Volume 9; Issue 6

Journal of Proteome Research

Volume 9; Issue 6

1

Discovery of a Novel Unfolded Protein Response Phenotype of Cancer Stem/Progenitor Cells from the Bone Marrow of Breast Cancer Patients

Bartkowiak, Kai, Effenberger, Katharina E., Harder, Sönke, Andreas, Antje, Buck, Friedrich, Peter-Katalinic, Jasna, Pantel, Klaus, Brandt, Burkhard H.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.76 MB

english, 2010

2

Urinary Metabolic Phenotyping Differentiates Children with Autism from Their Unaffected Siblings and Age-Matched Controls

Yap, Ivan K. S., Angley, Manya, Veselkov, Kirill A., Holmes, Elaine, Lindon, John C., Nicholson, Jeremy K.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.10 MB

english, 2010

3

Motif Analysis of Phosphosites Discloses a Potential Prominent Role of the Golgi Casein Kinase (GCK) in the Generation of Human Plasma Phospho-Proteome

Salvi, Mauro, Cesaro, Luca, Tibaldi, Elena, Pinna, Lorenzo A.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 751 KB

english, 2010

4

Analysis of Secreted Proteins for the Study of Bladder Cancer Cell Aggressiveness

Makridakis, Manousos, Roubelakis, Maria G., Bitsika, Vasiliki, Dimuccio, Veronica, Samiotaki, Martina, Kossida, Sophia, Panayotou, George, Coleman, Jonathan, Candiano, Giovanni, Anagnou, Nikolaos P.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.16 MB

english, 2010

5

Secretome Analysis of Human BMSCs and Identification of SMOC1 as an Important ECM Protein in Osteoblast Differentiation

Choi, Young-Ae, Lim, Jiwon, Kim, Kyung Min, Acharya, Bodhraj, Cho, Je-Yoel, Bae, Yong-Chul, Shin, Hong-In, Kim, Shin-Yoon, Park, Eui Kyun

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 435 KB

english, 2010

6

The Mucilage Proteome of Maize ( Zea mays L.) Primary Roots

Ma, Wei, Muthreich, Nils, Liao, Chengsong, Franz-Wachtel, Mirita, Schütz, Wolfgang, Zhang, Fusuo, Hochholdinger, Frank, Li, Chunjian

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 303 KB

english, 2010

7

The Profile of Mitochondrial Proteins and Their Phosphorylation Signaling Network in INS-1 β Cells

Cui, Ziyou, Hou, Junjie, Chen, Xiulan, Li, Jing, Xie, Zhensheng, Xue, Peng, Cai, Tanxi, Wu, Peng, Xu, Tao, Yang, Fuquan

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 114 KB

english, 2010

8

Metabolomic Patterns in Glioblastoma and Changes during Radiotherapy: A Clinical Microdialysis Study

Wibom, Carl, Surowiec, Izabella, Mörén, Lina, Bergström, Per, Johansson, Mikael, Antti, Henrik, Bergenheim, A. Tommy

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.25 MB

english, 2010

9

Proteome Reference Map and Comparative Proteomic Analysis between a Wild Type Clostridium acetobutylicum DSM 1731 and its Mutant with Enhanced Butanol Tolerance and Butanol Yield

Mao, Shaoming, Luo, Yuanming, Zhang, Tianrui, Li, Jinshan, Bao, Guanhui, Zhu, Yan, Chen, Zugen, Zhang, Yanping, Li, Yin, Ma, Yanhe

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.69 MB

english, 2010

10

1 H Nuclear Magnetic Resonance Metabolomics Analysis Identifies Novel Urinary Biomarkers for Lung Function

McClay, Joseph L., Adkins, Daniel E., Isern, Nancy G., O’Connell, Thomas M., Wooten, Jan B., Zedler, Barbara K., Dasika, Madhukar S., Webb, Bradley Todd, Webb-Robertson, Bobbie-Jo, Pounds, Joel G., Mu

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 149 KB

english, 2010

11

Brain Phosphoproteome Obtained by a FASP-Based Method Reveals Plasma Membrane Protein Topology

Wiśniewski, Jacek R., Nagaraj, Nagarjuna, Zougman, Alexandre, Gnad, Florian, Mann, Matthias

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.64 MB

english, 2010

12

Effects of Mercury on Dictyostelium discoideum : Proteomics Reveals the Molecular Mechanisms of Physiological Adaptation and Toxicity

