Volume 6; Issue 9

Journal of Proteome Research

Volume 6; Issue 9

1

Microscale Solution Isoelectric Focusing as an Effective Strategy Enabling Containment of Hemeoglobin-Derived Products for High-Resolution Gel-Based Analysis of the Plasmodium falciparum Proteome

Nirmalan, Niroshini, Flett, Fiona, Skinner, Tom, Hyde, John E., Sims, Paul F. G.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 493 KB

english, 2007

2

Immobilization of Trypsin on Superparamagnetic Nanoparticles for Rapid and Effective Proteolysis

Li, Yan, Xu, Xiuqing, Deng, Chunhui, Yang, Pengyuan, Zhang, Xiangmin

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 320 KB

english, 2007

3

In-Depth Proteomic Profiling of the Normal Human Kidney Glomerulus Using Two-Dimensional Protein Prefractionation in Combination with Liquid Chromatography-Tandem Mass Spectrometry

Miyamoto, Masahito, Yoshida, Yutaka, Taguchi, Izumi, Nagasaka, Yoshimi, Tasaki, Masayuki, Zhang, Ying, Xu, Bo, Nameta, Masaaki, Sezaki, Hiroshi, Cuellar, Lino M., Osawa, Tetsuo, Morishita, Hideo, Seki

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 629 KB

english, 2007

4

Hard (Beta-)Keratins in the Epidermis of Reptiles: Composition, Sequence, and Molecular Organization

Toni, Mattia, Dalla Valle, Luisa, Alibardi, Lorenzo

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 2.18 MB

english, 2007

5

Evaluation of Tubulointerstitial Lesions' Severity in Patients with Glomerulonephritides: An NMR-Based Metabonomic Study

Psihogios, Nikolaos G., Kalaitzidis, Rigas G., Dimou, Sofia, Seferiadis, Konstantin I., Siamopoulos, Kostas C., Bairaktari, Eleni T.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 392 KB

english, 2007

6

A Comparative Proteomic Analysis of Human and Rat Embryonic Cerebrospinal Fluid

Zappaterra, Mauro D., Lisgo, Steven N., Lindsay, Susan, Gygi, Steven P., Walsh, Christopher A., Ballif, Bryan A.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 576 KB

english, 2007

7

Proteome Cataloging and Relative Quantification of Francisella tularensis tularensis Strain Schu4 in 2D PAGE Using Preparative Isoelectric Focusing

Waldo, Robert H., Cummings, Edwin D., Sarva, Siva T., Brown, Janet M., Lauriano, Crystal M., Rose, Lorne A., Belland, Robert J., Klose, Karl E., Hilliard, George M.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 408 KB

english, 2007

8

Proteomic Studies of PP2A-B56γ1 Phosphatase Complexes Reveal Phosphorylation-Regulated Partners in Cardiac Local Signaling

Zhou, Xing Wang, Mudannayake, Malkanthi, Green, Mariah, Gigena, Marisa S., Wang, Guanghui, Shen, Rong-Fong, Rogers, Terry B.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 376 KB

english, 2007

9

Proteomic and Biochemical Studies of Calcium- and Phosphorylation-Dependent Calmodulin Complexes in Mammalian Cells

Jang, Deok-Jin, Guo, Mingquan, Wang, Daojing

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 653 KB

english, 2007

10

Identification of Proteins Involved in Microglial Endocytosis of α-Synuclein

Liu, Jun, Zhou, Yong, Wang, Yan, Fong, Hanson, Murray, Thomas M., Zhang, Jing

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 836 KB

english, 2007

11

Proteomic Analysis of Peripheral Blood Mononuclear Cells: Selective Protein Processing Observed in Patients with Rheumatoid Arthritis

Schulz, Martin, Dotzlaw, Helmut, Mikkat, Stefan, Eggert, Martin, Neeck, Gunther

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 369 KB

english, 2007

12

The Glycine max Xylem Sap and Apoplast Proteome

Djordjevic, Michael A., Oakes, Marie, Li, Dong Xue, Hwang, Cheol Ho, Hocart, Charles H., Gresshoff, Peter M.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 475 KB

english, 2007

13

Assessment Approach for Evaluating High Abundance Protein Depletion Methods for Cerebrospinal Fluid (CSF) Proteomic Analysis

Shores, Kevin S., Knapp, Daniel R.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 176 KB

english, 2007

14

Proteomic Analysis of Peritoneal Fluid in Women with Endometriosis

Ferrero, Simone, Gillott, David J., Remorgida, Valentino, Anserini, Paola, Leung, Kit-Yi, Ragni, Nicola, Grudzinskas, Jurgis G.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 720 KB

english, 2007

15

Lifetime Proteomic Profiling of an A30P α-Synuclein Drosophila Model of Parkinson's Disease

Xun, Zhiyin, Sowell, Renã A., Kaufman, Thomas C., Clemmer, David E.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 192 KB

english, 2007

16

How Shall We Use the Proteomics Toolbox for Biomarker Discovery?

