Volume 8; Issue 1

Journal of Proteome Research

Volume 8; Issue 1

1

Absolute Protein Quantification by LC/MSE for Global Analysis of Salicylic Acid-Induced Plant Protein Secretion Responses

Cheng, Fang-yi, Blackburn, Kevin, Lin, Yu-min, Goshe, Michael B., Williamson, John D.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 3.56 MB

english, 2009

2

Combining Proteomics and Metabolite Analyses To Unravel Cadmium Stress-Response in Poplar Leaves

Kieffer, Pol, Planchon, Sébastien, Oufir, Mouhssin, Ziebel, Johanna, Dommes, Jacques, Hoffmann, Lucien, Hausman, Jean-François, Renaut, Jenny

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 382 KB

english, 2009

3

Quantitative Urinary Proteome Analysis for Biomarker Evaluation in Chronic Kidney Disease

Jantos-Siwy, Justyna, Schiffer, Eric, Brand, Korbinian, Schumann, Gerhard, Rossing, Kasper, Delles, Christian, Mischak, Harald, Metzger, Jochen

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 3.35 MB

english, 2009

4

Temporal Quantitative Proteomics by iTRAQ 2D-LC-MS/MS and Corresponding mRNA Expression Analysis Identify Post-Transcriptional Modulation of Actin-Cytoskeleton Regulators During TGF-β-Induced Epithelial-Mesenchymal Transition

Keshamouni, Venkateshwar G., Jagtap, Pratik, Michailidis, George, Strahler, John R., Kuick, Rork, Reka, Ajaya Kumar, Papoulias, Panagiotis, Krishnapuram, Rashmi, Srirangam, Anjaiah, Standiford, Theodo

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 4.05 MB

english, 2009

5

Turnover of the Human Proteome: Determination of Protein Intracellular Stability by Dynamic SILAC

Doherty, Mary K., Hammond, Dean E., Clague, Michael J., Gaskell, Simon J., Beynon, Robert J.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 767 KB

english, 2009

6

Proteomics Analysis of Nasopharyngeal Carcinoma Cell Secretome Using a Hollow Fiber Culture System and Mass Spectrometry

Wu, Hsin-Yi, Chang, Ying-Hwa, Chang, Yu-Chen, Liao, Pao-Chi

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 483 KB

english, 2009

7

Proteomic Changes in Escherichia coli When Grown in Fresh Milk versus Laboratory Media

Lippolis, John D., Bayles, Darrell O., Reinhardt, Timothy A.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 238 KB

english, 2009

8

Analysis of Protein Expression and Compartmentalization in Retinal Neurons Using Serial Tangential Sectioning of the Retina

Song, Hongman, Sokolov, Maxim

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 3.25 MB

english, 2009

9

Proteomic Analysis of Human Bile from Malignant Biliary Stenosis Induced by Pancreatic Cancer

Farina, Annarita, Dumonceau, Jean-Marc, Frossard, Jean-Louis, Hadengue, Antoine, Hochstrasser, Denis F., Lescuyer, Pierre

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.37 MB

english, 2009

10

Standard Operating Procedures for Serum and Plasma Collection: Early Detection Research Network Consensus Statement Standard Operating Procedure Integration Working Group

Tuck, Melissa K., Chan, Daniel W., Chia, David, Godwin, Andrew K., Grizzle, William E., Krueger, Karl E., Rom, William, Sanda, Martin, Sorbara, Lynn, Stass, Sanford, Wang, Wendy, Brenner, Dean E.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 117 KB

english, 2009

11

The Metabonomic Signature of Celiac Disease

Bertini, Ivano, Calabrò, Antonio, De Carli, Valeria, Luchinat, Claudio, Nepi, Stefano, Porfirio, Berardino, Renzi, Daniela, Saccenti, Edoardo, Tenori, Leonardo

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 316 KB

english, 2009

12

Proteomic Identification of Salivary Biomarkers of Type-2 Diabetes

Rao, Paturi V., Reddy, Ashok P., Lu, Xinfang, Dasari, Surendra, Krishnaprasad, Adiraju, Biggs, Evan, Roberts, Charles T., Nagalla, Srinivasa R.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 977 KB

english, 2009

13

Proteomic Analysis of Multiprotein Complexes in the Thylakoid Membrane upon Cadmium Treatment

