Volume 9; Issue 10

Journal of Proteome Research

Volume 9; Issue 10

1

Comparative Proteomic Analysis of Triclabendazole Response in the Liver Fluke Fasciola hepatica

Chemale, Gustavo, Perally, Samirah, LaCourse, E. James, Prescott, Mark C., Jones, Laura M., Ward, Deborah, Meaney, Myles, Hoey, Elizabeth, Brennan, Gerard P., Fairweather, Ian

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 4.81 MB

english, 2010

2

Depletion of Abundant Plasma Proteins and Limitations of Plasma Proteomics

Tu, Chengjian, Rudnick, Paul A., Martinez, Misti Y., Cheek, Kristin L., Stein, Stephen E., Slebos, Robbert J. C., Liebler, Daniel C.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.43 MB

english, 2010

3

Transgelin Promotes Migration and Invasion of Cancer Stem Cells

Lee, Eun-Kyung, Han, Gi-Yeon, Park, Hye Won, Song, Yeo-Ju, Kim, Chan-Wha

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 412 KB

english, 2010

4

Ultra-High Performance Liquid Chromatography−Mass Spectrometry for the Fast Profiling of Histone Post-Translational Modifications

Contrepois, Kévin, Ezan, Eric, Mann, Carl, Fenaille, François

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.73 MB

english, 2010

5

An Analysis of an Interactome for Apoptosis Factor, Ei24/PIG8, Using the Inducible Expression System and Shotgun Proteomics

Bahk, Young Yil, Lee, Jaehoon, Cho, Ick-Hyun, Lee, Han-Woong

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 4.78 MB

english, 2010

6

The Ubiquitin−Proteasome Pathway Is Important for Dengue Virus Infection in Primary Human Endothelial Cells

Kanlaya, Rattiyaporn, Pattanakitsakul, Sa-nga, Sinchaikul, Supachok, Chen, Shui-Tein, Thongboonkerd, Visith

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.84 MB

english, 2010

7

Proteomics in Nutrition: Status Quo and Outlook for Biomarkers and Bioactives

Kussmann, Martin, Panchaud, Alexandre, Affolter, Michael

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 349 KB

english, 2010

8

Defining Central Themes in Breast Cancer Biology by Differential Proteomics: Conserved Regulation of Cell Spreading and Focal Adhesion Kinase

Bateman, Nicholas W., Sun, Mai, Hood, Brian L., Flint, Melanie S., Conrads, Thomas P.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 525 KB

english, 2010

9

A Peptidomics Strategy for Discovering Endogenous Bioactive Peptides

Sasaki, Kazuki, Takahashi, Noriyuki, Satoh, Mitsuo, Yamasaki, Motoo, Minamino, Naoto

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 523 KB

english, 2010

10

Dietary Modulation of Gut Functional Ecology Studied by Fecal Metabonomics

Martin, Francois-Pierre J., Sprenger, Norbert, Montoliu, Ivan, Rezzi, Serge, Kochhar, Sunil, Nicholson, Jeremy K.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.90 MB

english, 2010

11

The Bait Compatibility Index: Computational Bait Selection for Interaction Proteomics Experiments

Saha, Sudipto, Kaur, Parminder, Ewing, Rob M.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.45 MB

english, 2010

12

Large-Scale Prediction of Human Protein−Protein Interactions from Amino Acid Sequence Based on Latent Topic Features

Pan, Xiao-Yong, Zhang, Ya-Nan, Shen, Hong-Bin

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.40 MB

english, 2010

13

Comprehensive Appraisal of the Extracellular Proteins from a Monoderm Bacterium: Theoretical and Empirical Exoproteomes of Listeria monocytogenes EGD-e by Secretomics

Desvaux, Mickaël, Dumas, Emilie, Chafsey, Ingrid, Chambon, Christophe, Hébraud, Michel

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.81 MB

english, 2010

14

Proteomic Profile Regulated by the Anticancer Peptide CIGB-300 in Non-Small Cell Lung Cancer (NSCLC) Cells

Rodríguez-Ulloa, Arielis, Ramos, Yassel, Gil, Jeovanis, Perera, Yasser, Castellanos-Serra, Lila, García, Yairet, Betancourt, Lázaro, Besada, Vladimir, González, Luis J., Fernández-de-Cossio, Jorg

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.73 MB

english, 2010

15

Proteomic Characterization of Human Plasma High Density Lipoprotein Fractionated by Gel Filtration Chromatography

Gordon, Scott M., Deng, Jingyuan, Lu, L. Jason, Davidson, W. Sean

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.06 MB

english, 2010

16

Proteomic Analysis of Proteins Selectively Associated with Hydroxyapatite, Brushite, and Uric Acid Crystals Precipitated from Human Urine

Thurgood, Lauren A., Ryall, Rosemary L.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.06 MB

english, 2010

17

Profiling the Outer Membrane Proteome during Growth and Development of the Social Bacterium Myxococcus xanthus by Selective Biotinylation and Analyses of Outer Membrane Vesicles

Kahnt, Jörg, Aguiluz, Kryssia, Koch, Jürgen, Treuner-Lange, Anke, Konovalova, Anna, Huntley, Stuart, Hoppert, Michael, Søgaard-Andersen, Lotte, Hedderich, Reiner

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.04 MB

english, 2010

18

Identification of Novel Human Adipocyte Secreted Proteins by Using SGBS Cells

Rosenow, Anja, Arrey, Tabiwang N., Bouwman, Freek G., Noben, Jean-Paul, Wabitsch, Martin, Mariman, Edwin C.M., Karas, Michael, Renes, Johan

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.57 MB

english, 2010

19

Les Maîtres de l’Orge: The Proteome Content of Your Beer Mug

Fasoli, Elisa, Aldini, Giancarlo, Regazzoni, Luca, Kravchuk, Alexander V., Citterio, Attilio, Righetti, Pier Giorgio

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.66 MB

english, 2010

20

Efficient Marginalization to Compute Protein Posterior Probabilities from Shotgun Mass Spectrometry Data

Serang, Oliver, MacCoss, Michael J., Noble, William Stafford

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.51 MB

english, 2010

21

Sugar-Mediated Acclimation: The Importance of Sucrose Metabolism in Meristems

Carpentier, Sebastien Christian, Vertommen, Annelies, Swennen, Rony, Witters, Erwin, Fortes, Claudia, Souza, Manoel T., Panis, Bart

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.52 MB

english, 2010

22

Stathmin, a New Target of PRL-3 Identified by Proteomic Methods, Plays a Key Role in Progression and Metastasis of Colorectal Cancer

Zheng, Ping, Liu, Yong-Xia, Chen, Lin, Liu, Xun-Hua, Xiao, Zheng-Quan, Zhao, Liang, Li, Guang-Qiu, Zhou, Jun, Ding, Yan-Qing, Li, Jian-Ming

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 4.38 MB

english, 2010

23

Preservation of Field Samples for Enzymatic and Proteomic Characterization: Analysis of Proteins from the Trophallactic Fluid of Hornets and Yellowjackets

Roskens, Violet A., Carpenter, James M., Pickett, Kurt M., Ballif, Bryan A.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.96 MB

english, 2010

24

Analysis of Low Abundance Membrane-Associated Proteins from Rat Pancreatic Zymogen Granules

Borta, Heike, Aroso, Miguel, Rinn, Cornelia, Gomez-Lazaro, Maria, Vitorino, Rui, Zeuschner, Dagmar, Grabenbauer, Markus, Amado, Francisco, Schrader, Michael

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 4.42 MB

english, 2010

25

Temporal Profiling of the Secretome during Adipogenesis in Humans

Zhong, Jun, Krawczyk, Sarah A., Chaerkady, Raghothama, Huang, Hailiang, Goel, Renu, Bader, Joel S., Wong, G. William, Corkey, Barbara E., Pandey, Akhilesh

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.27 MB

english, 2010

26

Galectin-3 Is a Candidate Biomarker for Amyotrophic Lateral Sclerosis: Discovery by a Proteomics Approach

Zhou, Jian-Ying, Afjehi-Sadat, Leila, Asress, Seneshaw, Duong, Duc M., Cudkowicz, Merit, Glass, Jonathan D., Peng, Junmin

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.49 MB

english, 2010

27

Quantitative Proteomics Using SILAC Coupled to LC−MS/MS Reveals Changes in the Nucleolar Proteome in Influenza A Virus-Infected Cells

Emmott, Edward, Wise, Helen, Loucaides, Eva M., Matthews, David A., Digard, Paul, Hiscox, Julian A.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.32 MB

english, 2010

28

Identification of Novel Proteins Involved in Plant Cell-Wall Synthesis Based on Protein−Protein Interaction Data

Zhou, Chan, Yin, Yanbin, Dam, Phuongan, Xu, Ying

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 912 KB

english, 2010

29

Mass Spectrometric Identification of Key Proteolytic Cleavage Sites in Statherin Affecting Mineral Homeostasis and Bacterial Binding Domains

Helmerhorst, Eva J., Traboulsi, Georges, Salih, Erdjan, Oppenheim, Frank G.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.98 MB

english, 2010

30

Cysteinyl Peptide Capture for Shotgun Proteomics: Global Assessment of Chemoselective Fractionation