Lescuyer, Pierre, Hochstrasser, Denis, Rabilloud, Thierry

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 91 KB

english, 2007

17

Identification and Antibody-Therapeutic Targeting of Chloramphenicol-Resistant Outer Membrane Proteins in Escherichia coli

Li, Hui, Lin, Xiang-min, Wang, San-ying, Peng, Xuan-xian

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 620 KB

english, 2007

18

Survey of Differentially Expressed Proteins and Genes in Jasmonic Acid Treated Rice Seedling Shoot and Root at the Proteomics and Transcriptomics Levels

Cho, Kyoungwon, Agrawal, Ganesh Kumar, Shibato, Junko, Jung, Young-Ho, Kim, Yeon-Ki, Nahm, Baek Hie, Jwa, Nam-Soo, Tamogami, Shigeru, Han, Oksoo, Kohda, Kimiyoshi, Iwahashi, Hitoshi, Rakwal, Randeep

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 1.00 MB

english, 2007

19

Subcellular Proteome Analysis of Camptothecin Analogue NSC606985-Treated Acute Myeloid Leukemic Cells

Yu, Yun, Wang, Li-Shun, Shen, Shao-Ming, Xia, Li, Zhang, Lei, Zhu, Yuan-Shan, Chen, Guo-Qiang

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 656 KB

english, 2007

20

Research Profile: The complex composition of embryonic CSF

Cottingham, Katie

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 139 KB

english, 2007

21

An Automated Platform for Analysis of Phosphoproteomic Datasets: Application to Kidney Collecting Duct Phosphoproteins

Hoffert, Jason D., Wang, Guanghui, Pisitkun, Trairak, Shen, Rong-Fong, Knepper, Mark A.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 451 KB

english, 2007

22

It Takes a Village To Develop Biomarkers

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 85 KB

english, 2007

23

Government & Society: New cancer center will focus on proteomics and genomics

Cottingham, Katie

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 93 KB

english, 2007

24

Currents: Automated 2DE | Proteomics screen reveals in vivo kinase targets | Identifying lipid-protein interactions | Studying protein domains to discover binding specificities | Human liver proteome analysis | Fast microarray analysis with automated image detection | TOOLbox: Simulated shotgun experiments | BioText for searching figure captions | Hardklör for high-resolution MS/MS | Data dissemination with PrestOMIC

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 242 KB

english, 2007

25

Comparative Profiling of Serum Glycoproteome by Sequential Purification of Glycoproteins and 2-Nitrobenzenesulfenyl (NBS) Stable Isotope Labeling: A New Approach for the Novel Biomarker Discovery for Cancer

Ueda, Koji, Katagiri, Toyomasa, Shimada, Takashi, Irie, Shinji, Sato, Taka-Aki, Nakamura, Yusuke, Daigo, Yataro

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 387 KB

english, 2007

26

Intestinal Epithelial Cell Proteome in IL-10 Deficient Mice and IL-10 Receptor Reconstituted Epithelial Cells: Impact on Chronic Inflammation

Werner, Tanja, Shkoda, Anna, Haller, Dirk

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 888 KB

english, 2007

27

Examining the Proteome of Drosophila Across Organism Lifespan

Sowell, Renã A., Hersberger, Katherine E., Kaufman, Thomas C., Clemmer, David E.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 588 KB

english, 2007

28

Bioinformatics Processing of Protein and Transcript Profiles of Normal and Transformed Cell Lines Indicates Functional Impairment of Transcriptional Regulators in Buccal Carcinoma

Staab, Claudia A., Ceder, Rebecca, Jägerbrink, Theres, Nilsson, Jan-Anders, Roberg, Karin, Jörnvall, Hans, Höög, Jan-Olov, Grafström, Roland C.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 686 KB

english, 2007

29

The Optimization of Protocols for Proteome Difference Gel Electrophoresis (DiGE) Analysis of Preneoplastic Skin

Hannigan, Adele, Burchmore, Richard, Wilson, Joanna B.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 708 KB

english, 2007

30

Muscle Metabolic Modulation by Chronic Hypoxia

Gosker, Harry R., Schols, Annemie M. W. J.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 55 KB

english, 2007

31

Metabolic Regulatory Network Alterations in Response to Acute Cold Stress and Ginsenoside Intervention

Wang, Xiaoyan, Su, Mingming, Qiu, Yunping, Ni, Yan, Zhao, Tie, Zhou, Mingmei, Zhao, Aihua, Yang, Shengli, Zhao, Liping, Jia, Wei

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 282 KB

english, 2007

32

Selective Enrichment of Tryptophan-Containing Peptides from Protein Digests Employing a Reversible Derivatization with Malondialdehyde and Solid-Phase Capture on Hydrazide Beads

Foettinger, Alexandra, Leitner, Alexander, Lindner, Wolfgang

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 166 KB

english, 2007

33

Exploring Novel Function of Yeast Ssa1/2p by Quantitative Profiling Proteomics Using NanoESI-LC−MS/MS

Matsumoto, Rena, Nam, Hyung Wook, Agrawal, Ganesh Kumar, Kim, Yu Sam, Iwahashi, Hitoshi, Rakwal, Randeep

