Volume 7; Issue 2

Journal of Proteome Research

Volume 7; Issue 2

1

Phosphoproteome of Resting Human Platelets

Zahedi, René P., Lewandrowski, Urs, Wiesner, Julia, Wortelkamp, Stefanie, Moebius, Jan, Schütz, Claudia, Walter, Ulrich, Gambaryan, Stepan, Sickmann, Albert

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 609 KB

english, 2008

2

GPCR Proteomics: Mass Spectrometric and Functional Analysis of Histamine H 1 Receptor after Baculovirus-Driven and in Vitro Cell Free Expression

Sansuk, Kamonchanok, Balog, Crina I. A., van der Does, Anne M., Booth, Raymond, de Grip, Willem J., Deelder, André M., Bakker, Remko A., Leurs, Rob, Hensbergen, Paul J.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 970 KB

english, 2008

3

Phase Transfer Surfactant-Aided Trypsin Digestion for Membrane Proteome Analysis

Masuda, Takeshi, Tomita, Masaru, Ishihama, Yasushi

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.05 MB

english, 2008

4

Strategy for Comprehensive Identification of Post-translational Modifications in Cellular Proteins, Including Low Abundant Modifications: Application to Glyceraldehyde-3-phosphate Dehydrogenase

Seo, Jawon, Jeong, Jaeho, Kim, Young Mee, Hwang, Narae, Paek, Eunok, Lee, Kong-Joo

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 5.34 MB

english, 2008

5

Analysis of MALDI-TOF Mass Spectrometry Data for Discovery of Peptide and Glycan Biomarkers of Hepatocellular Carcinoma †

Ressom, Habtom W., Varghese, Rency S., Goldman, Lenka, An, Yanming, Loffredo, Christopher A., Abdel-Hamid, Mohamed, Kyselova, Zuzana, Mechref, Yehia, Novotny, Milos, Drake, Steven K, Goldman, Radoslav

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 2.17 MB

english, 2008

6

Highly Robust, Automated, and Sensitive Online TiO 2 -Based Phosphoproteomics Applied To Study Endogenous Phosphorylation in Drosophila melanogaster

Pinkse, Martijn W. H., Mohammed, Shabaz, Gouw, Joost W., van Breukelen, Bas, Vos, Harmjan R., Heck, Albert J. R.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.44 MB

english, 2008

7

Serological Immunoreactivity against Colon Cancer Proteome Varies upon Disease Progression

De Monte, Lucia, Sanvito, Francesca, Olivieri, Stefano, Viganò, Fiammetta, Doglioni, Claudio, Frasson, Matteo, Braga, Marco, Bachi, Angela, Dellabona, Paolo, Protti, Maria Pia, Alessio, Massimo

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.20 MB

english, 2008

8

Proteome Analysis of Pitcher Fluid of the Carnivorous Plant Nepenthes alata

Hatano, Naoya, Hamada, Tatsuro

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 275 KB

english, 2008

9

The Left Ventricle Proteome Differentiates Middle-Aged and Old Left Ventricles in Mice

Dai, Qiuxia, Escobar, G. Patricia, Hakala, Kevin W., Lambert, Jessica M., Weintraub, Susan T., Lindsey, Merry L.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 256 KB

english, 2008

10

Mechanistic Insights into the Multistage Gas-Phase Fragmentation Behavior of Phosphoserine- and Phosphothreonine-Containing Peptides

Palumbo, Amanda M., Tepe, Jetze J., Reid, Gavin E.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 205 KB

english, 2008

11

“Product Ion Monitoring” Assay for Prostate-Specific Antigen in Serum Using a Linear Ion-Trap

Kulasingam, Vathany, Smith, Christopher R., Batruch, Ihor, Buckler, Alan, Jeffery, Douglas A., Diamandis, Eleftherios P.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 830 KB

english, 2008

12

Evaluation of Microwave-Accelerated Residue-Specific Acid Cleavage for Proteomic Applications

Swatkoski, Stephen, Gutierrez, Peter, Wynne, Colin, Petrov, Alexey, Dinman, Jonathan D., Edwards, Nathan, Fenselau, Catherine

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.80 MB

english, 2008

13

Efficient Digestion and Mass Spectral Analysis of Vesicular Glutamate Transporter 1: A Recombinant Membrane Protein Expressed in Yeast