Marsano, Francesco, Boatti, Lara, Ranzato, Elia, Cavaletto, Maria, Magnelli, Valeria, Dondero, Francesco, Viarengo, Aldo

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.53 MB

english, 2010

13

The Proteome of Liquid Sclerotial Exudates from Sclerotinia sclerotiorum

Liang, Yue, Strelkov, Stephen E., Kav, Nat N. V.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.07 MB

english, 2010

14

Hypoxia Conditions Differentially Modulate Human Normal and Osteoarthritic Chondrocyte Proteomes

Ruiz-Romero, Cristina, Calamia, Valentina, Rocha, Beatriz, Mateos, Jesús, Fernández-Puente, Patricia, Blanco, Francisco J.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.96 MB

english, 2010

15

Identification of p65-Associated Phosphoproteins by Mass Spectrometry after On-Plate Phosphopeptide Enrichment Using Polymer-oxotitanium Films

Wang, Wei-Han, Palumbo, Amanda M., Tan, Yu-Jing, Reid, Gavin E., Tepe, Jetze J., Bruening, Merlin L.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.60 MB

english, 2010

16

Proteomic Analyses of Caenorhabditis elegans Dauer Larvae and Long-Lived daf-2 Mutants Implicates a Shared Detoxification System in Longevity Assurance

Jones, Laura M., Staffa, Katharina, Perally, Samïrah, LaCourse, E. James, Brophy, Peter M., Hamilton, Jo V.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 334 KB

english, 2010

17

Proteomic and Functional Characterization of a Chlamydomonas reinhardtii Mutant Lacking the Mitochondrial Alternative Oxidase 1

Mathy, Grégory, Cardol, Pierre, Dinant, Monique, Blomme, Arnaud, Gérin, Stéphanie, Cloes, Marie, Ghysels, Bart, DePauw, Edwin, Leprince, Pierre, Remacle, Claire, Sluse-Goffart, Claudine, Franck, Fa

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.34 MB

english, 2010

18

Salt Stress Induced Differential Proteome and Metabolome Response in the Shoots of Aeluropus lagopoides (Poaceae), a Halophyte C 4 Plant

Sobhanian, Hamid, Motamed, Nasrin, Jazii, Ferdous Rastgar, Nakamura, Takuji, Komatsu, Setsuko

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.58 MB

english, 2010

19

Mass Spectrometry Analysis of the Post-Translational Modifications of α-Enolase from Pancreatic Ductal Adenocarcinoma Cells

Zhou, Weidong, Capello, Michela, Fredolini, Claudia, Piemonti, Lorenzo, Liotta, Lance A., Novelli, Francesco, Petricoin, Emanuel F.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 4.74 MB

english, 2010

20

Top-Down and Bottom-Up Proteomics of SDS-Containing Solutions Following Mass-Based Separation

Botelho, Diane, Wall, Mark J., Vieira, Douglas B., Fitzsimmons, Shayla, Liu, Fang, Doucette, Alan

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.21 MB

english, 2010

21

Extraction and Proteome Analysis of Starch Granule-Associated Proteins in Mature Wheat Kernel ( Triticum aestivum L.)

Bancel, Emmanuelle, Rogniaux, Hélène, Debiton, Clément, Chambon, Christophe, Branlard, Gérard

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.19 MB

english, 2010

22

Mutation of nfxB Causes Global Changes in the Physiology and Metabolism of Pseudomonas aeruginosa

Stickland, Hannah G., Davenport, Peter W., Lilley, Kathryn S., Griffin, Julian L., Welch, Martin

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.46 MB

english, 2010

23

Mass Spectrometry Following Mild Enzymatic Digestion Reveals Phosphorylation of Recombinant Proteins in Escherichia coli Through Mechanisms Involving Direct Nucleotide Binding

She, Yi-Min, Xu, Xiaohui, Yakunin, Alexander F., Dhe-Paganon, Sirano, Donald, Lynda J., Standing, Kenneth G., Lee, Daniel C., Jia, Zongchao, Cyr, Terry D.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.09 MB

english, 2010

24

Global Analysis of Quorum Sensing Targets in the Intracellular Pathogen Brucella melitensis 16 M

Uzureau, Sophie, Lemaire, Julien, Delaive, Edouard, Dieu, Marc, Gaigneaux, Anthoula, Raes, Martine, Bolle, Xavier De, Letesson, Jean-Jacques

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 6.37 MB

english, 2010

25

Human Intestinal TFF3 Forms Disulfide-Linked Heteromers with the Mucus-Associated FCGBP Protein and Is Released by Hydrogen Sulfide

Albert, Timo K., Laubinger, Werner, Müller, Stefan, Hanisch, Franz-Georg, Kalinski, Thomas, Meyer, Frank, Hoffmann, Werner

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.42 MB

english, 2010

26

Species Differentiation of Seafood Spoilage and Pathogenic Gram-Negative Bacteria by MALDI-TOF Mass Fingerprinting

Böhme, Karola, Fernández-No, Inmaculada C., Barros-Velázquez, Jorge, Gallardo, José M., Calo-Mata, Pilar, Cañas, Benito

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.35 MB

english, 2010

27

Metabolite Profiles from Dried Biofluid Spots for Metabonomic Studies using UPLC Combined with oaToF-MS

Michopoulos, Filippos, Theodoridis, Georgios, Smith, Christopher J., Wilson, Ian D.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 665 KB

english, 2010

28

De Novo Sequencing of Tryptic Peptides Derived from Deinococcus radiodurans Ribosomal Proteins Using 157 nm Photodissociation MALDI TOF/TOF Mass Spectrometry

Zhang, Liangyi, Reilly, James P.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 293 KB

english, 2010

29

Red pepper as a probe for obesity

Powell, Steven C.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 46 KB

english, 2010

30

A Combined Metabonomic and Transcriptomic Approach to Investigate Metabolism during Development in the Chick Chorioallantoic Membrane

Cavill, Rachel, Sidhu, Jasmin K., Kilarski, Witold, Javerzat, Sophie, Hagedorn, Martin, Ebbels, Timothy, M. D., Bikfalvi, Andreas, Keun, Hector C.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 4.46 MB

english, 2010

31

Comparative Proteome and Phosphoproteome Analyses during Cyprid Development of the Barnacle Balanus ( =Amphibalanus ) amphitrite

Zhang, Yu, Xu, Ying, Arellano, Shawn M., Xiao, Kang, Qian, Pei-Yuan

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.66 MB

english, 2010

32

Identification of Tandem Mass Spectra of Mixtures of Isomeric Peptides

Chen, Xi, Drogaris, Paul, Bern, Marshall

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.94 MB

english, 2010

33

Phosphoproteomic Biomarkers Predicting Histologic Nonalcoholic Steatohepatitis and Fibrosis

Younossi, Zobair M., Baranova, Ancha, Stepanova, Maria, Page, Sandra, Calvert, Valerie S., Afendy, Arian, Goodman, Zachary, Chandhoke, Vikas, Liotta, Lance, Petricoin, Emanuel

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.62 MB

english, 2010

34

Proteomics-Based Biomarkers in Chronic Obstructive Pulmonary Disease

Chen, Hong, Wang, Diane, Bai, Chunxue, Wang, Xiangdong

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.37 MB

english, 2010

35

The Proteome of the Wool Cuticle

Koehn, Henning, Clerens, Stefan, Deb-Choudhury, Santanu, Morton, James D., Dyer, Jolon M., Plowman, Jeffrey E.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.96 MB

english, 2010

36

Proteomic Analysis for Antiobesity Potential of Capsaicin on White Adipose Tissue in Rats Fed with a High Fat Diet

Joo, Jeong In, Kim, Dong Hyun, Choi, Jung-Won, Yun, Jong Won

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 440 KB

english, 2010

37

Quantitative Proteomics Analysis Reveals Molecular Networks Regulated by Epidermal Growth Factor Receptor Level in Head and Neck Cancer

Yang, Wei, Cai, Quan, Lui, Vivian W. Y., Everley, Patrick A., Kim, Jayoung, Bhola, Neil, Quesnelle, Kelly M., Zetter, Bruce R., Steen, Hanno, Freeman, Michael R., Grandis, Jennifer R.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.65 MB

english, 2010

38

Quantitative Phosphoproteomic Analysis of T Cell Receptor Signaling in Diabetes Prone and Resistant Mice

Iwai, Leo K., Benoist, Christophe, Mathis, Diane, White, Forest M

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.96 MB

english, 2010

39

Glycomic Analysis of Sialic Acid Linkages in Glycans Derived from Blood Serum Glycoproteins

Alley, William R., Novotny, Milos V.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.43 MB

english, 2010

40

Glycosylation Signatures in Drosophila : Fishing with Lectins

Vandenborre, Gianni, Van Damme, Els J. M., Ghesquière, Bart, Menschaert, Gerben, Hamshou, Mohamad, Rao, Rameshwaram Nagender, Gevaert, Kris, Smagghe, Guy