Lin, De, Li, Jing, Slebos, Robbert J. C., Liebler, Daniel C.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.86 MB

english, 2010

31

Potential Biomarkers for Turner in Maternal Plasma: Possibility for Noninvasive Prenatal Diagnosis

Kolialexi, Aggeliki, Anagnostopoulos, Athanasios K., Papantoniou, Nikos, Vougas, Konstantinos, Antsaklis, Aris, Fountoulakis, Michael, Mavrou, Ariadni, Tsangaris, George Th.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.01 MB

english, 2010

32

Proteome Analysis of Rat Bone Marrow Mesenchymal Stem Cell Differentiation

Çelebi, Betül, Elçin, A. Eser, Elçin, Y. Murat

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.93 MB

english, 2010

33

NMR Metabolomic Profiling Reveals New Roles of SUMOylation in DNA Damage Response

Cano, Kristin E., Li, Yi-Jia, Chen, Yuan

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.92 MB

english, 2010

34

Training, Selection, and Robust Calibration of Retention Time Models for Targeted Proteomics

Moruz, Luminita, Tomazela, Daniela, Käll, Lukas

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.24 MB

english, 2010

35

Trichohyalin is a Potential Major Autoantigen in Human Alopecia Areata

Leung, Man Ching, Sutton, Chris W., Fenton, David A., Tobin, Desmond J.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 4.03 MB

english, 2010

36

Quantitative Analysis of Protein Complex Constituents and Their Phosphorylation States on a LTQ-Orbitrap Instrument

Przybylski, Cédric, Jünger, Martin A., Aubertin, Johannes, Radvanyi, François, Aebersold, Ruedi, Pflieger, Delphine

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.85 MB

english, 2010

37

Common threads in breast cancer proteomes

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 260 KB

english, 2010

38

Mass Spectrometry-Based Neuropeptidomics of Secretory Vesicles from Human Adrenal Medullary Pheochromocytoma Reveals Novel Peptide Products of Prohormone Processing

Gupta, Nitin, Bark, Steven J., Lu, Weiya D., Taupenot, Laurent, O’Connor, Daniel T., Pevzner, Pavel, Hook, Vivian

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.68 MB

english, 2010

39

A Quantitative Study of the Effects of Chaotropic Agents, Surfactants, and Solvents on the Digestion Efficiency of Human Plasma Proteins by Trypsin

Proc, Jennifer L., Kuzyk, Michael A., Hardie, Darryl B., Yang, Juncong, Smith, Derek S., Jackson, Angela M., Parker, Carol E., Borchers, Christoph H.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 7.22 MB

english, 2010

40

Integrated Proteomic and Cytological Study of Rice Endosperms at the Storage Phase

Xu, Sheng Bao, Yu, Hua Tao, Yan, Long Feng, Wang, Tai

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.89 MB

english, 2010

41

Proteomic and Bioinformatic Analysis of the Root-Knot Nematode Meloidogyne hapla : The Basis for Plant Parasitism

Mbeunkui, Flaubert, Scholl, Elizabeth H., Opperman, Charles H., Goshe, Michael B., Bird, David McK.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.55 MB

english, 2010

42

Genomics and Peptidomics of Neuropeptides and Protein Hormones Present in the Parasitic Wasp Nasonia vitripennis ∥

Hauser, Frank, Neupert, Susanne, Williamson, Michael, Predel, Reinhard, Tanaka, Yoshiaki, Grimmelikhuijzen, Cornelis J. P.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 5.87 MB

english, 2010

43

Alternative Experimental Design with an Applied Normalization Scheme Can Improve Statistical Power in 2D-DIGE Experiments

Engelen, Kristof, Sifrim, Alejandro, Van de Plas, Babs, Laukens, Kris, Arckens, Lutgarde, Marchal, Kathleen

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.26 MB

english, 2010

44

Identification of Carbonic Anhydrase I Immunodominant Epitopes Recognized by Specific Autoantibodies Which Indicate an Improved Prognosis in Patients with Malignancy after Autologous Stem Cell Transplantation

Skultety, Ludovit, Jankovicova, Barbora, Svobodova, Zuzana, Mader, Pavel, Rezacova, Pavlina, Dubrovcakova, Maria, Lakota, Jan, Bilkova, Zuzana

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 4.00 MB

english, 2010

45

Proteomics of Dense Core Secretory Vesicles Reveal Distinct Protein Categories for Secretion of Neuroeffectors for Cell−Cell Communication

Wegrzyn, Jill L., Bark, Steven J., Funkelstein, Lydiane, Mosier, Charles, Yap, Angel, Kazemi-Esfarjani, Parsa, La Spada, Albert R., Sigurdson, Christina, O’Connor, Daniel T., Hook, Vivian

