Volume 9; Issue 8

Journal of Proteome Research

Volume 9; Issue 8

1

Serum Degradome Markers for the Detection of Breast Cancer

van Winden, Annemieke W. J., van den Broek, Irene, Gast, Marie-Christine W., Engwegen, Judith Y. M. N., Sparidans, Rolf W., van Dulken, Eric J., Depla, Annekatrien C. T. M., Cats, Annemieke, Schellens

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 258 KB

english, 2010

2

Proteomic Analysis of Protein Expression Affected by Peroxiredoxin V Knock-Down in Hypoxic Kidney

Yang, Hee-Young, Kwon, Joseph, Cho, Eun-Jin, Choi, Hoon-In, Park, Chiyoul, Park, Hyang-Rim, Park, Sung-Hee, Chung, Kyoung-Jin, Ryoo, Zae Young, Cho, Kyoung-Oh

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.54 MB

english, 2010

3

Proteomic Identification of Carbonylated Proteins and Their Oxidation Sites

Madian, Ashraf G., Regnier, Fred E.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.26 MB

english, 2010

4

Immunoproteomic Approach to Elucidating the Pathogenesis of Cryptococcosis Caused by Cryptococcus gattii

Jobbins, Sarah E., Hill, Cameron J., D’Souza-Basseal, Jocelyn M., Padula, Matthew P., Herbert, Ben R., Krockenberger, Mark B.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.40 MB

english, 2010

5

Cloud-Point Extraction and Delipidation of Porcine Brain Proteins in Combination with Bottom-Up Mass Spectrometry Approaches for Proteome Analysis

Shevchenko, Ganna, Sjödin, Marcus O. D., Malmström, David, Wetterhall, Magnus, Bergquist, Jonas

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.50 MB

english, 2010

6

Analysis of Stage-Specific Expression of Basic Proteins in Leishmania infantum

Brotherton, Marie-Christine, Racine, Gina, Foucher, Aude L., Drummelsmith, Jolyne, Papadopoulou, Barbara, Ouellette, Marc

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 371 KB

english, 2010

7

Profiling the Proteome of the Venom from the Social Wasp Polybia paulista : A Clue to Understand the Envenoming Mechanism

dos Santos, Lucilene Delazari, Santos, Keity Souza, Pinto, José Roberto Aparecido, Dias, Nathalia Baptista, Souza, Bibiana Monson de, dos Santos, Marise Fonseca, Perales, Jonas, Domont, Gilberto Barb

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.69 MB

english, 2010

8

Comprehensive Maternal Serum Proteomic Profiles of Preclinical and Clinical Preeclampsia

Rasanen, Juha, Girsen, Anna, Lu, Xinfang, Lapidus, Jodi A., Standley, Melissa, Reddy, Ashok, Dasari, Surendra, Thomas, Archana, Jacob, Thomas, Pouta, Anneli, Surcel, Helja-Marja, Tolosa, Jorge E., Gra

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.66 MB

english, 2010

9

Development of an Annotated Library of Neutral Human Milk Oligosaccharides

Wu, Shuai, Tao, Nannan, German, J. Bruce, Grimm, Rudolf, Lebrilla, Carlito B.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 5.69 MB

english, 2010

10

Snake Venomics of Bothriechis nigroviridis Reveals Extreme Variability among Palm Pitviper Venoms: Different Evolutionary Solutions for the Same Trophic Purpose

Fernández, Julián, Lomonte, Bruno, Sanz, Libia, Angulo, Yamileth, Gutiérrez, José María, Calvete, Juan J.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.03 MB

english, 2010

11

Quantitative iTRAQ Secretome Analysis of Aspergillus niger Reveals Novel Hydrolytic Enzymes

Adav, Sunil S., Li, An A., Manavalan, Arulmani, Punt, Peter, Sze, Siu Kwan

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.40 MB

english, 2010

12

Identification of Phosphorylation-Dependent Interaction Partners of the Adapter Protein ADAP using Quantitative Mass Spectrometry: SILAC vs 18 O-Labeling

