Volume 7; Issue 6

Journal of Proteome Research

Volume 7; Issue 6

1

Proteomic Methodological Recommendations for Studies Involving Human Plasma, Platelets, and Peripheral Blood Mononuclear Cells

de Roos, Baukje, Duthie, Susan J., Polley, Abigael C. J., Mulholland, Francis, Bouwman, Freek G., Heim, Carolin, Rucklidge, Garry J., Johnson, Ian T., Mariman, Edwin C., Daniel, Hannelore

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 433 KB

english, 2008

2

Intrinsic Structural Disorder of DF31, a Drosophila Protein of Chromatin Decondensation and Remodeling Activities

Szőllősi, Edit, Bokor, Monika, Bodor, Andrea, Perczel, Andras, Klement, Eva, Medzihradszky, Katalin F., Tompa, Kalman, Tompa, Peter

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.34 MB

english, 2008

3

Proteomics- and Transcriptomics-Based Screening of Differentially Expressed Proteins and Genes in Brain of Wig Rat: A Model for Attention Deficit Hyperactivity Disorder (ADHD) Research

Hirano, Misato, Rakwal, Randeep, Shibato, Junko, Sawa, Hirofumi, Nagashima, Kazuo, Ogawa, Yoko, Yoshida, Yasukazu, Iwahashi, Hitoshi, Niki, Etsuo, Masuo, Yoshinori

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 711 KB

english, 2008

4

Proteomic Analysis of Nalidixic Acid Resistance in Escherichia coli: Identification and Functional Characterization of OM Proteins

Lin, Xiang-min, Li, Hui, Wang, Chao, Peng, Xuan-xian

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 287 KB

english, 2008

5

Proteomic and Metabolomic Analyses of the White-Rot Fungus Phanerochaete chrysosporium Exposed to Exogenous Benzoic Acid

Matsuzaki, Fumiko, Shimizu, Motoyuki, Wariishi, Hiroyuki

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 350 KB

english, 2008

6

Snake Venomics and Antivenomics of the Arboreal Neotropical Pitvipers Bothriechis lateralis and Bothriechis schlegelii

Lomonte, Bruno, Escolano, José, Fernández, Julián, Sanz, Libia, Angulo, Yamileth, Gutiérrez, José María, Calvete, Juan J.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 403 KB

english, 2008

7

Novel Fe 3 O 4 @TiO 2 Core−Shell Microspheres for Selective Enrichment of Phosphopeptides in Phosphoproteome Analysis

Li, Yan, Xu, Xiuqing, Qi, Dawei, Deng, Chunhui, Yang, Pengyuan, Zhang, Xiangmin

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 2.87 MB

english, 2008

8

Proteomic Identification of the Cus System as a Major Determinant of Constitutive Escherichia coli Silver Resistance of Chromosomal Origin

Lok, Chun-Nam, Ho, Chi-Ming, Chen, Rong, Tam, Paul Kwong-Hang, Chiu, Jen-Fu, Che, Chi-Ming

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 3.10 MB

english, 2008

9

Proteomic Analysis of Trypanosoma cruzi Resistance to Benznidazole

Andrade, Hélida M., Murta, Silvane M. F., Chapeaurouge, Alex, Perales, Jonas, Nirdé, Phillipe, Romanha, Alvaro J.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 4.66 MB

english, 2008

10

Proteomic Analysis of Neonatal Mouse Brain: Evidence for Hypoxia- and Ischemia-Induced Dephosphorylation of Collapsin Response Mediator Proteins

Zhou, Yuan, Bhatia, Inderjeet, Cai, Zhen, He, Qing-Yu, Cheung, Pik-To, Chiu, Jen-Fu

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 8.21 MB

english, 2008

11

Time Series Proteome Profiling To Study Endoplasmic Reticulum Stress Response

Mintz, Michelle, Vanderver, Adeline, Brown, Kristy J., Lin, Joseph, Wang, Zuyi, Kaneski, Christine, Schiffmann, Raphael, Nagaraju, Kanneboyina, Hoffman, Eric P., Hathout, Yetrib

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 2.23 MB

english, 2008

12

Protein Disorder Is Positively Correlated with Gene Expression in Escherichia coli

Paliy, Oleg, Gargac, Shawn M., Cheng, Yugong, Uversky, Vladimir N., Dunker, A. Keith

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 2.62 MB

english, 2008

13

Calendar

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 128 KB

english, 2008

14

Proteomics Based on Peptide Fractionation by SDS-Free PAGE

Ramos, Yassel, Gutierrez, Elain, Machado, Yoan, Sánchez, Aniel, Castellanos-Serra, Lila, González, Luis J., Fernández-de-Cossio, Jorge, Pérez-Riverol, Yasset, Betancourt, Lázaro, Gil, Jeovanis, P

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.57 MB

english, 2008

15

Development and Validation of Sandwich ELISA Microarrays with Minimal Assay Interference

Gonzalez, Rachel M., Seurynck-Servoss, Shannon L., Crowley, Sheila A., Brown, Marty, Omenn, Gilbert S., Hayes, Daniel F., Zangar, Richard C.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 4.56 MB

english, 2008

16

HUPO´s Human Proteome Project: the next big thing?

