

Li, Jing, Zhao, Fangqing, Wang, Yidan, Chen, Junru, Tao, Jie, Tian, Gang, Wu, Shouling, Liu, Wenbin, Cui, Qinghua, Geng, Bin, Zhang, Weili, Weldon, Ryan, Auguste, Kelda, Yang, Lei, Liu, Xiaoyan, Chen,

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 7.19 MB

english, 2017

8

Gut metagenomes of type 2 diabetic patients have characteristic single-nucleotide polymorphism distribution inBacteroides coprocola

Chen, Yaowen, Li, Zongcheng, Hu, Shuofeng, Zhang, Jian, Wu, Jiaqi, Shao, Ningsheng, Bo, Xiaochen, Ni, Ming, Ying, Xiaomin

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 854 KB

english, 2017

9

Gut symbiont enhances insecticide resistance in a significant pest, the oriental fruit flyBactrocera dorsalis(Hendel)

Cheng, Daifeng, Guo, Zijun, Riegler, Markus, Xi, Zhiyong, Liang, Guangwen, Xu, Yijuan

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.63 MB

english, 2017

10

Resistant starch can improve insulin sensitivity independently of the gut microbiota

Bindels, Laure B., Segura Munoz, Rafael R., Gomes-Neto, João Carlos, Mutemberezi, Valentin, Martínez, Inés, Salazar, Nuria, Cody, Elizabeth A., Quintero-Villegas, Maria I., Kittana, Hatem, de los Reye

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.94 MB

english, 2017

11

Microbiota fingerprints lose individually identifying features over time

Wilkins, David, Leung, Marcus H. Y., Lee, Patrick K. H.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 837 KB

english, 2017

12

Sputum DNA sequencing in cystic fibrosis: non-invasive access to the lung microbiome and to pathogen details

Feigelman, Rounak, Kahlert, Christian R., Baty, Florent, Rassouli, Frank, Kleiner, Rebekka L., Kohler, Philipp, Brutsche, Martin H., von Mering, Christian

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.91 MB

english, 2017

13

Deciphering composition and function of the root microbiome of a legume plant

Hartman, Kyle, van der Heijden, Marcel GA, Roussely-Provent, Valexia, Walser, Jean-Claude, Schlaeppi, Klaus

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.56 MB

english, 2017

14

Host genetic variation in mucosal immunity pathways influences the upper airway microbiome

Igartua, Catherine, Davenport, Emily R., Gilad, Yoav, Nicolae, Dan L., Pinto, Jayant, Ober, Carole

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 3.89 MB

english, 2017

15

Ovarian cycling and reproductive state shape the vaginal microbiota in wild baboons

Miller, Elizabeth A., Livermore, Joshua A., Alberts, Susan C., Tung, Jenny, Archie, Elizabeth A.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.35 MB

english, 2017

16

Optimization of DNA extraction for advancing coral microbiota investigations

Weber, Laura, DeForce, Emelia, Apprill, Amy

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.66 MB

english, 2017

17

Erratum to: Evolution of gut microbiota composition from birth to 24 weeks in the INFANTMET Cohort

Hill, Cian J., Lynch, Denise B., Murphy, Kiera, Ulaszewska, Marynka, Jeffery, Ian B., O’Shea, Carol Anne, Watkins, Claire, Dempsey, Eugene, Mattivi, Fulvio, Tuohy, Kieran, Ross, R. Paul, Ryan, C. Anth

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 213 KB

english, 2017

18

MiRKAT-S: a community-level test of association between the microbiota and survival times

Plantinga, Anna, Zhan, Xiang, Zhao, Ni, Chen, Jun, Jenq, Robert R., Wu, Michael C.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 742 KB

english, 2017

19

New evidences on the altered gut microbiota in autism spectrum disorders

Strati, Francesco, Cavalieri, Duccio, Albanese, Davide, De Felice, Claudio, Donati, Claudio, Hayek, Joussef, Jousson, Olivier, Leoncini, Silvia, Renzi, Daniela, Calabrò, Antonio, De Filippo, Carlotta

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.16 MB

english, 2017

20

Structural variability and niche differentiation in the rhizosphere and endosphere bacterial microbiome of field-grown poplar trees

Beckers, Bram, Op De Beeck, Michiel, Weyens, Nele, Boerjan, Wout, Vangronsveld, Jaco

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.13 MB

english, 2017

21

Ancient bacteria of the Ötzi’s microbiome: a genomic tale from the Copper Age

Lugli, Gabriele Andrea, Milani, Christian, Mancabelli, Leonardo, Turroni, Francesca, Ferrario, Chiara, Duranti, Sabrina, van Sinderen, Douwe, Ventura, Marco

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.00 MB

english, 2017

22

Childhood BMI in relation to microbiota in infancy and lifetime antibiotic use

Korpela, K., Zijlmans, M. A. C., Kuitunen, M., Kukkonen, K., Savilahti, E., Salonen, A., de Weerth, C., de Vos, W. M.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.54 MB

english, 2017

23

Normalization and microbial differential abundance strategies depend upon data characteristics

Weiss, Sophie, Xu, Zhenjiang Zech, Peddada, Shyamal, Amir, Amnon, Bittinger, Kyle, Gonzalez, Antonio, Lozupone, Catherine, Zaneveld, Jesse R., Vázquez-Baeza, Yoshiki, Birmingham, Amanda, Hyde, Embriet

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 3.83 MB

english, 2017

24

Simple discovery of bacterial biocatalysts from environmental samples through functional metaproteomics

Sukul, Premankur, Schäkermann, Sina, Bandow, Julia E., Kusnezowa, Anna, Nowrousian, Minou, Leichert, Lars I.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 645 KB

english, 2017

25

Legal immigrants: invasion of alien microbial communities during winter occurring desert dust storms

Weil, Tobias, De Filippo, Carlotta, Albanese, Davide, Donati, Claudio, Pindo, Massimo, Pavarini, Lorenzo, Carotenuto, Federico, Pasqui, Massimiliano, Poto, Luisa, Gabrieli, Jacopo, Barbante, Carlo, Sa

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.22 MB

english, 2017

26

Microbiome and metabolome modifying effects of several cardiovascular disease interventions in apo-E−/−mice

Ryan, Paul M., London, Lis E. E., Bjorndahl, Trent C., Mandal, Rupasri, Murphy, Kiera, Fitzgerald, Gerald F., Shanahan, Fergus, Ross, R. Paul, Wishart, David S., Caplice, Noel M., Stanton, Catherine

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.78 MB

english, 2017

27

Intestinal dysbiosis in preterm infants preceding necrotizing enterocolitis: a systematic review and meta-analysis

Pammi, Mohan, Cope, Julia, Tarr, Phillip I., Warner, Barbara B., Morrow, Ardythe L., Mai, Volker, Gregory, Katherine E., Kroll, J. Simon, McMurtry, Valerie, Ferris, Michael J, Engstrand, Lars, Lilja,

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 3.28 MB

english, 2017

28

Revealing large metagenomic regions through long DNA fragment hybridization capture

Gasc, Cyrielle, Peyret, Pierre

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.27 MB

english, 2017

29

Proteobacteria explain significant functional variability in the human gut microbiome

Bradley, Patrick H., Pollard, Katherine S.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.62 MB

english, 2017

30

Subgingival microbiota dysbiosis in systemic lupus erythematosus: association with periodontal status

Corrêa, Jôice Dias, Calderaro, Débora Cerqueira, Ferreira, Gilda Aparecida, Mendonça, Santuza Maria Souza, Fernandes, Gabriel R., Xiao, E., Teixeira, Antônio Lúcio, Leys, Eugene J., Graves, Dana T., S

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 3.11 MB

english, 2017

31

Reduced microbial diversity in adult survivors of childhood acute lymphoblastic leukemia and microbial associations with increased immune activation

Chua, Ling Ling, Rajasuriar, Reena, Azanan, Mohamad Shafiq, Abdullah, Noor Kamila, Tang, Mei San, Lee, Soo Ching, Woo, Yin Ling, Lim, Yvonne Ai Lian, Ariffin, Hany, Loke, P’ng

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.51 MB

english, 2017

32

Temporal dynamics of the gut microbiota in people sharing a confined environment, a 520-day ground-based space simulation, MARS500

Turroni, Silvia, Rampelli, Simone, Biagi, Elena, Consolandi, Clarissa, Severgnini, Marco, Peano, Clelia, Quercia, Sara, Soverini, Matteo, Carbonero, Franck G., Bianconi, Giovanna, Rettberg, Petra, Can

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.20 MB

english, 2017

33

Symbiosis and microbiome flexibility in calcifying benthic foraminifera of the Great Barrier Reef

Prazeres, Martina, Ainsworth, Tracy, Roberts, T. Edward, Pandolfi, John M., Leggat, William

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.64 MB

english, 2017

34

Exposure to household furry pets influences the gut microbiota of infants at 3–4 months following various birth scenarios

Tun, Hein M., Konya, Theodore, Takaro, Tim K., Brook, Jeffrey R., Chari, Radha, Field, Catherine J., Guttman, David S., Becker, Allan B., Mandhane, Piush J., Turvey, Stuart E., Subbarao, Padmaja, Sear

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.20 MB

english, 2017

35

High-fat feeding rather than obesity drives taxonomical and functional changes in the gut microbiota in mice

Xiao, Liang, Sonne, Si Brask, Feng, Qiang, Chen, Ning, Xia, Zhongkui, Li, Xiaoping, Fang, Zhiwei, Zhang, Dongya, Fjære, Even, Midtbø, Lisa Kolden, Derrien, Muriel, Hugenholtz, Floor, Tang, Longqing, L

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.62 MB

english, 2017

36

Shifts among Eukaryota, Bacteria, and Archaea define the vertical organization of a lake sediment

Wurzbacher, Christian, Fuchs, Andrea, Attermeyer, Katrin, Frindte, Katharina, Grossart, Hans-Peter, Hupfer, Michael, Casper, Peter, Monaghan, Michael T.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1012 KB

english, 2017

37

Mentholation affects the cigarette microbiota by selecting for bacteria resistant to harsh environmental conditions and selecting against potential bacterial pathogens

Chopyk, Jessica, Chattopadhyay, Suhana, Kulkarni, Prachi, Claye, Emma, Babik, Kelsey R., Reid, Molly C., Smyth, Eoghan M., Hittle, Lauren E., Paulson, Joseph N., Cruz-Cano, Raul, Pop, Mihai, Buehler,

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.91 MB

english, 2017

38

Fecal metagenomic profiles in subgroups of patients with myalgic encephalomyelitis/chronic fatigue syndrome

Nagy-Szakal, Dorottya, Williams, Brent L., Mishra, Nischay, Che, Xiaoyu, Lee, Bohyun, Bateman, Lucinda, Klimas, Nancy G., Komaroff, Anthony L., Levine, Susan, Montoya, Jose G., Peterson, Daniel L., Ra

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.76 MB

english, 2017

39

Microbiota-activated CD103+DCs stemming from microbiota adaptation specifically drive γδT17 proliferation and activation

Fleming, Chris, Cai, Yihua, Sun, Xuan, Jala, Venkatakrishna R., Xue, Feng, Morrissey, Samantha, Wei, Yu-ling, Chien, Yueh-hsiu, Zhang, Huang-ge, Haribabu, Bodduluri, Huang, Jian, Yan, Jun

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 7.33 MB

english, 2017

40

Chemical and pathogen-induced inflammation disrupt the murine intestinal microbiome

Borton, Mikayla A., Sabag-Daigle, Anice, Wu, Jikang, Solden, Lindsey M., O’Banion, Bridget S., Daly, Rebecca A., Wolfe, Richard A., Gonzalez, Juan F., Wysocki, Vicki H., Ahmer, Brian M. M., Wrighton,

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.10 MB

english, 2017

41

A critical assessment of the “sterile womb” and “in utero colonization” hypotheses: implications for research on the pioneer infant microbiome

Perez-Muñoz, Maria Elisa, Arrieta, Marie-Claire, Ramer-Tait, Amanda E., Walter, Jens

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.57 MB

english, 2017

42

Differences in gut microbial composition correlate with regional brain volumes in irritable bowel syndrome

Labus, Jennifer S., Hollister, Emily B., Jacobs, Jonathan, Kirbach, Kyleigh, Oezguen, Numan, Gupta, Arpana, Acosta, Jonathan, Luna, Ruth Ann, Aagaard, Kjersti, Versalovic, James, Savidge, Tor, Hsiao,

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.60 MB

english, 2017

43

A powerful microbiome-based association test and a microbial taxa discovery framework for comprehensive association mapping

Hyunwook Koh,Martin J. Blaser,Huilin Li

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.05 MB

english, 2017

44

Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics

Lee, Sonny T. M., Kahn, Stacy A., Delmont, Tom O., Shaiber, Alon, Esen, Özcan C., Hubert, Nathaniel A., Morrison, Hilary G., Antonopoulos, Dionysios A., Rubin, David T., Eren, A. Murat

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.34 MB

english, 2017

45

The effects of inhaled aztreonam on the cystic fibrosis lung microbiome

Heirali, Alya A., Workentine, Matthew L., Acosta, Nicole, Poonja, Ali, Storey, Douglas G., Somayaji, Ranjani, Rabin, Harvey R., Whelan, Fiona J., Surette, Michael G., Parkins, Michael D.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.94 MB

english, 2017

46

Uncovering the trimethylamine-producing bacteria of the human gut microbiota

Rath, Silke, Heidrich, Benjamin, Pieper, Dietmar H., Vital, Marius

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.41 MB

english, 2017

47

Tomato root microbiota andPhytophthora parasitica-associated disease

Larousse, Marie, Rancurel, Corinne, Syska, Camille, Palero, Ferran, Etienne, Catherine, Industri, Benoît, Nesme, Xavier, Bardin, Marc, Galiana, Eric

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.65 MB

english, 2017

48

Compositionally and functionally distinct sinus microbiota in chronic rhinosinusitis patients have immunological and clinically divergent consequences

Cope, Emily K., Goldberg, Andrew N., Pletcher, Steven D., Lynch, Susan V.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.81 MB

english, 2017

49

Optimizing methods and dodging pitfalls in microbiome research

Kim, Dorothy, Hofstaedter, Casey E., Zhao, Chunyu, Mattei, Lisa, Tanes, Ceylan, Clarke, Erik, Lauder, Abigail, Sherrill-Mix, Scott, Chehoud, Christel, Kelsen, Judith, Conrad, Máire, Collman, Ronald G.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 767 KB

english, 2017

50

Changes in microbial ecology after fecal microbiota transplantation for recurrentC. difficileinfection affected by underlying inflammatory bowel disease

Khanna, Sahil, Vazquez-Baeza, Yoshiki, González, Antonio, Weiss, Sophie, Schmidt, Bradley, Muñiz-Pedrogo, David A., Rainey, John F., Kammer, Patricia, Nelson, Heidi, Sadowsky, Michael, Khoruts, Alexan

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 976 KB

english, 2017

51

Bacteriophage–prokaryote dynamics and interaction within anaerobic digestion processes across time and space

Zhang, Junyu, Gao, Qun, Zhang, Qiuting, Wang, Tengxu, Yue, Haowei, Wu, Linwei, Shi, Jason, Qin, Ziyan, Zhou, Jizhong, Zuo, Jiane, Yang, Yunfeng

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.52 MB

english, 2017

52

Diet shifts provoke complex and variable changes in the metabolic networks of the ruminal microbiome

Wolff, Sara M., Ellison, Melinda J., Hao, Yue, Cockrum, Rebecca R., Austin, Kathy J., Baraboo, Michael, Burch, Katherine, Lee, Hyuk Jin, Maurer, Taylor, Patil, Rocky, Ravelo, Andrea, Taxis, Tasia M.,

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.30 MB

english, 2017

53

Improved detection of gene-microbe interactions in the mouse skin microbiota using high-resolution QTL mapping of 16S rRNA transcripts

Meriem Belheouane,Yask Gupta,Sven Künzel,Saleh Ibrahim,John F. Baines

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 3.78 MB

english, 2017

54

Distinguishing potential bacteria-tumor associations from contamination in a secondary data analysis of public cancer genome sequence data

Kelly M. Robinson,Jonathan Crabtree,John S. A. Mattick…

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.43 MB

english, 2017

55

Revised computational metagenomic processing uncovers hidden and biologically meaningful functional variation in the human microbiome

Ohad Manor,Elhanan Borenstein

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 984 KB

english, 2017

56

Erratum to: The gut microbiota in conventional and serrated precursors of colorectal cancer

Brandilyn A. Peters,Christine Dominianni,Jean A. Shapiro,Timothy R. Church…

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 214 KB

english, 2017

57

Erratum to: Ancient bacteria of the Ötzi’s microbiome: a genomic tale from the Copper Age

Gabriele Andrea Lugli,Christian Milani,Leonardo Mancabelli…

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 225 KB

english, 2017

58

Potential for hydrogen-oxidizing chemolithoautotrophic and diazotrophic populations to initiate biofilm formation in oligotrophic, deep terrestrial subsurface waters

Xiaofen Wu,Karsten Pedersen,Johanna Edlund,Lena Eriksson,Mats Åström…

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.08 MB

english, 2017

59

Novel soil-inhabiting clades fill gaps in the fungal tree of life

Leho Tedersoo,Mohammad Bahram,Rasmus Puusepp,R. Henrik Nilsson…

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.35 MB

english, 2017

60

The development of lower respiratory tract microbiome in mice

Nisha Singh,Asheema Vats,Aditi Sharma,Amit Arora,Ashwani Kumar

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.39 MB

english, 2017

61

Aberrant intestinal microbiota due to IL-1 receptor antagonist deficiency promotes IL-17- and TLR4-dependent arthritis

Rebecca Rogier,Thomas H. A. Ederveen,Jos Boekhorst,Harm Wopereis…

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.50 MB

english, 2017

62

How holobionts get sick—toward a unifying scheme of disease

Silvio D. Pitlik,Omry Koren

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 516 KB

english, 2017

63

Diurnal cycling of rhizosphere bacterial communities is associated with shifts in carbon metabolism

Christopher Staley,Abigail P. Ferrieri,Malak M. Tfaily,Yaya Cui…

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.63 MB

english, 2017

64

Symbionts in waiting: the dynamics of incipient endosymbiont complementation and replacement in minimal bacterial communities of psyllids

Jennifer L. Morrow,Aidan A. G. Hall,Markus Riegler

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.68 MB

english, 2017

65

Maternal inheritance of bifidobacterial communities and bifidophages in infants through vertical transmission

Sabrina Duranti,Gabriele Andrea Lugli,Leonardo Mancabelli…

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.56 MB

english, 2017

66

The metabolic footprint of the airway bacterial community in cystic fibrosis

Vaishnavi Narayanamurthy,John M. Sweetnam,Darcy R. Denner,Lena W. Chen…

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 629 KB

english, 2017

67

More than just a gut feeling: constraint-based genome-scale metabolic models for predicting functions of human intestinal microbes

van der Ark, Kees C. H., van Heck, Ruben G. A., Martins Dos Santos, Vitor A. P., Belzer, Clara, de Vos, Willem M.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 836 KB

english, 2017

68

Profiling bacterial communities by MinION sequencing of ribosomal operons

Kerkhof, Lee J., Dillon, Kevin P., Häggblom, Max M., McGuinness, Lora R.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.60 MB

english, 2017

69

Communicating the promise, risks, and ethics of large-scale, open space microbiome and metagenome research

Shamarina, Daria, Stoyantcheva, Iana, Mason, Christopher E., Bibby, Kyle, Elhaik, Eran

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 489 KB

english, 2017

70

Links of gut microbiota composition with alcohol dependence syndrome and alcoholic liver disease

Dubinkina, Veronika B., Tyakht, Alexander V., Odintsova, Vera Y., Yarygin, Konstantin S., Kovarsky, Boris A., Pavlenko, Alexander V., Ischenko, Dmitry S., Popenko, Anna S., Alexeev, Dmitry G., Taraski

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 858 KB

english, 2017

71

Dietary changes in nutritional studies shape the structural and functional composition of the pigs’ fecal microbiome—from days to weeks

Tilocca, Bruno, Burbach, Katharina, Heyer, Charlotte M. E., Hoelzle, Ludwig E., Mosenthin, Rainer, Stefanski, Volker, Camarinha-Silva, Amélia, Seifert, Jana

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.78 MB

english, 2017

72

Non-digestible oligosaccharides directly regulate host kinome to modulate host inflammatory responses without alterations in the gut microbiota

Wu, Richard Y., Määttänen, Pekka, Napper, Scott, Scruten, Erin, Li, Bo, Koike, Yuhki, Johnson-Henry, Kathene C., Pierro, Agostino, Rossi, Laura, Botts, Steven R., Surette, Michael G., Sherman, Philip

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 6.90 MB

english, 2017

73

Virome comparisons in wild-diseased and healthy captive giant pandas

Zhang, Wen, Yang, Shixing, Shan, Tongling, Hou, Rong, Liu, Zhijian, Li, Wang, Guo, Lianghua, Wang, Yan, Chen, Peng, Wang, Xiaochun, Feng, Feifei, Wang, Hua, Chen, Chao, Shen, Quan, Zhou, Chenglin, Hua

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.46 MB

english, 2017

74

A comprehensive evaluation of the sl1p pipeline for 16S rRNA gene sequencing analysis

Whelan, Fiona J., Surette, Michael G.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.68 MB

english, 2017

75

Whole metagenome profiles of particulates collected from the International Space Station

Be, Nicholas A., Avila-Herrera, Aram, Allen, Jonathan E., Singh, Nitin, Checinska Sielaff, Aleksandra, Jaing, Crystal, Venkateswaran, Kasthuri

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.02 MB

english, 2017

76

Towards a balanced view of the bacterial tree of life

Schulz, Frederik, Eloe-Fadrosh, Emiley A., Bowers, Robert M., Jarett, Jessica, Nielsen, Torben, Ivanova, Natalia N., Kyrpides, Nikos C., Woyke, Tanja

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.07 MB

english, 2017

77

Transplanted human fecal microbiota enhanced Guillain Barré syndrome autoantibody responses after Campylobacter jejuni infection in C57BL/6 mice

Brooks, Phillip T., Brakel, Kelsey A., Bell, Julia A., Bejcek, Christopher E., Gilpin, Trey, Brudvig, Jean M., Mansfield, Linda S.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.27 MB

english, 2017

78

Enrichment of beneficial bacteria in the skin microbiota of bats persisting with white-nose syndrome

Lemieux-Labonté, Virginie, Simard, Anouk, Willis, Craig K. R., Lapointe, François-Joseph

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.19 MB

english, 2017

79

Preparing for the crewed Mars journey: microbiota dynamics in the confined Mars500 habitat during simulated Mars flight and landing

Schwendner, Petra, Mahnert, Alexander, Koskinen, Kaisa, Moissl-Eichinger, Christine, Barczyk, Simon, Wirth, Reinhard, Berg, Gabriele, Rettberg, Petra

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.06 MB

english, 2017

80

Pancreatic cyst fluid harbors a unique microbiome

Li, Shan, Fuhler, Gwenny M., BN, Nahush, Jose, Tony, Bruno, Marco J., Peppelenbosch, Maikel P., Konstantinov, Sergey R.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.18 MB

english, 2017

81

Impact of intrapartum antimicrobial prophylaxis upon the intestinal microbiota and the prevalence of antibiotic resistance genes in vaginally delivered full-term neonates

Nogacka, Alicja, Salazar, Nuria, Suárez, Marta, Milani, Christian, Arboleya, Silvia, Solís, Gonzalo, Fernández, Nuria, Alaez, Lidia, Hernández-Barranco, Ana M., de los Reyes-Gavilán, Clara G., Ventura

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.06 MB

english, 2017

82

Identifying predictive features of Clostridium difficile infection recurrence before, during, and after primary antibiotic treatment

Pakpour, Sepideh, Bhanvadia, Amit, Zhu, Roger, Amarnani, Abhimanyu, Gibbons, Sean M., Gurry, Thomas, Alm, Eric J., Martello, Laura A.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.12 MB

english, 2017

83

Impact of prematurity and nutrition on the developing gut microbiome and preterm infant growth

Grier, Alex, Qiu, Xing, Bandyopadhyay, Sanjukta, Holden-Wiltse, Jeanne, Kessler, Haeja A., Gill, Ann L., Hamilton, Brooke, Huyck, Heidie, Misra, Sara, Mariani, Thomas J., Ryan, Rita M., Scholer, Lori,

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.23 MB

english, 2017

84

The rumen microbiome as a reservoir of antimicrobial resistance and pathogenicity genes is directly affected by diet in beef cattle

Auffret, Marc D., Dewhurst, Richard J., Duthie, Carol-Anne, Rooke, John A., John Wallace, R., Freeman, Tom C., Stewart, Robert, Watson, Mick, Roehe, Rainer

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.28 MB

english, 2017

85

Potential and active functions in the gut microbiota of a healthy human cohort

Tanca, Alessandro, Abbondio, Marcello, Palomba, Antonio, Fraumene, Cristina, Manghina, Valeria, Cucca, Francesco, Fiorillo, Edoardo, Uzzau, Sergio

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.31 MB

english, 2017

86

Comparative gut microbiota and resistome profiling of intensive care patients receiving selective digestive tract decontamination and healthy subjects

Buelow, Elena, Bello González, Teresita d. j., Fuentes, Susana, de Steenhuijsen Piters, Wouter A. A., Lahti, Leo, Bayjanov, Jumamurat R., Majoor, Eline A. M., Braat, Johanna C., van Mourik, Maaike S.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 691 KB

english, 2017

87

Community characteristics of the gut microbiomes of competitive cyclists

Petersen, Lauren M., Bautista, Eddy J., Nguyen, Hoan, Hanson, Blake M., Chen, Lei, Lek, Sai H., Sodergren, Erica, Weinstock, George M.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.44 MB

english, 2017

88

Catalogue of antibiotic resistome and host-tracking in drinking water deciphered by a large scale survey

Ma, Liping, Li, Bing, Jiang, Xiao-Tao, Wang, Yu-Lin, Xia, Yu, Li, An-Dong, Zhang, Tong

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.57 MB

english, 2017

89

A novel ultra high-throughput 16S rRNA gene amplicon sequencing library preparation method for the Illumina HiSeq platform

de Muinck, Eric J., Trosvik, Pål, Gilfillan, Gregor D., Hov, Johannes R., Sundaram, Arvind Y. M.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.48 MB

english, 2017

90

Human presence impacts fungal diversity of inflated lunar/Mars analog habitat

Blachowicz, A., Mayer, T., Bashir, M., Pieber, T. R., De León, P., Venkateswaran, K.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.54 MB

english, 2017

91

VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data

Ren, Jie, Ahlgren, Nathan A., Lu, Yang Young, Fuhrman, Jed A., Sun, Fengzhu

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.24 MB

english, 2017

92

Schrödinger’s microbes: Tools for distinguishing the living from the dead in microbial ecosystems

Emerson, Joanne B., Adams, Rachel I., Román, Clarisse M. Betancourt, Brooks, Brandon, Coil, David A., Dahlhausen, Katherine, Ganz, Holly H., Hartmann, Erica M., Hsu, Tiffany, Justice, Nicholas B., Pau

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.64 MB

english, 2017

93

Longitudinal profiling reveals a persistent intestinal dysbiosis triggered by conventional anti-tuberculosis therapy

Namasivayam, Sivaranjani, Maiga, Mamoudou, Yuan, Wuxing, Thovarai, Vishal, Costa, Diego L., Mittereder, Lara R., Wipperman, Matthew F., Glickman, Michael S., Dzutsev, Amiran, Trinchieri, Giorgio, Sher

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 4.24 MB

english, 2017

94

Expanding landscapes of the diversified mcr-1-bearing plasmid reservoirs

Wang, Qingjing, Sun, Jian, Li, Jun, Ding, Youfa, Li, Xing-Ping, Lin, Jingxia, Hassan, Bachar, Feng, Youjun

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1023 KB

english, 2017

95

Genome-resolved metaproteomic characterization of preterm infant gut microbiota development reveals species-specific metabolic shifts and variabilities during early life

Xiong, Weili, Brown, Christopher T., Morowitz, Michael J., Banfield, Jillian F., Hettich, Robert L.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.83 MB

english, 2017

96

Normal milk microbiome is reestablished following experimental infection with Escherichia coli independent of intramammary antibiotic treatment with a third-generation cephalosporin in bovines

Ganda, Erika K., Gaeta, Natalia, Sipka, Anja, Pomeroy, Brianna, Oikonomou, Georgios, Schukken, Ynte H., Bicalho, Rodrigo C.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.82 MB

english, 2017

97

Cleanliness in context: reconciling hygiene with a modern microbial perspective

Vandegrift, Roo, Bateman, Ashley C., Siemens, Kyla N., Nguyen, May, Wilson, Hannah E., Green, Jessica L., Van Den Wymelenberg, Kevin G., Hickey, Roxana J.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 982 KB

english, 2017

98

Longitudinal development of the gut microbiome and metabolome in preterm neonates with late onset sepsis and healthy controls

Stewart, Christopher J., Embleton, Nicholas D., Marrs, Emma C. L., Smith, Daniel P., Fofanova, Tatiana, Nelson, Andrew, Skeath, Tom, Perry, John D., Petrosino, Joseph F., Berrington, Janet E., Cumming

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.79 MB

english, 2017

99

(Dis)Trust your gut: the gut microbiome in age-related inflammation, health, and disease

Buford, Thomas W.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 875 KB

english, 2017

100

Formula diet driven microbiota shifts tryptophan metabolism from serotonin to tryptamine in neonatal porcine colon

Saraf, Manish Kumar, Piccolo, Brian D., Bowlin, Anne K., Mercer, Kelly E., LeRoith, Tanya, Chintapalli, Sree V., Shankar, Kartik, Badger, Thomas M., Yeruva, Laxmi

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.75 MB

english, 2017

101

Metagenomics of urban sewage identifies an extensively shared antibiotic resistome in China

Su, Jian-Qiang, An, Xin-Li, Li, Bing, Chen, Qing-Lin, Gillings, Michael R., Chen, Hong, Zhang, Tong, Zhu, Yong-Guan

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.51 MB

english, 2017

102

Control of lupus nephritis by changes of gut microbiota

Mu, Qinghui, Zhang, Husen, Liao, Xiaofeng, Lin, Kaisen, Liu, Hualan, Edwards, Michael R., Ahmed, S. Ansar, Yuan, Ruoxi, Li, Liwu, Cecere, Thomas E., Branson, David B., Kirby, Jay L., Goswami, Poorna,

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.54 MB

english, 2017

103

Environmental drivers of viral community composition in Antarctic soils identified by viromics

Adriaenssens, Evelien M., Kramer, Rolf, Van Goethem, Marc W., Makhalanyane, Thulani P., Hogg, Ian, Cowan, Don A.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.15 MB

english, 2017

104

Influence of the pneumococcal conjugate vaccines on the temporal variation of pneumococcal carriage and the nasal microbiota in healthy infants: a longitudinal analysis of a case–control study