Lange, Sabine, Sylvester, Marc, Schümann, Michael, Freund, Christian, Krause, Eberhard

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.36 MB

english, 2010

13

Quantifying the Impact of Chimera MS/MS Spectra on Peptide Identification in Large-Scale Proteomics Studies

Houel, Stephane, Abernathy, Robert, Renganathan, Kutralanathan, Meyer-Arendt, Karen, Ahn, Natalie G., Old, William M.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.52 MB

english, 2010

14

Comparative Shotgun Proteomics Using Spectral Count Data and Quasi-Likelihood Modeling

Li, Ming, Gray, William, Zhang, Haixia, Chung, Christine H., Billheimer, Dean, Yarbrough, Wendell G., Liebler, Daniel C., Shyr, Yu, Slebos, Robbert J. C.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 554 KB

english, 2010

15

Valproate and Bone Loss: iTRAQ Proteomics Show that Valproate Reduces Collagens and Osteonectin in SMA Cells

Fuller, Heidi R., Man, Nguyen Thi, Lam, Le Thanh, Shamanin, Vladimir A., Androphy, Elliot J., Morris, Glenn E.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.70 MB

english, 2010

16

Metabolomic Approach with LC−MS Reveals Significant Effect of Pressure on Diver’s Plasma

Ciborowski, Michal, Javier Rupérez, F., Martínez-Alcázar, M Paz, Angulo, Santiago, Radziwon, Piotr, Olszanski, Romuald, Kloczko, Janusz, Barbas, Coral

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.02 MB

english, 2010

17

Comparative Proteomic Analysis of Early-Stage Soybean Seedlings Responses to Flooding by Using Gel and Gel-Free Techniques

Nanjo, Yohei, Skultety, Ludovit, Ashraf, Yahya, Komatsu, Setsuko

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.89 MB

english, 2010

18

Integrated Ionization Approach for RRLC−MS/MS-based Metabonomics: Finding Potential Biomarkers for Lung Cancer

An, Zhuoling, Chen, Yanhua, Zhang, Ruiping, Song, Yongmei, Sun, Jianghao, He, Jiuming, Bai, Jinfa, Dong, Lijia, Zhan, Qimin, Abliz, Zeper

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.15 MB

english, 2010

19

Proteomic Profile of Uterine Luminal Fluid from Early Pregnant Ewes

Koch, Jill M., Ramadoss, Jayanth, Magness, Ronald R.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.19 MB

english, 2010

20

Insight into the Sialome of the Bed Bug, Cimex lectularius

Francischetti, Ivo M. B., Calvo, Eric, Andersen, John F., Pham, Van M., Favreau, Amanda J., Barbian, Kent D., Romero, Alvaro, Valenzuela, Jesus G., Ribeiro, José M. C.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 4.18 MB

english, 2010

21

Integrative Study on Proteomics, Molecular Physiology, and Genetics Reveals an Accumulation of Cyclophilin-Like Protein, TaCYP20-2, Leading to an Increase of Rht Protein and Dwarf in a Novel GA-Insensitive Mutant ( gaid ) in Wheat

Li, Beibei, Xu, Wenzhong, Xu, Yunyuan, Zhang, Yuanyuan, Wang, Tai, Bai, Yue, Han, Chenggui, Zhang, Aimin, Xu, Zhihong, Chong, Kang

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.22 MB

english, 2010

22

Proteome Analysis Reveals New Mechanisms of Bcl11b-loss Driven Apoptosis

Karanam, Narasimha Kumar, Grabarczyk, Piotr, Hammer, Elke, Scharf, Christian, Venz, Simone, Gesell-Salazar, Manuela, Barthlen, Winfried, Przybylski, Grzegorz K., Schmidt, Christian A., Völker, Uwe

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.37 MB

english, 2010

23

Proteome Changes in Human Monocytes upon Interaction with Calcium Oxalate Monohydrate Crystals

Singhto, Nilubon, Sintiprungrat, Kitisak, Sinchaikul, Supachok, Chen, Shui-Tein, Thongboonkerd, Visith

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.56 MB

english, 2010

24

Using Power Spectrum Analysis to Evaluate 18 O-Water Labeling Data Acquired from Low Resolution Mass Spectrometers

Sadygov, Rovshan G., Zhao, Yingxin, Haidacher, Sigmund J., Starkey, Jonathan M., Tilton, Ronald G., Denner, Larry

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 856 KB

english, 2010

25

Proteomic Analysis of Hydrogen Photoproduction in Sulfur-Deprived Chlamydomonas Cells

Chen, Mei, Zhao, Le, Sun, Yong-Le, Cui, Su-Xia, Zhang, Li-Fang, Yang, Bin, Wang, Jie, Kuang, Ting-Yun, Huang, Fang

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.91 MB

english, 2010

26

Evaluation of Metalloendopeptidase Lys-N Protease Performance under Different Sample Handling Conditions

Taouatas, Nadia, Heck, Albert J. R., Mohammed, Shabaz

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.63 MB

english, 2010

27

Practical Analytical Approach for the Identification of Biomarker Candidates in Prediabetic State Based upon Metabonomic Study by Ultraperformance Liquid Chromatography Coupled to Electrospray Ionization Time-of-Flight Mass Spectrometry

Tsutsui, Haruhito, Maeda, Toshio, Toyo’oka, Toshimasa, Min, Jun Zhe, Inagaki, Shinsuke, Higashi, Tatsuya, Kagawa, Yoshiyuki

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 5.33 MB

english, 2010

28

Proteomic Analysis of Nuclei Isolated from Cancer Cell Lines Treated with Indenoisoquinoline NSC 724998, a Novel Topoisomerase I Inhibitor

Han, Bingnan, Stockwin, Luke H., Hancock, Chad, Yu, Sherry X., Hollingshead, Melinda G., Newton, Dianne L.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 4.05 MB

english, 2010

29

Proteomic Analysis of Interstitial Fluid in Bone Marrow Identified That Peroxiredoxin 2 Regulates H 2 O 2 Level of Bone Marrow during Aging

Wang, Wei, Gou, Lantu, Xie, Gang, Tong, Aiping, He, Fei, Lu, Zejun, Yao, Yuqin, Liu, Kang, Li, Jie, Tang, Minghai, Chen, Lijuan, Yang, Jinliang, Hu, Huozhen, Wei, Yu-Quan

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.32 MB

english, 2010

30

New Role for LEKTI in Skin Barrier Formation: Label-Free Quantitative Proteomic Identification of Caspase 14 as a Novel Target for the Protease Inhibitor LEKTI

Bennett, Kate, Callard, Robin, Heywood, Wendy, Harper, John, Jayakumar, Arumugam, L.Clayman, Gary, Di, Wei-Li, Mills, Kevin

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.66 MB

english, 2010

31

Combined Proteomic and Transcriptomic Analysis Identifies Differentially Expressed Pathways Associated to Pinus radiata Needle Maturation

Valledor, Luis, Jorrín, Jesús V., Rodríguez, Jose Luis, Lenz, Christof, Meijón, Mónica, Rodríguez, Roberto, Cañal, Maria Jesús

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.81 MB

english, 2010

32

Taking a bite out of the bed bug sialome

Cassiday, Laura

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.74 MB

english, 2010

33

Identification of Tyrosine-Phosphorylated Proteins Associated with Lung Cancer Metastasis using Label-Free Quantitative Analyses

Wu, Hsin-Yi, Tseng, Vincent S., Chen, Lien-Chin, Chang, Hui-Yin, Chuang, I-Chi, Tsay, Yeou-Guang, Liao, Pao-Chi

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.55 MB

english, 2010

34

Cellular Response of Fusarium oxysporum to Crocidolite Asbestos As Revealed by a Combined Proteomic Approach

Chiapello, Marco, Daghino, Stefania, Martino, Elena, Perotto, Silvia

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.87 MB

english, 2010

35

Ultrafast Ultraviolet Photodissociation at 193 nm and its Applicability to Proteomic Workflows

Madsen, James A., Boutz, Daniel R., Brodbelt, Jennifer S.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.28 MB

english, 2010

36

Quantitative Proteomic Profiling of Matched Normal and Tumor Breast Tissues

Sutton, Chris W., Rustogi, Nitin, Gurkan, Cemal, Scally, Andrew, Loizidou, Maria A., Hadjisavvas, Andreas, Kyriacou, Kyriacos

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 696 KB

english, 2010

37

1 H NMR Metabonomic Analysis in Renal Cell Carcinoma: a Possible Diagnostic Tool

Zira, Athina N., Theocharis, Stamatios E., Mitropoulos, Dionisios, Migdalis, Vasilios, Mikros, Emmanuel

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.29 MB

english, 2010

38

Proteomic Profiling of Mammary Carcinomas Identifies C7orf24, a γ-Glutamyl Cyclotransferase, as a Potential Cancer Biomarker

Gromov, Pavel, Gromova, Irina, Friis, Esbern, Timmermans-Wielenga, Vera, Rank, Fritz, Simon, Ronald, Sauter, Guido, Moreira, José M. A.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 5.22 MB

english, 2010

39

Gastric Cancer-Specific Protein Profile Identified Using Endoscopic Biopsy Samples via MALDI Mass Spectrometry

Kim, Hark Kyun, Reyzer, Michelle L., Choi, Il Ju, Kim, Chan Gyoo, Kim, Hee Sung, Oshima, Akira, Chertov, Oleg, Colantonio, Simona, Fisher, Robert J., Allen, Jamie L., Caprioli, Richard M., Green, Jeff

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.44 MB

english, 2010

40

Proteomics Analysis of Distinct Portal Vein Tumor Thrombi in Hepatocellular Carcinoma Patients

Guo, Weixing, Xue, Jie, Shi, Jie, Li, Nan, Shao, Yu, Yu, Xiya, Shen, Feng, Wu, Mengchao, Liu, Shanrong, Cheng, Shuqun

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.85 MB

english, 2010

41

Undesirable Charge-Enhancement of Isobaric Tagged Phosphopeptides Leads to Reduced Identification Efficiency

Thingholm, Tine E., Palmisano, Giuseppe, Kjeldsen, Frank, Larsen, Martin R.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 923 KB

english, 2010

42

The Nitrated Proteome in Heart Mitochondria of the db/db Mouse Model: Characterization of Nitrated Tyrosine Residues in SCOT

Wang, Yuan, Peng, Fuli, Tong, Wei, Sun, Haidan, Xu, Ningzhi, Liu, Siqi

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.60 MB

english, 2010

43

Identification of Disulfide Bonds in Protein Proteolytic Degradation Products Using de novo -Protein Unique Sequence Tags Approach

Shen, Yufeng, Tolić, Nikola, Purvine, Samuel O., Smith, Richard D.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 4.65 MB

english, 2010

44

Small-Molecule-Based Inhibition of Histone Demethylation in Cells Assessed by Quantitative Mass Spectrometry

Mackeen, Mukram M., Kramer, Holger B., Chang, Kai-Hsuan, Coleman, Matthew L., Hopkinson, Richard J., Schofield, Christopher J., Kessler, Benedikt M.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.26 MB

english, 2010

45

Organic−Inorganic Hybrid Silica Monolith Based Immobilized Titanium Ion Affinity Chromatography Column for Analysis of Mitochondrial Phosphoproteome