Cottingham, Katie

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 490 KB

english, 2008

17

U.S. HUPO Fourth Annual Conference

Cottingham, Katie

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 525 KB

english, 2008

18

A Connection between the Mitochondrial Permeability Transition Pore, Autophagy, and Cerebral Amyloidogenesis

Šoškić, Vukić, Klemm, Martina, Proikas-Cezanne, Tassula, Schwall, Gerhard P., Poznanović, Slobodan, Stegmann, Werner, Groebe, Karlfried, Zengerling, Helmut, Schoepf, Rainer, Burnet, Michael, Schr

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 4.24 MB

english, 2008

19

The Influence of Sample Preparation and Replicate Analyses on HeLa Cell Phosphoproteome Coverage

Ham, Bryan M., Yang, Feng, Jayachandran, Hemalatha, Jaitly, Navdeep, Monroe, Matthew E., Gritsenko, Marina A., Livesay, Eric A., Zhao, Rui, Purvine, Samuel O., Orton, Daniel, Adkins, Joshua N., Camp,

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.43 MB

english, 2008

20

MALDI-MS Monitoring of Differential Biomolecule Secretion from Human Lung Cells in Vitro Following Incubation with

Haddrell, Allen E., van Eeden, Stephen, Agnes, George R.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 3.96 MB

english, 2008

21

Glycomic Analysis of Alpha-Fetoprotein L3 in Hepatoma Cell Lines and Hepatocellular Carcinoma Patients

Nakagawa, Takatoshi, Miyoshi, Eiji, Yakushijin, Takayuki, Hiramatsu, Naoki, Igura, Takumi, Hayashi, Norio, Taniguchi, Naoyuki, Kondo, Akihiro

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 3.94 MB

english, 2008

22

Altered Proteome Biology of Cardiac Mitochondria Under Stress Conditions

Zhang, Jun, Liem, David A., Mueller, Michael, Wang, Yueju, Zong, Chenggong, Deng, Ning, Vondriska, Thomas M., Korge, Paavo, Drews, Oliver, MacLellan, W. Robb, Honda, Henry, Weiss, James N., Apweiler,

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 5.15 MB

english, 2008

23

Global Changes in and Characterization of Specific Sites of Phosphorylation in Mouse and Human Histone H1 Isoforms upon CDK Inhibitor Treatment Using Mass Spectrometry

Deterding, Leesa J., Bunger, Maureen K., Banks, Geoffrey C., Tomer, Kenneth B., Archer, Trevor K.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 2.84 MB

english, 2008

24

Identificating Cathepsin D as a Biomarker for Differentiation and Prognosis of Nasopharyngeal Carcinoma by Laser Capture Microdissection and Proteomic Analysis

Cheng, Ai-Lan, Huang, Wei-Guo, Chen, Zhu-Chu, Zhang, Peng-Fei, Li, Mao-Yu, Li, Feng, Li, Jian-Ling, Li, Cui, Yi, Hong, Peng, Fang, Duan, Chao-Jun, Xiao, Zhi-Qiang

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 17.66 MB

english, 2008

25

Different Signaling Pathways Expressed by Chicken Naïve CD4 + T Cells, CD4 + Lymphocytes Activated with Staphylococcal Enterotoxin B, and Those Malignantly Transformed by Marek’s Disease Virus

Buza, Joram J., Burgess, Shane C.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 121 KB

english, 2008

26

Identification of Intracellular Proteins Associated with the EBV-Encoded Nuclear Antigen 5 Using an Efficient TAP Procedure and FT-ICR Mass Spectrometry

Forsman, Alma, Rüetschi, Ulla, Ekholm, Josefine, Rymo, Lars

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 2.75 MB

english, 2008

27

A Framework for the Automated Analysis of Subcellular Patterns in Human Protein Atlas Images

Newberg, Justin, Murphy, Robert F.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 5.78 MB

english, 2008

28

Site-Specific Phosphorylation Profiling of Arabidopsis Proteins by Mass Spectrometry and Peptide Chip Analysis

de la Fuente van Bentem, Sergio, Anrather, Dorothea, Dohnal, Ilse, Roitinger, Elisabeth, Csaszar, Edina, Joore, Jos, Buijnink, Joshua, Carreri, Alessandro, Forzani, Celine, Lorkovic, Zdravko J., Barta

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 3.76 MB

english, 2008

29

Hepatocystin Is Not Secreted in Cyst Fluid of Hepatocystin Mutant Polycystic Liver Patients