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 448 KB

english, 2007

34

Proteomic Analysis of a Membrane Skeleton Fraction from Human Liver

He, Jintang, Liu, Yashu, He, Sizhi, Wang, Qingsong, Pu, Hai, Ji, Jianguo

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 699 KB

english, 2007

35

Contribution of Protein Fractionation to Depth of Analysis of the Serum and Plasma Proteomes

Faca, Vitor, Pitteri, Sharon J., Newcomb, Lisa, Glukhova, Veronika, Phanstiel, Doug, Krasnoselsky, Alexei, Zhang, Qing, Struthers, Jason, Wang, Hong, Eng, Jimmy, Fitzgibbon, Matt, McIntosh, Martin, Ha

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 544 KB

english, 2007

36

Fesselin is a Natively Unfolded Protein

Khaymina, Svetlana S., Kenney, John M., Schroeter, Mechthild M., Chalovich, Joseph M.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 201 KB

english, 2007

37

Dehydration Propensity of Order−Disorder Intermediate Regions in Soluble Proteins

Pietrosemoli, Natalia, Crespo, Alejandro, Fernández, Ariel

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 841 KB

english, 2007

38

Selective Modification of Trp19 in β-Lactoglobulin by a New Diazo Fluorescence Probe

Bao, Zhijuan, Wang, Shujuan, Shi, Wen, Dong, Suying, Ma, Huimin

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 195 KB

english, 2007

39

Research Profile: The proteomics of aging

Willis, Randall C

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 178 KB

english, 2007

40

Amphibian Skin Secretomics: Application of Parallel Quadrupole Time-of-Flight Mass Spectrometry and Peptide Precursor cDNA Cloning to Rapidly Characterize the Skin Secretory Peptidome of Phyllomedusa hypochondrialis azurea: Discovery of a Novel Peptide Family, the Hyposins

Thompson, Alan Hunter, Bjourson, Anthony John, Orr, David Francis, Shaw, Chris, McClean, Stephen

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 542 KB

english, 2007

41

Serum Proteome of Leprosy Patients Undergoing Erythema Nodosum Leprosum Reaction: Regulation of Expression of the Isoforms of Haptoglobin

Gupta, Nishma, Shankernarayan, Nallakandy P., Dharmalingam, Kuppamuthu

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 612 KB

english, 2007

42

Metal-Chelating Plastic MALDI (pMALDI) Chips for the Enhancement of Phosphorylated-Peptide/Protein Signals

Ibáñez, Alfredo J., Muck, Alexander, Svatoš, Aleš

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 274 KB

english, 2007

43

Improving Sample Treatment for In-Solution Protein Identification by Peptide Mass Fingerprint Using Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry

Santos, H. M., Rial-Otero, R., Fernandes, L., Vale, G., Rivas, M. G., Moura, I., Capelo, J. L.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 204 KB

english, 2007

44

Proteomic Analysis of Cell Envelope from Staphylococcus xylosus C2a, a Coagulase-Negative Staphylococcus

Planchon, Stella, Chambon, Christophe, Desvaux, Mickaël, Chafsey, Ingrid, Leroy, Sabine, Talon, Régine, Hébraud, Michel

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 608 KB

english, 2007

45

Informatics Strategies for Large-Scale Novel Cross-Linking Analysis

Anderson, Gordon A., Tolic, Nikola, Tang, Xiaoting, Zheng, Chunxiang, Bruce, James E.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 497 KB

english, 2007

46

Reliable Detection of Deamidated Peptides from Lens Crystallin Proteins Using Changes in Reversed-Phase Elution Times and Parent Ion Masses

Dasari, Surendra, Wilmarth, Phillip A., Rustvold, D. Leif, Riviere, Michael A., Nagalla, Srinivasa R., David, Larry L.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 207 KB

english, 2007

47

Proteomics Projects: HUPO Proteome Biology of Stem Cells Initiative

Cottingham, Katie

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 92 KB

english, 2007

48

Characterization of Post-Translational Modifications of Histone H2B-Variants Isolated from Arabidopsis thaliana

Bergmüller, Eveline, Gehrig, Peter M., Gruissem, Wilhelm

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 470 KB

english, 2007

49

Proteomic Parsimony through Bipartite Graph Analysis Improves Accuracy and Transparency

Zhang, Bing, Chambers, Matthew C., Tabb, David L.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 405 KB

english, 2007

50

New Products

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 171 KB

english, 2007

51

Statistically Inferring Protein−Protein Associations with Affinity Isolation LC−MS/MS Assays

Sharp, Julia L., Anderson, Kevin K., Hurst, Gregory B., Daly, Don S., Pelletier, Dale A., Cannon, William R., Auberry, Deanna L., Schmoyer, Denise D., Hayes McDonald, W., White, Amanda M., Hooker, Bri

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 163 KB

english, 2007

52

An Inflammatory Arthritis-Associated Metabolite Biomarker Pattern Revealed by 1 H NMR Spectroscopy

Weljie, Aalim M., Dowlatabadi, