Volume 8; Issue 5

Journal of Proteome Research

Volume 8; Issue 5

1

Crotalid Snake Venom Subproteomes Unraveled by the Antiophidic Protein DM43

Rocha, Surza L. G., Neves-Ferreira, Ana G. C., Trugilho, Monique R. O., Chapeaurouge, Alex, León, Ileana R., Valente, Richard H., Domont, Gilberto B., Perales, Jonas

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 3.00 MB

english, 2009

2

Statistical Design of Quantitative Mass Spectrometry-Based Proteomic Experiments

Oberg, Ann L., Vitek, Olga

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 585 KB

english, 2009

3

Comparative Proteomic Profiling of Membrane Proteins in Rat Cerebellum, Spinal Cord, and Sciatic Nerve

Lu, Aiping, Wiśniewski, Jacek R., Mann, Matthias

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.09 MB

english, 2009

4

Identification of Serine/Threonine Kinase Substrates in the Human Pathogen Group B Streptococcus

Silvestroni, Aurelio, Jewell, Kelsea A., Lin, Wan-Jung, Connelly, James E., Ivancic, Melanie M., Tao, W. Andy, Rajagopal, Lakshmi

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 3.10 MB

english, 2009

5

Alterations in Actin Cytoskeletal Assembly and Junctional Protein Complexes in Human Endothelial Cells Induced by Dengue Virus Infection and Mimicry of Leukocyte Transendothelial Migration

Kanlaya, Rattiyaporn, Pattanakitsakul, Sa-nga, Sinchaikul, Supachok, Chen, Shui-Tein, Thongboonkerd, Visith

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 3.59 MB

english, 2009

6

Application of Ultra Performance Liquid Chromatography−Mass Spectrometry to Profiling Rat and Dog Bile

Plumb, Robert S., Rainville, Paul D., Potts, Warren B., Johnson, Kelly A., Gika, Eleni, Wilson, Ian D.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.23 MB

english, 2009

7

Technical and Biological Issues Relevant to Cell Typing with Aptamers

Li, Na, Ebright, Jessica N., Stovall, Gwendolyn M., Chen, Xi, Nguyen, Hong Hanh, Singh, Amrita, Syrett, Angel, Ellington, Andrew D.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 4.13 MB

english, 2009

8

A Simple Procedure for Effective Quenching of Trypsin Activity and Prevention of 18 O-Labeling Back-Exchange

Petritis, Brianne O., Qian, Wei-Jun, Camp, David G., Smith, Richard D.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 523 KB

english, 2009

9

2-DE and LC-MS/MS for a Comparative Proteomic Analysis of BALf from Subjects with Different Subsets of Inflammatory Myopathies

Passadore, Ileana, Iadarola, Paolo, Di Poto, Cristina, Giuliano, Serena, Montecucco, Carlomaurizio, Cavagna, Lorenzo, Bonino, Claudia, Meloni, Federica, Fietta, Anna Maria, Lisa, Antonella, Salvini, R

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 987 KB

english, 2009

10

Cerebrospinal Fluid Proteomics Reveals Potential Pathogenic Changes in the Brains of SIV-Infected Monkeys

Pendyala, Gurudutt, Trauger, Sunia A., Kalisiak, Ewa, Ellis, Ronald J., Siuzdak, Gary, Fox, Howard S.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.84 MB

english, 2009

11

Metabolic Profiling Strategy of Caenorhabditis elegans by Whole-Organism Nuclear Magnetic Resonance

Blaise, Benjamin J., Giacomotto, Jean, Triba, Mohamed N., Toulhoat, Pierre, Piotto, Martial, Emsley, Lyndon, Ségalat, Laurent, Dumas, Marc-Emmanuel, Elena, Bénédicte

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 4.43 MB

english, 2009

12

A Carboxy-Terminal Affinity Tag for the Purification and Mass Spectrometric Characterization of Integral Membrane Proteins

Wong, Julie P., Reboul, Emmanuelle, Molday, Robert S., Kast, Juergen

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 3.35 MB

english, 2009

13

Tissue Specific Control of the Maize ( Zea mays L.) Embryo, Cortical Parenchyma, and Stele Proteomes by RUM1 Which Regulates Seminal and Lateral Root Initiation

Saleem, Muhammad, Lamkemeyer, Tobias, Schützenmeister, André, Fladerer, Claudia, Piepho, Hans-Peter, Nordheim, Alfred, Hochholdinger, Frank

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.85 MB

english, 2009

14

Oxidative Damage of Mitochondrial Proteins Contributes to Fruit Senescence: A Redox Proteomics Analysis

Qin, Guozheng, Meng, Xianghong, Wang, Qing, Tian, Shiping

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.37 MB

english, 2009

15

Does the Different Proteomic Profile Found in Apical and Basal Leaves of Spinach Reveal a Strategy of This Plant toward Cadmium Pollution Response?

Fagioni, Marco, Zolla, Lello

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.54 MB

english, 2009

16

Global Protein-Level Responses of Halobacterium salinarum NRC-1 to Prolonged Changes in External Sodium Chloride Concentrations

Leuko, Stefan, Raftery, Mark J., Burns, Brendan P., Walter, Malcolm R., Neilan, Brett A.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 790 KB

english, 2009

17

Top-Down Systems Biology Modeling of Host Metabotype−Microbiome Associations in Obese Rodents

Waldram, Alison, Holmes, Elaine, Wang, Yulan, Rantalainen, Mattias, Wilson, Ian D., Tuohy, Kieran M., McCartney, Anne L., Gibson, Glenn R., Nicholson, Jeremy K.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 3.87 MB

english, 2009

18

Identification and Quantification of Preterm Birth Biomarkers in Human Cervicovaginal Fluid by Liquid Chromatography/Tandem Mass Spectrometry

Shah, Sumit J., Yu, Kenneth H., Sangar, Vineet, Parry, Samuel I., Blair, Ian A.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.53 MB

english, 2009

19

Metabonomics Approach to Understanding Acute and Chronic Stress in Rat Models †

Wang, Xiaoyan, Zhao, Tie, Qiu, Yunping, Su, Mingming, Jiang, Tao, Zhou, Mingmei, Zhao, Aihua, Jia, Wei

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 3.31 MB

english, 2009

20

Platelet Proteome Changes Associated with Diabetes and during Platelet Storage for Transfusion

Springer, David L., Miller, John H., Spinelli, Sherry L., Pasa-Tolic, Ljiljana, Purvine, Samuel O., Daly, Donald S., Zangar, Richard C., Jin, Shuangshuang, Blumberg, Neil, Francis, Charles W., Taubman

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 271 KB

english, 2009

21

Predicting Intensity Ranks of Peptide Fragment Ions

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.26 MB

english, 2009

22

Finding antigen culprits in an occupational disease

Cassiday, Laura

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 916 KB

english, 2009

23

Use of Ligand Based Models for Protein Domains To Predict Novel Molecular Targets and Applications To Triage Affinity Chromatography Data

Bender, Andreas, Mikhailov, Dmitri, Glick, Meir, Scheiber, Josef, Davies, John W., Cleaver, Stephen, Marshall, Stephen, Tallarico, John A., Harrington, Edmund, Cornella-Taracido, Ivan, Jenkins, Jeremy

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.26 MB

english, 2009

24

Systematic LC-MS Analysis of Labile Post-Translational Modifications in Complex Mixtures

Carapito, Christine, Klemm, Clementine, Aebersold, Ruedi, Domon, Bruno

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 976 KB

english, 2009

25

Alterations of Mitochondrial Enzymes Contribute to Cardiac Hypertrophy before Hypertension Development in Spontaneously Hypertensive Rats

Meng, Chao, Jin, Xian, Xia, Li, Shen, Shao-Ming, Wang, Xiao-Ling, Cai, Jun, Chen, Guo-Qiang, Wang, Li-Shun, Fang, Ning-Yuan

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 3.57 MB

english, 2009

26

C-Terminal Hemocyanin from Hemocytes of Penaeus vannamei Interacts with ERK1/2 and Undergoes Serine Phosphorylation

