Volume 7; Issue 8

Journal of Proteome Research

Volume 7; Issue 8

1

Proteomic Analysis of Exosomes from Human Neural Stem Cells by Flow Field-Flow Fractionation and Nanoflow Liquid Chromatography−Tandem Mass Spectrometry

Kang, Dukjin, Oh, Sunok, Ahn, Sung-Min, Lee, Bong-Hee, Moon, Myeong Hee

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 205 KB

english, 2008

2

Comparative Proteomic Studies in Rhodospirillum rubrum Grown under Different Nitrogen Conditions

Selao, Tiago T., Nordlund, Stefan, Norén, Agneta

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 3.25 MB

english, 2008

3

A Statistical Model for iTRAQ Data Analysis

Hill, Elizabeth G., Schwacke, John H., Comte-Walters, Susana, Slate, Elizabeth H., Oberg, Ann L., Eckel-Passow, Jeanette E., Therneau, Terry M., Schey, Kevin L.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 292 KB

english, 2008

4

A Proteomics Grade Electron Transfer Dissociation-Enabled Hybrid Linear Ion Trap-Orbitrap Mass Spectrometer

McAlister, Graeme C., Berggren, W. Travis, Griep-Raming, Jens, Horning, Stevan, Makarov, Alexander, Phanstiel, Doug, Stafford, George, Swaney, Danielle L., Syka, John E. P., Zabrouskov, Vlad

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 2.30 MB

english, 2008

5

Snake Venomics of the Lancehead Pitviper Bothrops asper: Geographic, Individual, and Ontogenetic Variations

Alape-Girón, Alberto, Sanz, Libia, Escolano, José, Flores-Díaz, Marietta, Madrigal, Marvin, Sasa, Mahmood, Calvete, Juan J.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 9.21 MB

english, 2008

6

Amazing Stability of Phosphate-Quaternary Amine Interactions

Woods, Amina S., Moyer, Susan C., Jackson, Shelley N.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 3.88 MB

english, 2008

7

Prediction of Acute Cellular Renal Allograft Rejection by Urinary Metabolomics Using MALDI-FTMS

Wang, Ji-Na, Zhou, Ying, Zhu, Tong-Yu, Wang, Xiangdong, Guo, Yin-Long

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 409 KB

english, 2008

8

TiO 2 -Based Phosphoproteomic Analysis of the Plasma Membrane and the Effects of Phosphatase Inhibitor Treatment

Thingholm, Tine E., Larsen, Martin R., Ingrell, Christian R., Kassem, Moustapha, Jensen, Ole N.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 151 KB

english, 2008

9

Characterization of the Mouse Pancreatic Islet Proteome and Comparative Analysis with Other Mouse Tissues

Petyuk, Vladislav A., Qian, Wei-Jun, Hinault, Charlotte, Gritsenko, Marina A., Singhal, Mudita, Monroe, Matthew E., Camp, David G., Kulkarni, Rohit N., Smith, Richard D.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 568 KB

english, 2008

10

Introduction of the Disulfide Proteome: Application of a Technique for the Analysis of Plant Storage Proteins as Well as Allergens †

Yano, Hiroyuki, Kuroda, Shigeru

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 6.16 MB

english, 2008

11

Search for Potential Markers for Prostate Cancer Diagnosis, Prognosis and Treatment in Clinical Tissue Specimens Using Amine-Specific Isobaric Tagging (iTRAQ) with Two-Dimensional Liquid Chromatography and Tandem Mass Spectrometry

Garbis, Spiros D., Tyritzis, Stavros I., Roumeliotis, Theodoros, Zerefos, Panagiotis, Giannopoulou, Eugenia G., Vlahou, Antonia, Kossida, Sophia, Diaz, Jose, Vourekas, Stavros, Tamvakopoulos, Constant

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 5.67 MB

english, 2008

12

A General System for Studying Protein−Protein Interactions in Gram-Negative Bacteria