Cox, Holly D., Chao, Chih-Kai, Patel, Sarjubhai A., Thompson, Charles M.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 774 KB

english, 2008

14

Validating biomarkers in CSF

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 98 KB

english, 2008

15

Heat-Shock Response in Arabidopsis thaliana Explored by Multiplexed Quantitative Proteomics Using Differential Metabolic Labeling

Palmblad, Magnus, Mills, Davinia J., Bindschedler, Laurence V.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 235 KB

english, 2008

16

Application of Proteomics in the Discovery of Candidate Protein Biomarkers in a Diabetes Autoantibody Standardization Program Sample Subset

Metz, Thomas O., Qian, Wei-Jun, Jacobs, Jon M., Gritsenko, Marina A., Moore, Ronald J., Polpitiya, Ashoka D., Monroe, Matthew E., Camp II, David G., Mueller, Patricia W., Smith, Richard D.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.87 MB

english, 2008

17

People: New Editorial Advisory Board members

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 271 KB

english, 2008

18

Enhanced Membrane Protein Topology Prediction Using a Hierarchical Classification Method and a New Scoring Function

Lo, Allan, Chiu, Hua-Sheng, Sung, Ting-Yi, Lyu, Ping-Chiang, Hsu, Wen-Lian

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.01 MB

english, 2008

19

Integrative Top-Down System Metabolic Modeling in Experimental Disease States via Data-Driven Bayesian Methods

Bang, Jung-Wook, Crockford, Derek J., Holmes, Elaine, Pazos, Florencio, Sternberg, Michael J. E., Muggleton, Stephen H., Nicholson, Jeremy K.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.06 MB

english, 2008

20

The Mammary Epithelial Cell Secretome and Its Regulation by Signal Transduction Pathways

Jacobs, Jon M., Waters, Katrina M., Kathmann, Loel E., Camp, II, David G., Wiley, H. Steven, Smith, Richard D., Thrall, Brian D.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.41 MB

english, 2008

21

Use of DNA Ladders for Reproducible Protein Fractionation by Sodium Dodecyl Sulfate−Polyacrylamide Gel Electrophoresis (SDS−PAGE) for Quantitative Proteomics

Zhang, Guoan, Fenyö, David, Neubert, Thomas A.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 951 KB

english, 2008

22

Mitochondrial Dysfunction, Oxidative Stress, and Apoptosis Revealed by Proteomic and Transcriptomic Analyses of the Striata in Two Mouse Models of Parkinson’s Disease

Chin, Mark H., Qian, Wei-Jun, Wang, Haixing, Petyuk, Vladislav A., Bloom, Joshua S., Sforza, Daniel M., Laćan, Goran, Liu, Dahai, Khan, Arshad H., Cantor, Rita M., Bigelow, Diana J., Melega, William

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.22 MB

english, 2008

23

New Products

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 607 KB

english, 2008

24

Snake Venomics of Central American Pitvipers: Clues for Rationalizing the Distinct Envenomation Profiles of Atropoides nummifer and Atropoides picadoi

Angulo, Yamileth, Escolano, José, Lomonte, Bruno, Gutiérrez, José María, Sanz, Libia, Calvete, Juan J.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.04 MB

english, 2008

25

Proteomics Projects: HKUPP becomes a full-fledged initiative of its own

Cottingham, Katie

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 78 KB

english, 2008

26

High-Throughput Analysis of Rat Liver Plasma Membrane Proteome by a Nonelectrophoretic In-Gel Tryptic Digestion Coupled with Mass Spectrometry Identification

Cao, Rui, He, QuanYuan, Zhou, Jian, He, QuanZe, Liu, Zhen, Wang, XianChun, Chen, Ping, Xie, Jingyun, Liang, SongPing

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 788 KB

english, 2008

27

A Sulfated, Phosphorylated 7 kDa Secreted Peptide Characterized by Direct Analysis of Cell Culture Media