Havanapan, Phattara-orn, Kanlaya, Rattiyaporn, Bourchookarn, Apichai, Krittanai, Chartchai, Thongboonkerd, Visith

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 3.85 MB

english, 2009

27

Metabolic Assessment of Gradual Development of Moderate Experimental Colitis in IL-10 Deficient Mice

Martin, Francois-Pierre J., Rezzi, Serge, Philippe, David, Tornier, Lionel, Messlik, Anja, Hölzlwimmer, Gabriele, Baur, Pia, Quintanilla-Fend, Leticia, Loh, Gunnar, Blaut, Michael, Blum, Stephanie, K

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 4.80 MB

english, 2009

28

Quantitative Proteomic Profiles of Androgen Receptor Signaling in the Liver of Fathead Minnows ( Pimephales promelas )

Martyniuk, Christopher J., Alvarez, Sophie, McClung, Scott, Villeneuve, Daniel L., Ankley, Gerald T., Denslow, Nancy D.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.78 MB

english, 2009

29

Streamline Proteomic Approach for Characterizing Protein−Protein Interaction Network in a RAD52 Protein Complex

Du, Yuchun, Zhou, Jianhong, Fan, Jinjiang, Shen, Zhiyuan, Chen, Xian

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.20 MB

english, 2009

30

Associating Wound-Related Changes in the Apoplast Proteome of Medicago with Early Steps in the ROS Signal-Transduction Pathway

Soares, Nelson C., Francisco, Rita, Vielba, Jesus Maria, Ricardo, Cândido Pinto, Jackson, Phil A.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.47 MB

english, 2009

31

Approaching Solid Tumor Heterogeneity on a Cellular Basis by Tissue Proteomics Using Laser Capture Microdissection and Biological Mass Spectrometry †

Johann, Donald J., Rodriguez-Canales, Jaime, Mukherjee, Sumana, Prieto, DaRue A., Hanson, Jeffrey C., Emmert-Buck, Michael, Blonder, Josip

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 4.44 MB

english, 2009

32

Proteome Analysis of Rat Bone Marrow Mesenchymal Stem Cell Subcultures

Çelebi, Betül, Elçin, Y. Murat

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 3.44 MB

english, 2009

33

Metabolic Enzymes, Antioxidants, and Cytoskeletal Proteins Are Significantly Altered in Vastus Lateralis Muscle of K-Depleted Cadaveric Subjects

Tavichakorntrakool, Ratree, Sriboonlue, Pote, Prasongwattana, Vitoon, Puapairoj, Anucha, Yenchitsomanus, Pa-thai, Sinchaikul, Supachok, Chen, Shui-Tein, Wongkham, Chaisiri, Thongboonkerd, Visith

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.21 MB

english, 2009

34

Expanding the Crustacean Neuropeptidome Using a Multifaceted Mass Spectrometric Approach

Ma, Mingming, Wang, Junhua, Chen, Ruibing, Li, Lingjun

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 6.99 MB

english, 2009

35

Entering a New Era of Rational Biomarker Discovery for Early Detection of Melanoma Metastases: Secretome Analysis of Associated Stroma Cells

Paulitschke, Verena, Kunstfeld, Rainer, Mohr, Thomas, Slany, Astrid, Micksche, Michael, Drach, Johannes, Zielinski, Christoph, Pehamberger, Hubert, Gerner, Christopher

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 3.30 MB

english, 2009

36

Calendar

Journal:

Journal of Proteome Research

Année:

2009

Fichier:

PDF, 822 KB

2009

37

Strategies for a Reliable Biostatistical Analysis of Differentially Expressed Spots from Two-Dimensional Electrophoresis Gels

Eravci, Murat, Mansmann, Ulrich, Broedel, Oliver, Weist, Stephanie, Buetow, Sandra, Wittke, Janosch, Brunkau, Cindy, Hummel, Manuela, Eravci, Selda, Baumgartner, Andreas