Pelletier, Dale A., Hurst, Gregory B., Foote, Linda J., Lankford, Patricia K., McKeown, Catherine K., Lu, Tse-Yuan, Schmoyer, Denise D., Shah, Manesh B., Hervey, W. Judson, McDonald, W. Hayes, Hooker,

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 439 KB

english, 2008

13

Antibody Suspension Bead Arrays within Serum Proteomics

Schwenk, Jochen M., Gry, Marcus, Rimini, Rebecca, Uhlén, Mathias, Nilsson, Peter

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 5.72 MB

english, 2008

14

Proteome Profile of Human Breast Cancer Tissue Generated by LC−ESI−MS/MS Combined with Sequential Protein Precipitation and Solubilization

Gong, Yan, Wang, Nan, Wu, Fang, Cass, Carol E., Damaraju, Sambasivarao, Mackey, John R., Li, Liang

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 2.94 MB

english, 2008

15

Construction of a Proteome Profile and Functional Analysis of the Proteins Involved in the Initiation of Mouse Spermatogenesis

Huang, Xiao-yan, Guo, Xue-jiang, Shen, Jian, Wang, Yu-feng, Chen, Lin, Xie, Jin, Wang, Ning-ling, Wang, Fu-qiang, Zhao, Chun, Huo, Ran, Lin, Min, Wang, Xinru, Zhou, Zuo-min, Sha, Jia-hao

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 42.01 MB

english, 2008

16

Global Impact of Oncogenic Src on a Phosphotyrosine Proteome

Luo, Weifeng, Slebos, Robbert J., Hill, Salisha, Li, Ming, Brábek, Jan, Amanchy, Ramars, Chaerkady, Raghothama, Pandey, Akhilesh, Ham, Amy-Joan L., Hanks, Steven K.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 5.47 MB

english, 2008

17

Can Proteomics Retire the Western Blot?

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 104 KB

english, 2008

18

A Mechanism-Based ICAT Strategy for Comparing Relative Expression and Activity Levels of Glycosidases in Biological Systems

Hekmat, Omid, He, Shouming, Warren, R. Antony J., Withers, Stephen G.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 662 KB

english, 2008

19

Snake venomics uncoils venom composition, evolution

Perkel, Jeffrey M.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.72 MB

english, 2008

20

An enriching phosphotyrosine experience for Src substrates

Cottingham, Katie

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.32 MB

english, 2008

21

Proteomics Analysis of Major Royal Jelly Protein Changes under Different Storage Conditions

Li, Jian-ke, Feng, Mao, Zhang, Lan, Zhang, Zhao-hui, Pan, Ying-hong

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 4.20 MB

english, 2008

22

Identification of Reactive Cysteines in a Protein Using Arsenic Labeling and Collision-Induced Dissociation Tandem Mass Spectrometry

Lu, Meiling, Wang, Hailin, Wang, Zhongwen, Li, Xing-Fang, Le, X. Chris

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 2.24 MB

english, 2008

23

Calendar

Journal:

Journal of Proteome Research

Année:

2008

Fichier:

PDF, 1.10 MB

2008

24

Insertion of Membrane Proteins into Discoidal Membranes Using a Cell-Free Protein Expression Approach

Katzen, Federico, Fletcher, Julia E., Yang, Jian-Ping, Kang, Douglas, Peterson, Todd C., Cappuccio, Jenny A., Blanchette, Craig D., Sulchek, Todd, Chromy, Brett A., Hoeprich, Paul D., Coleman, Matthew

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 8.25 MB

english, 2008

25

Comprehensive Royal Jelly (RJ) Proteomics Using One- and Two-Dimensional Proteomics Platforms Reveals Novel RJ Proteins and Potential Phospho/Glycoproteins

Furusawa, Takako, Rakwal, Randeep, Nam, Hyung Wook, Shibato, Junko, Agrawal, Ganesh Kumar, Kim, Yu Sam, Ogawa, Yoko, Yoshida, Yasukazu, Kouzuma, Yoshiaki, Masuo, Yoshinori, Yonekura, Masami

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 9.33 MB

english, 2008

26

Conjugation of Complex Polyubiquitin Chains to WRNIP1

Bish, Rebecca A., Fregoso, Oliver I., Piccini, Antonella, Myers, Michael P.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 4.48 MB

english, 2008

27

Mass Spectrometry Image Correlation: Quantifying Colocalization

McDonnell, Liam A., van Remoortere, Alexandra, van Zeijl, René J. M., Deelder, André M.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 7.43 MB

english, 2008

28

Exploring the Chicken Egg White Proteome with Combinatorial Peptide Ligand Libraries

D’Ambrosio, Chiara, Arena, Simona, Scaloni, Andrea, Guerrier, Luc, Boschetti, Egisto, Mendieta, Martha Elena, Citterio, Attilio, Righetti, Pier Giorgio

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 5.52 MB

english, 2008

29

Precise Mapping of Increased Sialylation Pattern and the Expression of Acute Phase Proteins Accompanying Murine Tumor Progression in BALB/c Mouse by Integrated Sera Proteomics and Glycomics

Lin, Shu-Yu, Chen, Yi-Yun, Fan, Yao-Yun, Lin, Chia-Wei, Chen, Shui-Tsung, Wang, Andrew H.-J., Khoo, Kay-Hooi

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 3.85 MB

english, 2008

30

A Mouse Model Repository for Cancer Biomarker Discovery

Kelly-Spratt, Karen S., Kasarda, A. Erik, Igra, Mark, Kemp, Christopher J.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.08 MB

english, 2008

31

Mitosis-Dependent Protein Expression in Neuroblastoma Cell Line N1E-115

Azizi, Amedeo A., Kang, Sung-Ung, Freilinger, Angelika, Gruber-Olipitz, Mariella, Chen, Wei-Qiang, Yang, Jae-Won, Hengstschläger, Markus, Slavc, Irene, Lubec, Gert

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 5.43 MB

english, 2008

32

Selective Enrichment of Cysteine-Containing Peptides Using SPDP-Functionalized Superparamagnetic Fe 3 O 4 @SiO 2 Nanoparticles: Application to Comprehensive Proteomic Profiling

Palani, Arudra, Lee, Je-Sun, Huh, Jiyoung, Kim, Minsik, Lee, Yeon-Ji, Chang, Jeong Ho, Lee, Kwangyeol, Lee, Sang-Won

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 2.91 MB

english, 2008

33

Phosphorylation-Specific MS/MS Scoring for Rapid and Accurate Phosphoproteome Analysis

Payne, Samuel H., Yau, Margaret, Smolka, Marcus B., Tanner, Stephen, Zhou, Huilin, Bafna, Vineet

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.21 MB

english, 2008

34

Triplex Profiling of Functionally Distinct Chaperones (ERp29/PDI/BiP) Reveals Marked Heterogeneity of the Endoplasmic Reticulum Proteome in Cancer

Shnyder, Steven D., Mangum, Jonathan E., Hubbard, Michael J.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 4.91 MB

english, 2008

35

Mapping of Conformational mAb Epitopes to the C Domain of Human Angiotensin I-Converting Enzyme

Naperova, Irina A., Balyasnikova, Irina V., Schwartz, David E., Watermeyer, Jean, Sturrock, Edward D., Kost, Olga A., Danilov, Sergei M.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 8.93 MB

english, 2008

36

How Calmodulin Interacts with the Adenosine A 2A and the Dopamine D 2 Receptors

Woods, Amina S., Marcellino, Daniel, Jackson, Shelley N., Franco, Rafael, Ferré, Sergi, Agnati, Luigi F., Fuxe, Kjell

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 2.92 MB

english, 2008

37

Functional Clustering of Metastasis Proteins Describes Plastic Adaptation Resources of Breast-Cancer Cells to New Microenvironments †