Mika, Moana, Maurer, Josua, Korten, Insa, Allemann, Aurélie, Aebi, Suzanne, Brugger, Silvio D., Qi, Weihong, Frey, Urs, Latzin, Philipp, Hilty, Markus

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 4.26 MB

english, 2017

105

Deciphering functional diversification within the lichen microbiota by meta-omics

Cernava, Tomislav, Erlacher, Armin, Aschenbrenner, Ines Aline, Krug, Lisa, Lassek, Christian, Riedel, Katharina, Grube, Martin, Berg, Gabriele

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.65 MB

english, 2017

106

Huanglongbing impairs the rhizosphere-to-rhizoplane enrichment process of the citrus root-associated microbiome

Zhang, Yunzeng, Xu, Jin, Riera, Nadia, Jin, Tao, Li, Jinyun, Wang, Nian

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.44 MB

english, 2017

107

The urinary microbiota of men and women and its changes in women during bacterial vaginosis and antibiotic treatment

Gottschick, Cornelia, Deng, Zhi-Luo, Vital, Marius, Masur, Clarissa, Abels, Christoph, Pieper, Dietmar H., Wagner-Döbler, Irene

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.76 MB

english, 2017

108

Stable engraftment of human microbiota into mice with a single oral gavage following antibiotic conditioning

Staley, Christopher, Kaiser, Thomas, Beura, Lalit K., Hamilton, Matthew J., Weingarden, Alexa R., Bobr, Aleh, Kang, Johnthomas, Masopust, David, Sadowsky, Michael J., Khoruts, Alexander

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.62 MB

english, 2017

109

Perturbed human sub-networks by Fusobacterium nucleatum candidate virulence proteins

Zanzoni, Andreas, Spinelli, Lionel, Braham, Shérazade, Brun, Christine

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.63 MB

english, 2017

110

The structure of the Brassica napus seed microbiome is cultivar-dependent and affects the interactions of symbionts and pathogens

Rybakova, Daria, Mancinelli, Riccardo, Wikström, Mariann, Birch-Jensen, Ann-Sofie, Postma, Joeke, Ehlers, Ralf-Udo, Goertz, Simon, Berg, Gabriele

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 3.91 MB

english, 2017

111

Shifts in coastal sediment oxygenation cause pronounced changes in microbial community composition and associated metabolism

Broman, Elias, Sjöstedt, Johanna, Pinhassi, Jarone, Dopson, Mark

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.37 MB

english, 2017

112

Statin therapy causes gut dysbiosis in mice through a PXR-dependent mechanism

Caparrós-Martín, Jose A., Lareu, Ricky R., Ramsay, Joshua P., Peplies, Jörg, Reen, F. Jerry, Headlam, Henrietta A., Ward, Natalie C., Croft, Kevin D., Newsholme, Philip, Hughes, Jeffery D., O’Gara, Fe

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.40 MB

english, 2017

113

Feed-additive probiotics accelerate yet antibiotics delay intestinal microbiota maturation in broiler chicken

Gao, Pengfei, Ma, Chen, Sun, Zheng, Wang, Lifeng, Huang, Shi, Su, Xiaoquan, Xu, Jian, Zhang, Heping

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.00 MB

english, 2017

114

Oxalobacter formigenes-associated host features and microbial community structures examined using the American Gut Project

Liu, Menghan, Koh, Hyunwook, Kurtz, Zachary D., Battaglia, Thomas, PeBenito, Amanda, Li, Huilin, Nazzal, Lama, Blaser, Martin J.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 3.31 MB

english, 2017

115

Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples

Lewandowska, Dagmara W., Zagordi, Osvaldo, Geissberger, Fabienne-Desirée, Kufner, Verena, Schmutz, Stefan, Böni, Jürg, Metzner, Karin J., Trkola, Alexandra, Huber, Michael

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 990 KB

english, 2017

116

MetaMeta: integrating metagenome analysis tools to improve taxonomic profiling

Piro, Vitor C., Matschkowski, Marcel, Renard, Bernhard Y.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 791 KB

english, 2017

117

Early gut mycobiota and mother-offspring transfer

Schei, Kasper, Avershina, Ekaterina, Øien, Torbjørn, Rudi, Knut, Follestad, Turid, Salamati, Saideh, Ødegård, Rønnaug Astri

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 999 KB

english, 2017

118

Microbial regulation of microRNA expression in the amygdala and prefrontal cortex

Hoban, Alan E., Stilling, Roman M., M. Moloney, Gerard, Moloney, Rachel D., Shanahan, Fergus, Dinan, Timothy G., Cryan, John F., Clarke, Gerard

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.97 MB

english, 2017

119

Learning Microbial Community Structures with Supervised and Unsupervised Non-negative Matrix Factorization

Cai, Yun, Gu, Hong, Kenney, Toby

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.45 MB

english, 2017

120

Microbial phylogeny determines transcriptional response of resistome to dynamic composting processes

Wang, Cheng, Dong, Da, Strong, P. J., Zhu, Weijing, Ma, Zhuang, Qin, Yong, Wu, Weixiang

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 4.01 MB

english, 2017

121

Space-type radiation induces multimodal responses in the mouse gut microbiome and metabolome

Casero, David, Gill, Kirandeep, Sridharan, Vijayalakshmi, Koturbash, Igor, Nelson, Gregory, Hauer-Jensen, Martin, Boerma, Marjan, Braun, Jonathan, Cheema, Amrita K.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 3.27 MB

english, 2017

122

Treatment of biofilms in bacterial vaginosis by an amphoteric tenside pessary-clinical study and microbiota analysis

Gottschick, Cornelia, Deng, Zhi-Luo, Vital, Marius, Masur, Clarissa, Abels, Christoph, Pieper, Dietmar H., Rohde, Manfred, Mendling, Werner, Wagner-Döbler, Irene

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.02 MB

english, 2017

123

Perilipin-2 modulates dietary fat-induced microbial global gene expression profiles in the mouse intestine

Xiong, Xuejian, Bales, Elise S., Ir, Diana, Robertson, Charles E., McManaman, James L., Frank, Daniel N., Parkinson, John

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.04 MB

english, 2017

124

Blood as a route of transmission of uterine pathogens from the gut to the uterus in cows