Fagioni, Marco, D’Amici, Gian Maria, Timperio, Anna Maria, Zolla, Lello

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 4.72 MB

english, 2009

14

Quantitative Proteomic Profiling of Host−Pathogen Interactions: The Macrophage Response to Mycobacterium tuberculosis Lipids

Shui, Wenqing, Gilmore, Sarah A., Sheu, Leslie, Liu, Jun, Keasling, Jay D., Bertozzi, Carolyn R.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.27 MB

english, 2009

15

Biomarker Discovery in Low-Grade Breast Cancer Using Isobaric Stable Isotope Tags and Two-Dimensional Liquid Chromatography-Tandem Mass Spectrometry (iTRAQ-2DLC-MS/MS) Based Quantitative Proteomic Analysis

Bouchal, Pavel, Roumeliotis, Theodoros, Hrstka, Roman, Nenutil, Rudolf, Vojtesek, Borivoj, Garbis, Spiros D.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.56 MB

english, 2009

16

Confounding Effect of Obstructive Jaundice in the Interpretation of Proteomic Plasma Profiling Data for Pancreatic Cancer

Yan, Li, Tonack, Sarah, Smith, Richard, Dodd, Susanna, Jenkins, Rosalind E., Kitteringham, Neil, Greenhalf, William, Ghaneh, Paula, Neoptolemos, John P., Costello, Eithne

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.17 MB

english, 2009

17

Metabolic Profiling of Human Colorectal Cancer Using High-Resolution Magic Angle Spinning Nuclear Magnetic Resonance (HR-MAS NMR) Spectroscopy and Gas Chromatography Mass Spectrometry (GC/MS)

Chan, Eric Chun Yong, Koh, Poh Koon, Mal, Mainak, Cheah, Peh Yean, Eu, Kong Weng, Backshall, Alexandra, Cavill, Rachel, Nicholson, Jeremy K., Keun, Hector C.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.31 MB

english, 2009

18

Evaluation of Urine Proteome Pattern Analysis for Its Potential To Reflect Coronary Artery Atherosclerosis in Symptomatic Patients

von zur Muhlen, Constantin, Schiffer, Eric, Zuerbig, Petra, Kellmann, Marcus, Brasse, Mario, Meert, Natalie, Vanholder, Raymond C., Dominiczak, Anna F., Chen, Yung Chih, Mischak, Harald, Bode, Christo

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 7.62 MB

english, 2009

19

Temporal Profiling of the Adipocyte Proteome during Differentiation Using a Five-Plex SILAC Based Strategy

Molina, Henrik, Yang, Yi, Ruch, Travis, Kim, Jae-Woo, Mortensen, Peter, Otto, Tamara, Nalli, Anuradha, Tang, Qi-Qun, Lane, M. Daniel, Chaerkady, Raghothama, Pandey, Akhilesh

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 7.08 MB

english, 2009

20

Two-Dimensional Difference Gel Electrophoresis Analysis of Streptococcus uberis in Response to Mutagenesis-Inducing Ciprofloxacin Challenge

Poutanen, Marjo, Varhimo, Emilia, Kalkkinen, Nisse, Sukura, Antti, Varmanen, Pekka, Savijoki, Kirsi

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 4.44 MB

english, 2009

21

Nothing to spit at: the salivary proteome of type 2 diabetes

Cassiday, Laura

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 509 KB

english, 2009

22

Proteins Associated with Immunopurified Granules from a Model Pancreatic Islet β-Cell System: Proteomic Snapshot of an Endocrine Secretory Granule

Hickey, Anthony J. R., Bradley, Joshua W. I., Skea, Gretchen L., Middleditch, Martin J., Buchanan, Christina M., Phillips, Anthony R. J., Cooper, Garth J. S.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 440 KB

english, 2009

23

Proteomics and Redox-Proteomics of the Effects of Herbicides on a Wild-Type Wine Saccharomyces cerevisiae Strain

Braconi, Daniela, Bernardini, Giulia, Possenti, Silvia, Laschi, Marcella, Arena, Simona, Scaloni, Andrea, Geminiani, Michela, Sotgiu, Michele, Santucci, Annalisa

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 7.94 MB

english, 2009

24

Integrated Analysis of Transcript, Protein and Metabolite Data To Study Lignin Biosynthesis in Hybrid Aspen

Bylesjö, Max, Nilsson, Robert, Srivastava, Vaibhav, Grönlund, Andreas, Johansson, Annika I., Jansson, Stefan, Karlsson, Jan, Moritz, Thomas, Wingsle, Gunnar, Trygg, Johan

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 6.90 MB

english, 2009

25

Temporal Proteomic Analysis of Intestine Developing Necrotizing Enterocolitis following Enteral Formula Feeding to Preterm Pigs

Jiang, Pingping, Sangild, Per T., Sit, Wai-Hung, Ngai, Heidi Hoi-Yee, Xu, Ruojun, Siggers, Jayda Lee Ann, Wan, Jennifer Man-Fan

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 9.45 MB

english, 2009

26

Fully Automatic Separation and Identification of Phosphopeptides by Continuous pH-Gradient Anion Exchange Online Coupled with Reversed-Phase Liquid Chromatography Mass Spectrometry

Dai, Jie, Wang, Lian-Shui, Wu, Yi-Bo, Sheng, Quan-Hu, Wu, Jia-Rui, Shieh, Chia-Hui, Zeng, Rong

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.16 MB

english, 2009

27

Proteomic Analysis of HepaRG Cells: A Novel Cell Line That Supports Hepatitis B Virus Infection

Narayan, Ramamurthy, Gangadharan, Bevin, Hantz, Olivier, Antrobus, Robin, García, Ángel, Dwek, Raymond A., Zitzmann, Nicole

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.00 MB

english, 2009

28

Calendar

Journal:

Journal of Proteome Research

Année:

2009

Fichier:

PDF, 1.05 MB

2009

29

Tandem Mass Spectrometry with Ultrahigh Mass Accuracy Clarifies Peptide Identification by Database Retrieval

Boyne, Michael T., Garcia, Benjamin A., Li, Mingxi, Zamdborg, Leonid, Wenger, Craig D., Babai, Shannee, Kelleher, Neil L.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 603 KB

english, 2009

30

Systematic Definition of Protein Constituents along the Major Polarization Axis Reveals an Adaptive Reuse of the Polarization Machinery in Pheromone-Treated Budding Yeast

Narayanaswamy, Rammohan, Moradi, Emily K., Niu, Wei, Hart, G. Traver, Davis, Matthew, McGary, Kriston L., Ellington, Andrew D., Marcotte, Edward M.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 13.52 MB

english, 2009

31

Proteomic Profiling of Proliferating and Differentiated Neural mes-c-myc A1 Cell Line from Mouse Embryonic Mesencephalon by LC−MS

Chambery, Angela, Colucci-D’Amato, Luca, Vissers, Johannes P. C., Scarpella, Simona, Langridge, James I., Parente, Augusto

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 6.84 MB

english, 2009

32

Proteomic Analysis of Ionizing Radiation-Induced Proteins at the Subcellular Level

Lin, Ru-Xian, Zhao, Hai-Bao, Li, Chun-Rong, Sun, Yu-Ning, Qian, Xiao-Hong, Wang, Sheng-Qi

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 17.11 MB

english, 2009

33

Imaging-Based Live Cell Yeast Screen Identifies Novel Factors Involved in Peroxisome Assembly

Wolinski, Heimo, Petrovič, Uroš, Mattiazzi, Mojca, Petschnigg, Julia, Heise, Bettina, Natter, Klaus, Kohlwein, Sepp D.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 11.42 MB

english, 2009

34

An in Vivo Membrane Density Perturbation Strategy for Identification of Liver Sinusoidal Surface Proteome Accessible from the Vasculature

Li, Xuanwen, Xie, Chunliang, Cao, Jia, He, Quanyuan, Cao, Rui, Lin, Yong, Jin, Qihui, Chen, Ping, Wang, Xianchun, Liang, Songping

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 7.85 MB

english, 2009

35

Temporal Stability of the Urinary Proteome after Kidney Transplant: More Sensitive than Protein Composition?