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 16.01 MB

english, 2010

46

Improving Mass Defect Filters for Human Proteins

Toumi, Melinda L., Desaire, Heather

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 761 KB

english, 2010

47

Four-Dimensional Orthogonal Electrophoresis System for Screening Protein Complexes and Protein−Protein Interactions Combined with Mass Spectrometry

Wang, Xiaodong, Chen, Guoqiang, Liu, Hui, Zhao, Zhiyun, Li, Zhili

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 3.22 MB

english, 2010

48

Lectin Magnetic Bead Array for Biomarker Discovery

Loo, Dorothy, Jones, Alun, Hill, Michelle M.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.35 MB

english, 2010

49

Identification of N-Glycosylation Changes in the CSF and Serum in Patients with Schizophrenia

Stanta, Johannes L., Saldova, Radka, Struwe, Weston B., Byrne, Jennifer C., Leweke, F. Markus, Rothermund, Matthius, Rahmoune, Hassan, Levin, Yishai, Guest, Paul C., Bahn, Sabine, Rudd, Pauline M.

Journal:

Journal of Proteome Research

Année:

2010

Fichier:

PDF, 51 KB

2010

50

A High-Throughput O -Glycopeptide Discovery Platform for Seromic Profiling

Blixt, Ola, Cló, Emiliano, Nudelman, Aaron S., Sørensen, Kasper Kildegaard, Clausen, Thomas, Wandall, Hans H., Livingston, Philip O., Clausen, Henrik, Jensen, Knud J.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 5.77 MB

english, 2010

51

Novel Insights into the Global Proteome Responses of Insulin-Producing INS-1E Cells To Different Degrees of Endoplasmic Reticulum Stress

D’Hertog, Wannes, Maris, Michael, Ferreira, Gabriela B., Verdrengh, Eefje, Lage, Kasper, Hansen, Daniel A., Cardozo, Alessandra K., Workman, Christopher T., Moreau, Yves, Eizirik, Decio L., Waelkens,

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.79 MB

english, 2010

52

Human Serum Processing and Analysis Methods for Rapid and Reproducible N-Glycan Mass Profiling

Kronewitter, Scott R., de Leoz, Maria Lorna A., Peacock, Kyle S., McBride, Kelly R., An, Hyun Joo, Miyamoto, Suzanne, Leiserowitz, Gary S., Lebrilla, Carlito B.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.51 MB

english, 2010

53

Proteomic Analysis of Protein−Protein Interactions within the Cysteine Sulfinate Desulfinase Fe−S Cluster Biogenesis System

Bolstad, Heather M., Botelho, Danielle J., Wood, Matthew J.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.76 MB

english, 2010

54

Quantitative Proteomics Reveals a “Poised Quiescence” Cellular State after Triggering the DNA Replication Origin Activation Checkpoint

Mulvey, Claire, Tudzarova, Slavica, Crawford, Mark, Williams, Gareth H., Stoeber, Kai, Godovac-Zimmermann, Jasminka

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 4.71 MB

english, 2010

55

Serum Metabolic Signature of Minimal Hepatic Encephalopathy by 1 H-Nuclear Magnetic Resonance

Jiménez, Beatriz, Montoliu, Carmina, MacIntyre, David A., Serra, Miguel A., Wassel, Abdallah, Jover, María, Romero-Gomez, Manuel, Rodrigo, Jose M., Pineda-Lucena, Antonio, Felipo, Vicente

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.24 MB

english, 2010

56

Proteomic and Phosphoproteomic Analysis at Diapause Initiation in the Cotton Bollworm, Helicoverpa armigera

Lu, Yu-Xuan, Xu, Wei-Hua

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.66 MB

english, 2010

57

Organellar Protein Complexes of Caco-2 Human Cells Analyzed by Two-Dimensional Blue Native/SDS-PAGE and Mass Spectrometry

Lasserre, Jean-Paul, Sylvius, Loïk, Joubert-Caron, Raymonde, Caron, Michel, Hardouin, Julie

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.08 MB

english, 2010

58

Proteomic Analysis of PAXgene-Fixed Tissues

Ergin, Bilge, Meding, Stephan, Langer, Rupert, Kap, Marcel, Viertler, Christian, Schott, Christina, Ferch, Uta, Riegman, Peter, Zatloukal, Kurt, Walch, Axel, Becker, Karl-Friedrich

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 2.84 MB

english, 2010

59

Precursor Charge State Prediction for Electron Transfer Dissociation Tandem Mass Spectra

Sharma, Vagisha, Eng, Jimmy K., Feldman, Sergey, von Haller, Priska D., MacCoss, Michael J., Noble, William S.

Journal:

Journal of Proteome Research

Année:

2010

Langue:

english

Fichier:

PDF, 1.04 MB

english, 2010