Jeon, Soo Jin, Cunha, Federico, Vieira-Neto, Achilles, Bicalho, Rodrigo C., Lima, Svetlana, Bicalho, Marcela L., Galvão, Klibs N.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.21 MB

english, 2017

125

Season, but not symbiont state, drives microbiome structure in the temperate coral Astrangia poculata

Sharp, Koty H., Pratte, Zoe A., Kerwin, Allison H., Rotjan, Randi D., Stewart, Frank J.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 3.37 MB

english, 2017

126

Erratum to: Whole metagenome profiles of particulates collected from the International Space Station

Be, Nicholas A., Avila-Herrera, Aram, Allen, Jonathan E., Singh, Nitin, Sielaff, Aleksandra Checinska, Jaing, Crystal, Venkateswaran, Kasthuri

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 376 KB

english, 2017

127

Members of the Candidate Phyla Radiation are functionally differentiated by carbon- and nitrogen-cycling capabilities

Danczak, R. E., Johnston, M. D., Kenah, C., Slattery, M., Wrighton, K. C., Wilkins, M. J.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.57 MB

english, 2017

128

Pre-pregnancy weight, gestational weight gain, and the gut microbiota of mothers and their infants

Stanislawski, Maggie A., Dabelea, Dana, Wagner, Brandie D., Sontag, Marci K., Lozupone, Catherine A., Eggesbø, Merete

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.18 MB

english, 2017

129

Collection of non-meconium stool on fecal occult blood cards is an effective method for fecal microbiota studies in infants

Wong, Wendy S.W., Clemency, Nicole, Klein, Elisabeth, Provenzano, Marina, Iyer, Ramaswamy, Niederhuber, John E., Hourigan, Suchitra K.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 710 KB

english, 2017

130

Erratum to: The development of lower respiratory tract microbiome in mice

Singh, Nisha, Vats, Asheema, Sharma, Aditi, Arora, Amit, Kumar, Ashwani

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 211 KB

english, 2017

131

More than 2500 years of oil exposure shape sediment microbiomes with the potential for syntrophic degradation of hydrocarbons linked to methanogenesis

Michas, Antonios, Vestergaard, Gisle, Trautwein, Kathleen, Avramidis, Pavlos, Hatzinikolaou, Dimitris G., Vorgias, Constantinos E., Wilkes, Heinz, Rabus, Ralf, Schloter, Michael, Schöler, Anne

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.09 MB

english, 2017

132

Recent urbanization in China is correlated with a Westernized microbiome encoding increased virulence and antibiotic resistance genes

Winglee, Kathryn, Howard, Annie Green, Sha, Wei, Gharaibeh, Raad Z., Liu, Jiawu, Jin, Donghui, Fodor, Anthony A., Gordon-Larsen, Penny

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.75 MB

english, 2017

133

Metagenomic characterization of ambulances across the USA

O’Hara, Niamh B., Reed, Harry J., Afshinnekoo, Ebrahim, Harvin, Donell, Caplan, Nora, Rosen, Gail, Frye, Brook, Woloszynek, Stephen, Ounit, Rachid, Levy, Shawn, Butler, Erin, Mason, Christopher E.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.33 MB

english, 2017

134

Feed in summer, rest in winter: microbial carbon utilization in forest topsoil

Žifčáková, Lucia, Větrovský, Tomáš, Lombard, Vincent, Henrissat, Bernard, Howe, Adina, Baldrian, Petr

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.57 MB

english, 2017

135

Associations among dietary non-fiber carbohydrate, ruminal microbiota and epithelium G-protein-coupled receptor, and histone deacetylase regulations in goats

Shen, Hong, Lu, Zhongyan, Xu, Zhihui, Chen, Zhan, Shen, Zanming

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.43 MB

english, 2017

136

Models of microbiome evolution incorporating host and microbial selection

Zeng, Qinglong, Wu, Steven, Sukumaran, Jeet, Rodrigo, Allen

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.14 MB

english, 2017

137

Bottled aqua incognita: microbiota assembly and dissolved organic matter diversity in natural mineral waters

Lesaulnier, Celine C., Herbold, Craig W., Pelikan, Claus, Berry, David, Gérard, Cédric, Le Coz, Xavier, Gagnot, Sophie, Niggemann, Jutta, Dittmar, Thorsten, Singer, Gabriel A., Loy, Alexander

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.47 MB

english, 2017

138

City-scale distribution and dispersal routes of mycobiome in residences

Tong, Xinzhao, Leung, Marcus H. Y., Wilkins, David, Lee, Patrick K. H.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.78 MB

english, 2017

139

Microbes and associated soluble and volatile chemicals on periodically wet household surfaces

Adams, Rachel I., Lymperopoulou, Despoina S., Misztal, Pawel K., De Cassia Pessotti, Rita, Behie, Scott W., Tian, Yilin, Goldstein, Allen H., Lindow, Steven E., Nazaroff, William W., Taylor, John W.,

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.27 MB

english, 2017

140

Interactive effects of temperature, organic carbon, and pipe material on microbiota composition and Legionella pneumophila in hot water plumbing systems

Proctor, Caitlin R., Dai, Dongjuan, Edwards, Marc A., Pruden, Amy

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 3.27 MB

english, 2017

141

Correction to: Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples

Lewandowska, Dagmara W., Zagordi, Osvaldo, Geissberger, Fabienne-Desirée, Kufner, Verena, Schmutz, Stefan, Böni, Jürg, Metzner, Karin J., Trkola, Alexandra, Huber, Michael

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 215 KB

english, 2017

142

Laboratory colonization stabilizes the naturally dynamic microbiome composition of field collected Dermacentor andersoni ticks

Gall, Cory A., Scoles, Glen A., Magori, Krisztian, Mason, Kathleen L., Brayton, Kelly A.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.26 MB

english, 2017

143

Identification of 76 novel B1 metallo-β-lactamases through large-scale screening of genomic and metagenomic data

Berglund, Fanny, Marathe, Nachiket P., Österlund, Tobias, Bengtsson-Palme, Johan, Kotsakis, Stathis, Flach, Carl-Fredrik, Larsson, D G Joakim, Kristiansson, Erik

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.02 MB

english, 2017

144

Correction to: More than 2500 years of oil exposure shape sediment microbiomes with the potential for syntrophic degradation of hydrocarbons linked to methanogenesis