Waanders, Esmé, Lameris, Anke L. L., Op den Camp, Huub J. M., Pluk, Wendy, Gloerich, Jolein, Strijk, Simon P., Drenth, Joost P. H.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 4.62 MB

english, 2008

30

New Products

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 332 KB

english, 2008

31

Identification and Characterization of Sulfolobus solfataricus P2 Proteome Using Multidimensional Liquid Phase Protein Separations

Assiddiq, Bobby F., Snijders, Ambrosius P. L., Chong, Poh Kuan, Wright, Phillip C., Dickman, Mark. J.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.41 MB

english, 2008

32

Prevalence of Intrinsic Disorder in the Intracellular Region of Human Single-Pass Type I Proteins: The Case of the Notch Ligand Delta-4

De Biasio, Alfredo, Guarnaccia, Corrado, Popovic, Matija, Uversky, Vladimir N., Pintar, Alessandro, Pongor, Sándor

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.61 MB

english, 2008

33

Isoform Analysis of LC−MS/MS Data from Multidimensional Fractionation of the Serum Proteome †

Krasnoselsky, Alexei L., Faca, Vitor M., Pitteri, Sharon J., Zhang, Qing, Hanash, Samir M.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 2.01 MB

english, 2008

34

Overexpression of Human Apolipoprotein B-100 Induces Severe Neurodegeneration in Transgenic Mice

Bereczki, Erika, Bernát, Gábor, Csont, Tamás, Ferdinandy, Péter, Scheich, Henning, Sántha, Miklós

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 6.94 MB

english, 2008

35

Proteomics approach identifies disease gene | A sweet workflow for glycosylation analysis | Candidate biomarkers in prostate secretions | Proteomics analysis of human embryonic stem cells |Improved detection of multiphosphorylated peptides by RPLC/MS/MS | Do cell phones alter the skin proteome?

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 198 KB

english, 2008

36

Proteomic Data Analysis Workflow for Discovery of Candidate Biomarker Peaks Predictive of Clinical Outcome for Patients with Acute Myeloid Leukemia †

Forshed, Jenny, Pernemalm, Maria, Tan, Chuen Seng, Lindberg, Marita, Kanter, Lena, Pawitan, Yudi, Lewensohn, Rolf, Stenke, Leif, Lehtiö, Janne

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.05 MB

english, 2008

37

Studying O -Linked Protein Glycosylations in Human Plasma

Williams, Taufika Islam, Saggese, Diana A., Muddiman, David C.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.42 MB

english, 2008

38

A Liquid Chromatography−Quadrupole Time-of-Flight (LC−QTOF)-based Metabolomic Approach Reveals New Metabolic Effects of Catechin in Rats Fed High-Fat Diets

Fardet, Anthony, Llorach, Rafael, Martin, Jean-François, Besson, Catherine, Lyan, Bernard, Pujos-Guillot, Estelle, Scalbert, Augustin

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.72 MB

english, 2008

39

New associate editor

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 364 KB

english, 2008

40

Post-Translational Modifications of Desulfovibrio vulgaris Hildenborough Sulfate Reduction Pathway Proteins

Gaucher, Sara P., Redding, Alyssa M., Mukhopadhyay, Aindrila, Keasling, Jay D., Singh, Anup K.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 2.13 MB

english, 2008

41

The plant phosphoproteome: no longer a black box?

Cottingham, Katie

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 224 KB

english, 2008

42

Characterization of the Vitreous Proteome in Diabetes without Diabetic Retinopathy and Diabetes with Proliferative Diabetic Retinopathy

Gao, Ben-Bo, Chen, Xiaohong, Timothy, Nigel, Aiello, Lloyd Paul, Feener, Edward P.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 682 KB

english, 2008

43

iCluster | xQuest | Warp2D | PeakSelect

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 195 KB

english, 2008

44

Label-Free Detection of Differential Protein Expression by LC/MALDI Mass Spectrometry

Neubert, Hendrik, Bonnert, Timothy P., Rumpel, Klaus, Hunt, Brandon T., Henle, Ernst S., James, Ian T.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 4.62 MB

english, 2008

45

Enhanced Detection of Autoantibodies on Protein Microarrays Using a Modified Protein Digestion Technique

Patwa, Tasneem H., Wang, Yanfei, Simeone, Diane M., Lubman, David M.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 3.01 MB

english, 2008

46

Linear Discriminant Analysis-Based Estimation of the False Discovery Rate for Phosphopeptide Identifications †

Du, Xiuxia, Yang, Feng, Manes, Nathan P., Stenoien, David L., Monroe, Matthew E., Adkins, Joshua N., States, David J., Purvine, Samuel O., Camp, II, David G., Smith, Richard D.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 2.11 MB

english, 2008

47

Crop Proteomics and Its Application to Biotechnology

Komatsu, Setsuko

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 137 KB

english, 2008

48

Location proteomics analysis of Human Protein Atlas images

Cottingham, Katie

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 674 KB

english, 2008