Akkina, Sanjeev K., Zhang, Yan, Nelsestuen, Gary L., Oetting, William S., Ibrahim, Hassan N.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 312 KB

english, 2009

36

Presto change-o: the epithelial−mesenchymal transition

Cassiday, Laura

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 2.24 MB

english, 2009

37

Large-Scale Analysis of Thermostable, Mammalian Proteins Provides Insights into the Intrinsically Disordered Proteome

Galea, Charles A., High, Anthony A., Obenauer, John C., Mishra, Ashutosh, Park, Cheon-Gil, Punta, Marco, Schlessinger, Avner, Ma, Jing, Rost, Burkhard, Slaughter, Clive A., Kriwacki, Richard W.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 921 KB

english, 2009

38

First Archaeal PEPB-Serine Protease Inhibitor from Sulfolobus solfataricus with Noncanonical Amino Acid Sequence in the Reactive-Site Loop

Palmieri, Gianna, Catara, Giuliana, Saviano, Michele, Langella, Emma, Gogliettino, Marta, Rossi, Mosè

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 3.75 MB

english, 2009

39

Large-Scale Multiplexed Quantitative Discovery Proteomics Enabled by the Use of an 18 O-Labeled “Universal” Reference Sample

Qian, Wei-Jun, Liu, Tao, Petyuk, Vladislav A., Gritsenko, Marina A., Petritis, Brianne O., Polpitiya, Ashoka D., Kaushal, Amit, Xiao, Wenzhong, Finnerty, Celeste C., Jeschke, Marc G., Jaitly, Navdeep,

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 944 KB

english, 2009

40

Locations Everyone: Lights, Camera, Action!

Murphy, Robert F., LaBaer, Joshua

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 100 KB

english, 2009

41

iTRAQ-Multidimensional Liquid Chromatography and Tandem Mass Spectrometry-Based Identification of Potential Biomarkers of Oral Epithelial Dysplasia and Novel Networks between Inflammation and Premalignancy

Ralhan, Ranju, DeSouza, Leroi V., Matta, Ajay, Chandra Tripathi, Satyendra, Ghanny, Shaun, DattaGupta, Siddhartha, Thakar, Alok, Chauhan, Shyam S., Siu, K. W. Michael

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 4.86 MB

english, 2009

42

Application of High-Content Analysis to the Study of Post-Translational Modifications of the Cytoskeleton

Drake, Peter J. M., Griffiths, Gareth J., Shaw, Leila, Benson, Rod P., Corfe, Bernard M.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 5.95 MB

english, 2009

43

Comparative Temporal Proteomics of a Response Regulator (SO2426)-Deficient Strain and Wild-Type Shewanella oneidensis MR-1 During Chromate Transformation

Chourey, Karuna, Thompson, Melissa R., Shah, Manesh, Zhang, Bing, VerBerkmoes, Nathan C., Thompson, Dorothea K., Hettich, Robert L.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.80 MB

english, 2009

44

Quantitative Overview of N 2 Fixation in Nostoc punctiforme ATCC 29133 through Cellular Enrichments and iTRAQ Shotgun Proteomics

Ow, Saw Yen, Noirel, Josselin, Cardona, Tanai, Taton, Arnaud, Lindblad, Peter, Stensjö, Karin, Wright, Phillip C.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.63 MB

english, 2009

45

Identifying markers of premalignancy

Willis, Randall C

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 1.50 MB

english, 2009

46

Citrate Boosts the Performance of Phosphopeptide Analysis by UPLC-ESI-MS/MS

Winter, Dominic, Seidler, Joerg, Ziv, Yael, Shiloh, Yosef, Lehmann, Wolf D.

Journal:

Journal of Proteome Research

Année:

2009

Langue:

english

Fichier:

PDF, 495 KB

english, 2009