Michas, Antonios, Vestergaard, Gisle, Trautwein, Kathleen, Avramidis, Pavlos, Hatzinikolaou, Dimitris G., Vorgias, Constantinos E., Wilkes, Heinz, Rabus, Ralf, Schloter, Michael, Schöler, Anne

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 677 KB

english, 2017

145

Individual signatures and environmental factors shape skin microbiota in healthy dogs

Cuscó, Anna, Belanger, Janelle M., Gershony, Liza, Islas-Trejo, Alma, Levy, Kerinne, Medrano, Juan F., Sánchez, Armand, Oberbauer, Anita M., Francino, Olga

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.50 MB

english, 2017

146

Indoor microbiota in severely moisture damaged homes and the impact of interventions

Jayaprakash, Balamuralikrishna, Adams, Rachel I., Kirjavainen, Pirkka, Karvonen, Anne, Vepsäläinen, Asko, Valkonen, Maria, Järvi, Kati, Sulyok, Michael, Pekkanen, Juha, Hyvärinen, Anne, Täubel, Martin

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.85 MB

english, 2017

147

Microbial biodiversity assessment of the European Space Agency’s ExoMars 2016 mission

Koskinen, Kaisa, Rettberg, Petra, Pukall, Rüdiger, Auerbach, Anna, Wink, Lisa, Barczyk, Simon, Perras, Alexandra, Mahnert, Alexander, Margheritis, Diana, Kminek, Gerhard, Moissl-Eichinger, Christine

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.76 MB

english, 2017

148

Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing

Noyes, Noelle R., Weinroth, Maggie E., Parker, Jennifer K., Dean, Chris J., Lakin, Steven M., Raymond, Robert A., Rovira, Pablo, Doster, Enrique, Abdo, Zaid, Martin, Jennifer N., Jones, Kenneth L., Ru

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.21 MB

english, 2017

149

Comparing microbiotas in the upper aerodigestive and lower respiratory tracts of lambs

Glendinning, Laura, Collie, David, Wright, Steven, Rutherford, Kenny M. D., McLachlan, Gerry

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.34 MB

english, 2017

150

Morphological and genetic factors shape the microbiome of a seabird species (Oceanodroma leucorhoa) more than environmental and social factors

Pearce, Douglas S., Hoover, Brian A., Jennings, Sarah, Nevitt, Gabrielle A., Docherty, Kathryn M.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 988 KB

english, 2017

151

Normalization of the microbiota in patients after treatment for colonic lesions

Sze, Marc A., Baxter, Nielson T., Ruffin, Mack T., Rogers, Mary A. M., Schloss, Patrick D.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.10 MB

english, 2017

152

Correction to: Towards a balanced view of the bacterial tree of life

Schulz, Frederik, Eloe-Fadrosh, Emiley A., Bowers, Robert M., Jarett, Jessica, Nielsen, Torben, Ivanova, Natalia N., Kyrpides, Nikos C., Woyke, Tanja

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 226 KB

english, 2017

153

The Inuit gut microbiome is dynamic over time and shaped by traditional foods

Dubois, Geneviève, Girard, Catherine, Lapointe, François-Joseph, Shapiro, B. Jesse

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 891 KB

english, 2017

154

Multi-level comparisons of cloacal, skin, feather and nest-associated microbiota suggest considerable influence of horizontal acquisition on the microbiota assembly of sympatric woodlarks and skylarks

van Veelen, H. Pieter J., Falcao Salles, Joana, Tieleman, B. Irene

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.04 MB

english, 2017

155

Characterization of the upper and lower respiratory tract microbiota in Piedmontese calves

Nicola, Isabella, Cerutti, Francesco, Grego, Elena, Bertone, Iride, Gianella, Paola, D’Angelo, Antonio, Peletto, Simone, Bellino, Claudio

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 799 KB

english, 2017

156

The gut mycobiome of the Human Microbiome Project healthy cohort

Nash, Andrea K., Auchtung, Thomas A., Wong, Matthew C., Smith, Daniel P., Gesell, Jonathan R., Ross, Matthew C., Stewart, Christopher J., Metcalf, Ginger A., Muzny, Donna M., Gibbs, Richard A., Ajami,

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.21 MB

english, 2017

157

Dietary energy drives the dynamic response of bovine rumen viral communities

Anderson, Christopher L., Sullivan, Matthew B., Fernando, Samodha C.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.27 MB

english, 2017

158

MetaLab: an automated pipeline for metaproteomic data analysis

Cheng, Kai, Ning, Zhibin, Zhang, Xu, Li, Leyuan, Liao, Bo, Mayne, Janice, Stintzi, Alain, Figeys, Daniel

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.32 MB

english, 2017

159

Wild eel microbiome reveals that skin mucus of fish could be a natural niche for aquatic mucosal pathogen evolution

Carda-Diéguez, Miguel, Ghai, Rohit, Rodríguez-Valera, Francisco, Amaro, Carmen

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.14 MB

english, 2017

160

Discovery of the fourth mobile sulfonamide resistance gene

Razavi, Mohammad, Marathe, Nachiket P., Gillings, Michael R., Flach, Carl-Fredrik, Kristiansson, Erik, Joakim Larsson, D. G.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.20 MB

english, 2017

161

Quinones are growth factors for the human gut microbiota

Fenn, Kathrin, Strandwitz, Philip, Stewart, Eric J., Dimise, Eric, Rubin, Sarah, Gurubacharya, Shreya, Clardy, Jon, Lewis, Kim

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 3.79 MB

english, 2017

162

Seasonal, spatial, and maternal effects on gut microbiome in wild red squirrels

Ren, Tiantian, Boutin, Stan, Humphries, Murray M., Dantzer, Ben, Gorrell, Jamieson C., Coltman, David W., McAdam, Andrew G., Wu, Martin

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.87 MB

english, 2017

163

Under control: how a dietary additive can restore the gut microbiome and proteomic profile, and improve disease resilience in a marine teleostean fish fed vegetable diets

Piazzon, María Carla, Calduch-Giner, Josep Alvar, Fouz, Belén, Estensoro, Itziar, Simó-Mirabet, Paula, Puyalto, Mónica, Karalazos, Vasileios, Palenzuela, Oswaldo, Sitjà-Bobadilla, Ariadna, Pérez-Sánch

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.33 MB

english, 2017