Hou, Chunyan, Ma, Junfeng, Tao, Dingyin, Shan, Yichu, Liang, Zhen, Zhang, Lihua, Zhang, Yukui

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.29 MB

english, 2010

46

Proteomics Analysis of Differential Expression of Chicken Brain Tissue Proteins in Response to the Neurovirulent H5N1 Avian Influenza Virus Infection

Zou, Wei, Ke, Jianjiang, Zhang, Anding, Zhou, Mingguang, Liao, Yonghong, Zhu, Jiping, Zhou, Hongbo, Tu, Jiagang, Chen, Huanchun, Jin, Meilin

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.16 MB

english, 2010

47

Network Analysis of Primary Hepatocyte Dedifferentiation Using a Shotgun Proteomics Approach

Rowe, Cliff, Goldring, Christopher E. P., Kitteringham, Neil R., Jenkins, Rosalind E., Lane, Brian S., Sanderson, Christopher, Elliott, Victoria, Platt, Vivien, Metcalfe, Peter, Park, B. Kevin

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 64 KB

english, 2010

48

Tissue-Specific Defense and Thermo-Adaptive Mechanisms of Soybean Seedlings under Heat Stress Revealed by Proteomic Approach

Ahsan, Nagib, Donnart, Tifenn, Nouri, Mohammad-Zaman, Komatsu, Setsuko

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.28 MB

english, 2010

49

Quantitative Mass Spectrometry Defines an Oxidative Hotspot in Hemoglobin that is Specifically Protected by Haptoglobin

Pimenova, Tatiana, Pereira, Claudia P., Gehrig, Peter, Buehler, Paul W., Schaer, Dominik J., Zenobi, Renato

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.23 MB

english, 2010

50

High-Throughput Middle-Down Analysis Using an Orbitrap

Cannon, Joe, Lohnes, Karen, Wynne, Colin, Wang, Yan, Edwards, Nathan, Fenselau, Catherine

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 726 KB

english, 2010

51

Identification of Noninvasive Biomarkers for Alcohol-Induced Liver Disease Using Urinary Metabolomics and the Ppara -null Mouse

Manna, Soumen K., Patterson, Andrew D., Yang, Qian, Krausz, Kristopher W., Li, Henghong, Idle, Jeffrey R., Fornace Jr., Albert J., Gonzalez, Frank J.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.88 MB

english, 2010

52

Simple Screening Method for Autoantigen Proteins Using the N-Terminal Biotinylated Protein Library Produced by Wheat Cell-Free Synthesis

Matsuoka, Kazuhiro, Komori, Hiroaki, Nose, Masato, Endo, Yaeta, Sawasaki, Tatsuya

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.55 MB

english, 2010

53

Differential Phosphorylation of Dynamin I Isoforms in Subcellular Compartments Demonstrates the Hidden Complexity of Phosphoproteomes

Chan, Ling-Shan, Hansra, Gurdip, Robinson, Phillip J., Graham, Mark E.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.44 MB

english, 2010

54

Assessment of Buffer Systems for Harvesting Proteins from Tissue Interstitial Fluid for Proteomic Analysis

Teng, Pang-ning, Rungruang, Bunja J., Hood, Brian L., Sun, Mai, Flint, Melanie S., Bateman, Nicholas W., Dhir, Rajiv, Bhargava, Rohit, Richard, Scott D., Edwards, Robert P., Conrads, Thomas P.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.65 MB

english, 2010

55

Quantification of β-Catenin Signaling Components in Colon Cancer Cell Lines, Tissue Sections, and Microdissected Tumor Cells using Reaction Monitoring Mass Spectrometry

Chen, Yi, Gruidl, Mike, Remily-Wood, Elizabeth, Liu, Richard Z., Eschrich, Steven, Lloyd, Mark, Nasir, Aejaz, Bui, Marilyn M., Huang, Emina, Shibata, David, Yeatman, Timothy, Koomen, John M.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.97 MB

english, 2010