Taylor, Steven W., Sun, Chengzao, Hsieh, Amy, Andon, Nancy L., Ghosh, Soumitra S.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 189 KB

english, 2008

28

DNA Immunization Perturbs Lipid Metabolites and Increases Risk of Atherogenesis

Yang, Fu, Yan, Shikai, Wang, Fang, He, Ying, Guo, Yingjun, Zhou, Qi, Wang, Yue, Zhang, Xiaoying, Zhang, Weidong, Sun, Shuhan

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 888 KB

english, 2008

29

Electrophoretic method for broad MW-range proteome separation | Proteins that interact with amyloid precursor protein | LbL-coated memobeads for quantification in whole blood | Immunomagnetic diffractometry for biomarker detection | Three-step proteomics method to analyze cells in whole saliva | Finding a function for every gene | RefDIC | PHOSIDA | PICR | KEGGanim

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 800 KB

english, 2008

30

Proteomic Analysis of Calcium Alginate-Immobilized Saccharomyces cerevisiae under High-Gravity Fermentation Conditions

Pham, Trong Khoa, Wright, Phillip C.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.31 MB

english, 2008

31

Application of Targeted Quantitative Proteomics Analysis in Human Cerebrospinal Fluid Using a Liquid Chromatography Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Tandem Mass Spectrometer (LC MALDI TOF/TOF) Platform

Pan, Sheng, Rush, John, Peskind, Elaine R., Galasko, Douglas, Chung, Kathryn, Quinn, Joseph, Jankovic, Joseph, Leverenz, James B., Zabetian, Cyrus, Pan, Catherine, Wang, Yan, Oh, Jung Hun, Gao, Jean,

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.03 MB

english, 2008

32

Comparison of 1D and 2D NMR Spectroscopy for Metabolic Profiling

Van, Que N., Issaq, Haleem J., Jiang, Qiujie, Li, Qiaoli, Muschik, Gary M., Waybright, Timothy J., Lou, Hong, Dean, Michael, Uitto, Jouni, Veenstra, Timothy D.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 2.78 MB

english, 2008

33

Identification of Hepatocellular-Carcinoma-Associated Antigens and Autoantibodies by Serological Proteome Analysis Combined with Protein Microarray

Li, Lan, Chen, Su-hong, Yu, Chao-hui, Li, You-ming, Wang, Sheng-qi

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 927 KB

english, 2008

34

Quantitative Protein Network Monitoring in Response to DNA Damage

Nishizuka, Satoshi, Ramalingam, Sundhar, Spurrier, Brett, Washburn, Frank L., Krishna, Ramya, Honkanen, Peter, Young, Lynn, Shimura, Tsutomu, Steeg, Patricia S., Austin, John

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 925 KB

english, 2008

35

Let the Data Flow!

Bischoff, Rainer

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 86 KB

english, 2008

36

Proteomics Analysis of the Causative Agent of Typhoid Fever

Ansong, Charles, Yoon, Hyunjin, Norbeck, Angela D., Gustin, Jean K., McDermott, Jason E., Mottaz, Heather M., Rue, Joanne, Adkins, Joshua N., Heffron, Fred, Smith, Richard D.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 1.34 MB

english, 2008

37

Systematic Assessment of the Benefits and Caveats in Mining Microbial Post-Translational Modifications from Shotgun Proteomic Data: The Response of Shewanella oneidensis to Chromate Exposure

Thompson, Melissa R., Thompson, Dorothea K., Hettich, Robert L.

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 411 KB

english, 2008

38

Membrane Protein Identification: N-Terminal Labeling of Nontryptic Membrane Protein Peptides Facilitates Database Searching

Jansson, Maria, Wårell, Kristofer, Levander, Fredrik, James, Peter

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 873 KB

english, 2008

39

Rapid and Reliable Peptide de Novo Sequencing Facilitated by Microfluidic Chip-Based Edman Degradation

Chen, Wenzhang, Yin, Xuefeng, Yin, Yan

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 130 KB

english, 2008

40

Resolving and Identifying Protein Components of Plant Mitochondrial Respiratory Complexes Using Three Dimensions of Gel Electrophoresis

Meyer, Etienne H., Taylor, Nicolas L., Millar, A. Harvey

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 751 KB

english, 2008

41

Candidate biomarkers for type 1 diabetes

Cassiday, Laura

Journal:

Journal of Proteome Research

Année:

2008

Langue:

english

Fichier:

PDF, 179 KB

english, 2008