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 3.25 MB

english, 2009

38

Multivariate Modeling Strategy for Intercompartmental Analysis of Tissue and Plasma 1 H NMR Spectrotypes

Montoliu, Ivan, Martin, François-Pierre J., Collino, Sebastiano, Rezzi, Serge, Kochhar, Sunil

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.99 MB

english, 2009

39

Serum Proteomic Approach for the Identification of Serum Biomarkers Contributed by Oral Squamous Cell Carcinoma and Host Tissue Microenvironment †

Bijian, Krikor, Mlynarek, Alex M., Balys, Richard L., Jie, Su, Xu, Yingjie, Hier, Michael P., Black, Martin J., Di Falco, Marcos R., LaBoissiere, Sylvie, Alaoui-Jamali, Moulay A.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.11 MB

english, 2009

40

Longitudinal Profiling of Articular Cartilage Degradation in Osteoarthritis by High-Resolution Magic Angle Spinning 1 H NMR Spectroscopy: Experimental Study in the Meniscectomized Guinea Pig Model

Borel, Michele, Pastoureau, Philippe, Papon, Janine, Madelmont, Jean Claude, Moins, Nicole, Maublant, Jean, Miot-Noirault, Elisabeth

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.20 MB

english, 2009

41

Differential Proteomic Analysis of Subfractioned Human Hepatocellular Carcinoma Tissues

Codarin, Erika, Renzone, Giovanni, Poz, Alessandra, Avellini, Claudio, Baccarani, Umberto, Lupo, Francesco, di Maso, Vittorio, Crocè, Saveria Lory, Tiribelli, Claudio, Arena, Simona, Quadrifoglio, Fr

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.86 MB

english, 2009

42

In Praise of Toolmakers

Fenselau, Catherine

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 105 KB

english, 2009

43

A Ranking-Based Scoring Function for Peptide−Spectrum Matches

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.23 MB

english, 2009

44

NCI’s CPTAC: LC/MS/MS reproducibility is possible

Cottingham, Katie

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 38 KB

english, 2009

45

FLEXIQuant: A Novel Tool for the Absolute Quantification of Proteins, and the Simultaneous Identification and Quantification of Potentially Modified Peptides

Singh, Sasha, Springer, Michael, Steen, Judith, Kirschner, Marc W., Steen, Hanno

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.34 MB

english, 2009

46

Immunoproteomic Identification of Secretory and Subcellular Protein Antigens and Functional Evaluation of the Secretome Fraction of Mycobacterium immunogenum , a Newly Recognized Species of the Mycobacterium chelonae−Mycobacterium abscessus Group

Gupta, Manish K., Subramanian, Venkataramanan, Yadav, Jagjit S.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.49 MB

english, 2009

47

18 O 2 -Labeling in Quantitative Proteomic Strategies: A Status Report

Fenselau, Catherine, Yao, Xudong

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 319 KB

english, 2009

48

Shotgun Proteome Analysis of Rhodospirillum rubrum S1H: Integrating Data from Gel-Free and Gel-Based Peptides Fractionation Methods

Mastroleo, Felice, Leroy, Baptiste, Van Houdt, Rob, s’ Heeren, Catherine, Mergeay, Max, Hendrickx, Larissa, Wattiez, Ruddy

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.09 MB

english, 2009

49

Rites of (stem cell) passage

Perkel, Jeffrey M.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.04 MB

english, 2009

50

Analysis of the Poplar Phloem Proteome and Its Response to Leaf Wounding

Dafoe, Nicole J., Zamani, Arezoo, Ekramoddoullah, Abul K. M., Lippert, Dustin, Bohlmann, Jörg, Constabel, C. Peter

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.96 MB

english, 2009

51

Detection of Matrix Metalloproteinase Active Forms in Complex Proteomes: Evaluation of Affinity versus Photoaffinity Capture

Bregant, Sarah, Huillet, Céline, Devel, Laurent, Dabert-Gay, Anne-Sophie, Beau, Fabrice, Thai, Robert, Czarny, Bertrand, Yiotakis, Athanasios, Dive, Vincent

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.82 MB

english, 2009