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 643 KB

english, 2010

41

A Proteomics-Based Translational Approach Reveals an Antifolate Resistance Inherent in Human Plasma Derived from Blood Donation

Chin, Li-Te, Huang, Pei-Ru, Hu, Kuang-Yu, Huang, Nai-Kuei, Chiu, Cheng-Di, Hour, Ai-Ling, Shui, Hao-Ai, Chu, Chi-Hong, Chen, Han-Min

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.24 MB

english, 2010

42

Combination of Improved 18 O Incorporation and Multiple Reaction Monitoring: A Universal Strategy for Absolute Quantitative Verification of Serum Candidate Biomarkers of Liver Cancer

Zhao, Yan, Jia, Wei, Sun, Wei, Jin, Wenhai, Guo, Lihai, Wei, Junying, Ying, Wantao, Zhang, Yangjun, Xie, Yongming, Jiang, Ying, He, Fuchu, Qian, Xiaohong

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.14 MB

english, 2010

43

Quantitative iTRAQ Secretome Analysis of Cellulolytic Thermobifida fusca

Adav, Sunil S., Ng, Chee Sheng, Arulmani, Manavalan, Sze, Siu Kwan

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.32 MB

english, 2010

44

Protein−Protein Recognition Control by Modulating Electrostatic Interactions

Han, Song, Yin, Shijin, Yi, Hong, Mouhat, Stéphanie, Qiu, Su, Cao, Zhijian, Sabatier, Jean-Marc, Wu, Yingliang, Li, Wenxin

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.78 MB

english, 2010

45

Sequencing and Quantifying IgG Fragments and Antigen-Binding Regions by Mass Spectrometry

de Costa, Dominique, Broodman, Ingrid, VanDuijn, Martijn M., Stingl, Christoph, Dekker, Lennard J. M., Burgers, Peter C., Hoogsteden, Henk C., Sillevis Smitt, Peter A. E., van Klaveren, Rob J., Luider

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.98 MB

english, 2010

46

Activation of Aortic Endothelial Cells by Oxidized Phospholipids: A Phosphoproteomic Analysis

Zimman, Alejandro, Chen, Sharon S., Komisopoulou, Evangelia, Titz, Bjoern, Martínez-Pinna, Roxana, Kafi, Aarya, Berliner, Judith A., Graeber, Thomas G.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.39 MB

english, 2010

47

Noninvasive Urinary Metabonomic Diagnosis of Human Bladder Cancer

Pasikanti, Kishore Kumar, Esuvaranathan, Kesavan, Ho, Paul C., Mahendran, Ratha, Kamaraj, Revathi, Wu, Qing Hui, Chiong, Edmund, Chan, Eric Chun Yong

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 990 KB

english, 2010

48

Gas-Phase Rearrangements Do Not Affect Site Localization Reliability in Phosphoproteomics Data Sets

Aguiar, Mike, Haas, Wilhelm, Beausoleil, Sean A., Rush, John, Gygi, Steven P.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.04 MB

english, 2010

49

ProteomeCommons.org Collaborative Annotation and Project Management Resource Integrated With the Tranche Repository

Hill, James A., Smith, Bryan E., Papoulias, Panagiotis G., Andrews, Philip C.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 62 KB

english, 2010

50

Proteomic Analysis of Quorum Sensing-Dependent Proteins in Burkholderia glumae

Goo, Eunhye, Kang, Yongsung, Kim, Hongsup, Hwang, Ingyu

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 6.28 MB

english, 2010

51

Lectin-Based Enrichment Method for Glycoproteomics Using Hollow Fiber Flow Field-Flow Fractionation: Application to Streptococcus pyogenes

Kang, Dukjin, Ji, Eun Sun, Moon, Myeong Hee, Yoo, Jong Shin

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.71 MB

english, 2010

52

Combined Comparative and Chemical Proteomics on the Mechanisms of levo -Tetrahydropalmatine-Induced Antinociception in the Formalin Test

Wang, Chen, Zhou, Jiangrui, Wang, Shuowen, Ye, Mingliang, Jiang, Chunlei, Fan, Guorong, Zou, Hanfa

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.38 MB

english, 2010

53

In Depth Exploration of the Hemolymph of Limulus polyphemus via Combinatorial Peptide Ligand Libraries

D’Amato, Alfonsina, Cereda, Angelo, Bachi, Angela, Pierce, James C., Righetti, Pier Giorgio

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 4.18 MB

english, 2010