Volume 8; Issue 4

Journal of Proteome Research

Volume 8; Issue 4

1

Two-Dimensional Differential Gel Electrophoresis of a Cell Line Derived from a Breast Cancer Micrometastasis Revealed a Stem/Progenitor Cell Protein Profile

Bartkowiak, Kai, Wieczorek, Marek, Buck, Friedrich, Harder, Sönke, Moldenhauer, Jennifer, Effenberger, Katharina E., Pantel, Klaus, Peter-Katalinic, Jasna, Brandt, Burkhard H.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.24 MB

english, 2009

2

Differential Proteomics of Omental and Subcutaneous Adipose Tissue Reflects Their Unalike Biochemical and Metabolic Properties

Pérez-Pérez, Rafael, Ortega-Delgado, Francisco J., García-Santos, Eva, López, Juan A., Camafeita, Emilio, Ricart, Wifredo, Fernández-Real, José-Manuel, Peral, Belén

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 4.04 MB

english, 2009

3

UPLC-MS-Based Analysis of Human Plasma for Metabonomics Using Solvent Precipitation or Solid Phase Extraction

Michopoulos, Filippos, Lai, Lindsay, Gika, Helen, Theodoridis, Georgios, Wilson, Ian

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.46 MB

english, 2009

4

Comparative Proteomic Analysis of Proteins Involved in Cell Aggregation during Neural Differentiation of P19 Mouse Embryonic Carcinoma Cells

Gao, Xia, Tian, Hong-Yu, Liu, Li, Yu, Mei-Lan, Jing, Nai-He, Zhao, Fu-Kun

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 3.32 MB

english, 2009

5

Nontargeted Urinary Metabolite Profiling of a Mouse Model of Crohn’s Disease

Lin, Hui-Ming, Edmunds, Shelley J., Helsby, Nuala A., Ferguson, Lynnette R., Rowan, Daryl D.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.51 MB

english, 2009

6

Proteomic Analysis of an α7 Nicotinic Acetylcholine Receptor Interactome

Paulo, Joao A., Brucker, William J., Hawrot, Edward

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.13 MB

english, 2009

7

Metabonomic Variations in the Drug-Treated Type 2 Diabetes Mellitus Patients and Healthy Volunteers

Bao, Yuqian, Zhao, Tie, Wang, Xiaoyan, Qiu, Yunping, Su, Mingming, Jia, Weiping, Jia, Wei

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.93 MB

english, 2009

8

Mucin Glycosylation Is Altered by Pro-Inflammatory Signaling in Pancreatic-Cancer Cells †

Wu, Yi-Mi, Nowack, D. David, Omenn, Gilbert S., Haab, Brian B.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 3.80 MB

english, 2009

9

Panorganismal Gut Microbiome−Host Metabolic Crosstalk

Martin, Francois-Pierre J., Sprenger, Norbert, Yap, Ivan K. S., Wang, Yulan, Bibiloni, Rodrigo, Rochat, Florence, Rezzi, Serge, Cherbut, Christine, Kochhar, Sunil, Lindon, John C., Holmes, Elaine, Nic

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 3.61 MB

english, 2009

10

Comparative Proteomic Analysis of Paclitaxel Sensitive A2780 Epithelial Ovarian Cancer Cell Line and Its Resistant Counterpart A2780TC1 by 2D-DIGE: The Role of ERp57

Cicchillitti, Lucia, Di Michele, Michela, Urbani, Andrea, Ferlini, Cristiano, Donati, Maria Benedetta, Scambia, Giovanni, Rotilio, Domenico

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.87 MB

english, 2009

11

Streptomyces erythraeus Trypsin for Proteomics Applications

Kiser, Jianying Z., Post, Marc, Wang, Benlian, Miyagi, Masaru

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.87 MB

english, 2009

12

Comparative Subproteome Analyses of Planktonic and Sessile Staphylococcus xylosus C2a: New Insight in Cell Physiology of a Coagulase-Negative Staphylococcus in Biofilm

Planchon, Stella, Desvaux, Mickaël, Chafsey, Ingrid, Chambon, Christophe, Leroy, Sabine, Hébraud, Michel, Talon, Régine