Martín, Berta, Sanz, Rebeca, Aragüés, Ramón, Oliva, Baldo, Sierra, Angels

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 15.08 MB

english, 2008

38

Proteomic Analysis of Conditioned Media from the PC3, LNCaP, and 22Rv1 Prostate Cancer Cell Lines: Discovery and Validation of Candidate Prostate Cancer Biomarkers

Sardana, Girish, Jung, Klaus, Stephan, Carsten, Diamandis, Eleftherios P.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.86 MB

english, 2008

39

The Responses of Mitochondrial Proteome in Rat Liver to the Consumption of Moderate Ethanol: The Possible Roles of Aldo-Keto Reductases

Shi, Liang, Wang, Yuan, Tu, Shuyang, Li, Xiaolei, Sun, Maomao, Srivastava, Sanjay, Xu, Ningzhi, Bhatnagar, Aruni, Liu, Siqi

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 5.07 MB

english, 2008

40

Proteomic Dissection of Agonist-Specific TLR-Mediated Inflammatory Responses on Macrophages at Subcellular Resolution

Xue, Yan, Yun, Dong, Esmon, Alex, Zou, Peng, Zuo, Shuai, Yu, Yanbao, He, Fuchu, Yang, Pengyuan, Chen, Xian

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 3.65 MB

english, 2008

41

Application of Pressurized Solvents for Ultrafast Trypsin Hydrolysis in Proteomics: Proteomics on the Fly

López-Ferrer, Daniel, Petritis, Konstantinos, Hixson, Kim K., Heibeck, Tyler H., Moore, Ronald J., Belov, Mikhail E., Camp, David G., Smith, Richard D.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 502 KB

english, 2008

42

Imaging Mass Spectrometry of Intact Proteins from Alcohol-Preserved Tissue Specimens: Bypassing Formalin Fixation

Chaurand, Pierre, Latham, Joey C., Lane, Kirk B., Mobley, James A., Polosukhin, Vasiliy V., Wirth, Pamela S., Nanney, Lillian B., Caprioli, Richard M.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 14.59 MB

english, 2008

43

Enhancing Peptide Identification Confidence by Combining Search Methods

Alves, Gelio, Wu, Wells W., Wang, Guanghui, Shen, Rong-Fong, Yu, Yi-Kuo

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 2.96 MB

english, 2008

44

Colander: A Probability-Based Support Vector Machine Algorithm for Automatic Screening for CID Spectra of Phosphopeptides Prior to Database Search

Lu, Bingwen, Ruse, Cristian I., Yates, John R.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 160 KB

english, 2008

45

Evaluation of Hepatic-Metastasis Risk of Colorectal Cancer upon the Protein Signature of PI3K/AKT Pathway

Kang, Bin, Hao, Chunyi, Wang, Hongyi, Zhang, Jun, Xing, Rui, Shao, Jianmin, Li, Wenmei, Xu, Ningzhi, Lu, Youyong, Liu, Siqi

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 5.47 MB

english, 2008

46

Proteomic Analysis of the Balance between Survival and Cell Death Responses in Cisplatin-Mediated Ototoxicity

Jamesdaniel, Samson, Ding, Dalian, Kermany, Mohammad Habiby, Davidson, Bruce A., Knight III, Paul R., Salvi, Richard, Coling, Donald E.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 5.62 MB

english, 2008

47

Metabonomics Study of Intestinal Fistulas Based on Ultraperformance Liquid Chromatography Coupled with Q-TOF Mass Spectrometry (UPLC/Q-TOF MS)

Yin, Peiyuan, Zhao, Xinjie, Li, Qiurong, Wang, Jiangshan, Li, Jieshou, Xu, Guowang

Journal:

Journal of Proteome Research

Année:

2008

Fichier:

PDF, 52 KB

2008

48

A Proteomics Approach To Quantify Protein Levels Following RNA Interference: Case Study with Glutathione Transferase Superfamily from the Model Metazoan Caenorhabditis elegans

LaCourse, E. J., Perally, S., Hernandez-Viadel, M., Wright, H. A., Brophy, P. M.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 3.23 MB

english, 2008

49

Spectral Probabilities and Generating Functions of Tandem Mass Spectra: A Strike against Decoy Databases

Kim, Sangtae, Gupta, Nitin, Pevzner, Pavel A.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.83 MB

english, 2008

50

Sialylation alterations of acute-phase proteins in mice with tumors

Cottingham, Katie

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 389 KB

english, 2008

51

Discovering Oxysterols in Plasma: A Window on the Metabolome

Griffiths, William J., Hornshaw, Martin, Woffendin, Gary, Baker, Sharon F., Lockhart, Andrew, Heidelberger, Sibylle, Gustafsson, Magnus, Sjövall, Jan, Wang, Yuqin

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 956 KB

english, 2008

52

Multiple Reaction Monitoring of mTRAQ-Labeled Peptides Enables Absolute Quantification of Endogenous Levels of a Potential Cancer Marker in Cancerous and Normal Endometrial Tissues

DeSouza, Leroi V., Taylor, Adrian M., Li, Wei, Minkoff, Marjorie S., Romaschin, Alexander D., Colgan, Terence J., Siu, K. W. Michael

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.35 MB

english, 2008

53

Global Relationship between the Proteome and Transcriptome of Human Skeletal Muscle

Yi, Zhengping, Bowen, Benjamin P., Hwang, Hyonson, Jenkinson, Christopher P., Coletta, Dawn K., Lefort, Natalie, Bajaj, Mandeep, Kashyap, Sangeeta, Berria, Rachele, De Filippis, Elena A., Mandarino, L

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 687 KB

english, 2008

54

The Response of Human Colonocytes to Folate Deficiency in Vitro: Functional and Proteomic Analyses

Duthie, Susan J., Mavrommatis, Yiannis, Rucklidge, Gary, Reid, Martin, Duncan, Gary, Moyer, Mary P., Pirie, Lynn P., Bestwick, Charles S.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 411 KB

english, 2008

55

Separating the Wheat from the Chaff: Unbiased Filtering of Background Tandem Mass Spectra Improves Protein Identification

Junqueira, Magno, Spirin, Victor, Santana Balbuena, Tiago, Waridel, Patrice, Surendranath, Vineeth, Kryukov, Grigoriy, Adzhubei, Ivan, Thomas, Henrik, Sunyaev, Shamil, Shevchenko, Andrej

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.32 MB

english, 2008

56

Isocratic Solid Phase Extraction-Liquid Chromatography (SPE-LC) Interfaced to High-Performance Tandem Mass Spectrometry for Rapid Protein Identification

Hørning, Ole B., Kjeldsen, Frank, Theodorsen, Søren, Vorm, Ole, Jensen, Ole N.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 6.46 MB

english, 2008

57

Gel-Based Mass Spectrometric Analysis of Recombinant GABA A Receptor Subunits Representing Strongly Hydrophobic Transmembrane Proteins

Kang, Sung Ung, Fuchs, Karoline, Sieghart, Werner, Lubec, Gert

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 4.08 MB

english, 2008

58

An Immuno-Chemo-Proteomics Method for Drug Target Deconvolution

Saxena, Chaitanya, Zhen, Eugene, Higgs, Richard E., Hale, John E.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 3.63 MB

english, 2008

59

Application of Saturation Dye 2D-DIGE Proteomics to Characterize Proteins Modulated by Oxidized Low Density Lipoprotein Treatment of Human Macrophages

Dupont, Annabelle, Chwastyniak, Maggy, Beseme, Olivia, Guihot, Anne-Laure, Drobecq, Hervé, Amouyel, Philippe, Pinet, Florence

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 10.25 MB

english, 2008