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.62 MB

english, 2009

13

Large-Scale Characterization and Analysis of the Murine Cardiac Proteome

Bousette, Nicolas, Kislinger, Thomas, Fong, Vincent, Isserlin, Ruth, Hewel, Johannes A., Emili, Andrew, Gramolini, Anthony O.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 759 KB

english, 2009

14

Plant Micrometabolomics: The Analysis of Endogenous Metabolites Present in a Plant Cell or Tissue

Moco, Sofia, Schneider, Bernd, Vervoort, Jacques

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.36 MB

english, 2009

15

Titanium Dioxide Coated MALDI Plate for On Target Analysis of Phosphopeptides

Torta, Federico, Fusi, Matteo, Casari, Carlo S., Bottani, Carlo E., Bachi, Angela

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.12 MB

english, 2009

16

A Refined Method To Calculate False Discovery Rates for Peptide Identification Using Decoy Databases

Navarro, Pedro, Vázquez, Jesús

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 184 KB

english, 2009

17

Comparison of Novel Decoy Database Designs for Optimizing Protein Identification Searches Using ABRF sPRG2006 Standard MS/MS Data Sets

Bianco, Luca, Mead, Jennifer A., Bessant, Conrad

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 470 KB

english, 2009

18

How do psychotropic drugs work?

Cottingham, Katie

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 199 KB

english, 2009

19

Proteomic Characterization of Midproliferative and Midsecretory Human Endometrium

Chen, Jenny I-C., Hannan, Natalie J., Mak, Yunxian, Nicholls, Peter K., Zhang, Jin, Rainczuk, Adam, Stanton, Peter G., Robertson, David M., Salamonsen, Lois A., Stephens, Andrew N.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 6.39 MB

english, 2009

20

Discrimination of Healthy and Neoplastic Human Colon Tissues by ex Vivo HR-MAS NMR Spectroscopy and Chemometric Analyses

Righi, Valeria, Durante, Caterina, Cocchi, Marina, Calabrese, Carlo, Di Febo, Giulio, Lecce, Ferdinando, Pisi, Annamaria, Tugnoli, Vitaliano, Mucci, Adele, Schenetti, Luisa

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1017 KB

english, 2009

21

Global Proteomic Analysis of the Chromate Response in Arthrobacter sp. Strain FB24

Henne, Kristene L., Turse, Joshua E., Nicora, Carrie D., Lipton, Mary S., Tollaksen, Sandra L., Lindberg, Carl, Babnigg, Gyorgy, Giometti, Carol S., Nakatsu, Cindy H., Thompson, Dorothea K., Konopka,

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.25 MB

english, 2009

22

Toward a better understanding of celiac disease

Cottingham, Katie

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 270 KB

english, 2009

23

Analyzing the Effects of Psychotropic Drugs on Metabolite Profiles in Rat Brain Using 1 H NMR Spectroscopy

McLoughlin, Gerard A., Ma, Dan, Tsang, Tsz M., Jones, Declan N. C., Cilia, Jackie, Hill, Mark D., Robbins, Melanie J., Benzel, Isabel M., Maycox, Peter R., Holmes, Elaine, Bahn, Sabine

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.49 MB

english, 2009

24

Liver Proteome Analysis in a Rodent Model of Alcoholic Steatosis

Newton, Billy W., Russell, William K., Russell, David H., Ramaiah, Shashi K., Jayaraman, Arul

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 3.21 MB

english, 2009

25

Proteomic Characteristics of ex vivo -Enriched Adult Human Bone Marrow Mononuclear Cells in Continuous Perfusion Cultures

Prahalad, Agasanur K., Hock, Janet M.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.02 MB

english, 2009

26

Alignment-Free Prediction of Polygalacturonases with Pseudofolding Topological Indices: Experimental Isolation from Coffea arabica and Prediction of a New Sequence

Agüero-Chapin, Guillermín, Varona-Santos, Javier, de la Riva, Gustavo A., Antunes, Agostinho, González-Villa, Tomás, Uriarte, Eugenio, González-Díaz, Humberto

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.34 MB

english, 2009

27

Oxidative Stress and Asthma: Proteome Analysis of Chitinase-like Proteins and FIZZ1 in Lung Tissue and Bronchoalveolar Lavage Fluid

Zhang, Lifeng, Wang, Meiying, Kang, Xuedong, Boontheung, Pinmanee, Li, Ning, Nel, Andre E., Loo, Joseph A.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.70 MB

english, 2009

28

Calendar

Journal:

Journal of Proteome Research

Année:

2009

Fichier:

PDF, 811 KB

2009

29

Cytoskeleton-Associated Large RNP Complexes in Tobacco Male Gametophyte (EPPs) Are Associated with Ribosomes and Are Involved in Protein Synthesis, Processing, and Localization

Honys, David, Reňák, David, Feciková, Jana, Jedelský, Petr L., Nebesářová, Jana, Dobrev, Petre, Čapková, Věra

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 3.89 MB

english, 2009

30

Essential Core of Protein−Protein Interaction Network in Escherichia coli

Lin, Chen-Ching, Juan, Hsueh-Fen, Hsiang, Jen-Tsung, Hwang, Yih-Chii, Mori, Hirotada, Huang, Hsuan-Cheng

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.25 MB

english, 2009

31

Application of Fluorogenic Derivatization-Liquid Chromatography-Tandem Mass Spectrometric Proteome Method to Skeletal Muscle Proteins in Fast Thoroughbred Horses

Ichibangase, Tomoko, Imai, Kazuhiro

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 707 KB

english, 2009

32

Selective Expression of Syntaxin-7 Protein in Benign Melanocytes and Malignant Melanoma

Strömberg, Sara, Agnarsdóttir, Margrét, Magnusson, Kristina, Rexhepaj, Elton, Bolander, Åsa, Lundberg, Emma, Asplund, Anna, Ryan, Denise, Rafferty, Mairin, Gallagher, William M., Uhlen, Mathias, Be

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 3.29 MB

english, 2009

33

A Quantitative Analysis of Transglutaminase 2-Mediated Deamidation of Gluten Peptides: Implications for the T-cell Response in Celiac Disease

Dørum, Siri, Qiao, Shuo-Wang, Sollid, Ludvig M., Fleckenstein, Burkhard

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 656 KB

english, 2009

34

Protein Carbonyl Formation in Response to Propiconazole-Induced Oxidative Stress

Bruno, Maribel, Moore, Tanya, Nesnow, Stephen, Ge, Yue

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.66 MB

english, 2009

35

Homodimeric Alkaline Phosphatase Located at Helicoverpa armigera Midgut, a Putative Receptor of Cry1Ac Contains α-GalNAc in Terminal Glycan Structure as Interactive Epitope †

Sarkar, Anindya, Hess, Daniel, Mondal, Hossain A., Banerjee, Santanu, Sharma, Hari C., Das, Sampa

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 3.63 MB

english, 2009

36

S-layer, Surface-Accessible, and Concanavalin A Binding Proteins of Methanosarcina acetivorans and Methanosarcina mazei

Francoleon, Deborah R., Boontheung, Pinmanee, Yang, Yanan, Kim, UnMi, Ytterberg, A. Jimmy, Denny, Patricia A., Denny, Paul C., Loo, Joseph A., Gunsalus, Robert P., Ogorzalek Loo, Rachel R.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 4.18 MB

english, 2009

37

SLoMo: Automated Site Localization of Modifications from ETD/ECD Mass Spectra

Bailey, Christopher M., Sweet, Steve M. M., Cunningham, Debbie L., Zeller, Martin, Heath, John K., Cooper, Helen J.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.40 MB

english, 2009

38

Multiple-Approaches to the Identification and Quantification of Cytochromes P450 in Human Liver Tissue by Mass Spectrometry

Seibert, Cathrin, Davidson, Brian R., Fuller, Barry J., Patterson, Laurence H., Griffiths, William J., Wang, Yuqin

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 436 KB

english, 2009

39

Proteome Analysis of Early-Stage Soybean Seedlings under Flooding Stress

Hashiguchi, Akiko, Sakata, Katsumi, Komatsu, Setsuko

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 4.44 MB

english, 2009

40

Analysis of the Pancreatic Tumor Progression by a Quantitative Proteomic Approach and Immunhistochemical Validation

Sitek, Barbara, Sipos, Bence, Alkatout, Ibrahim, Poschmann, Gereon, Stephan, Christian, Schulenborg, Thomas, Marcus, Katrin, Lüttges, Jutta, Dittert, Dag-Daniel, Baretton, Gustavo, Schmiegel, Wolff,

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 3.27 MB

english, 2009

41

Post Analysis Data Acquisition for the Iterative MS/MS Sampling of Proteomics Mixtures

Hoopmann, Michael R., Merrihew, Gennifer E., von Haller, Priska D., MacCoss, Michael J.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.08 MB

english, 2009

42

Statistical Calibration of the SEQUEST XCorr Function

Klammer, Aaron A., Park, Christopher Y., Noble, William Stafford

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.07 MB

english, 2009

43

Combination of 1 H Nuclear Magnetic Resonance Spectroscopy and Liquid Chromatography/Mass Spectrometry with Pattern Recognition Techniques for Evaluation of Metabolic Profile Associated with Albuminuria

Law, Wai Siang, Huang, Pei Yun, Ong, Eng Shi, Sethi, Sunil Kumar, Saw, Sharon, Ong, Choon Nam, Li, Sam Fong Yau

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 676 KB

english, 2009

44

Exploring DNA-Binding Proteins with In Vivo Chemical Cross-Linking and Mass Spectrometry

Qiu, Haibo, Wang, Yinsheng

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.84 MB

english, 2009

45

N-Linked Glycoproteomic Analysis of Formalin-Fixed and Paraffin-Embedded Tissues

Tian, Yuan, Gurley, Kay, Meany, Danni L., Kemp, Christopher J., Zhang, Hui

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 191 KB

english, 2009

46

Comparative Interactomics: Analysis of Arabidopsis 14-3-3 Complexes Reveals Highly Conserved 14-3-3 Interactions between Humans and Plants

Paul, Anna-Lisa, Liu, Li, McClung, Scott, Laughner, Beth, Chen, Sixue, Ferl, Robert J.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.07 MB

english, 2009

47

hPDQ: pretty darn quick generation of verification assays?

Cottingham, Katie

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 39 KB

english, 2009

48

Tissue Proteomics and Metabolomics: An Excellent Start and a Promising Future

Veenstra, Timothy D., Zhou, Ming

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 102 KB

english, 2009

49

Impact of Phenolic Substrate and Growth Temperature on the Arthrobacter chlorophenolicus Proteome

Unell, Maria, Abraham, Paul E., Shah, Manesh, Zhang, Bing, Rückert, Christian, VerBerkmoes, Nathan C., Jansson, Janet K.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 6.60 MB

english, 2009

50

Quantitative Analysis of N-Linked Glycoproteins in Tear Fluid of Climatic Droplet Keratopathy by Glycopeptide Capture and iTRAQ †

Zhou, Lei, Beuerman, Roger W., Chew, Ai Ping, Koh, Siew Kwan, Cafaro, Thamara A., Urrets-Zavalia, Enrique A., Urrets-Zavalia, Julio A., Li, Sam F. Y., Serra, Horacio M.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.77 MB

english, 2009

51

Stress Responses and Conditioning Effects in Mesothelial Cells Exposed to Peritoneal Dialysis Fluid

Kratochwill, Klaus, Lechner, Michael, Siehs, Christian, Lederhuber, Hans C., Rehulka, Pavel, Endemann, Michaela, Kasper, David C., Herkner, Kurt R., Mayer, Bernd, Rizzi, Andreas, Aufricht, Christoph

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.34 MB

english, 2009

52

Quantitative Differential Proteome Analysis in an Animal Model for Human Melanoma

Lokaj, Katrin, Meierjohann, Svenja, Schütz, Claudia, Teutschbein, Janka, Schartl, Manfred, Sickmann, Albert

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 5.26 MB

english, 2009

53

New Insights into the Respiratory Chains of the Chemolithoautotrophic and Hyperthermophilic Bacterium Aquifex aeolicus

Guiral, Marianne, Prunetti, Laurence, Lignon, Sabrina, Lebrun, Régine, Moinier, Danielle, Giudici-Orticoni, Marie-Thérèse

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 3.38 MB

english, 2009

54

A common aquarium fish helps unlock the secrets of melanoma

Cottingham, Katie

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 964 KB

english, 2009

55

Proteomic Analysis of Proteins Bound to Adsorption Units of Extracorporeal Liver Support System under Clinical Conditions

Mares, Jan, Thongboonkerd, Visith, Tuma, Zdenek, Moravec, Jiri, Karvunidis, Thomas, Matejovic, Martin

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 4.19 MB

english, 2009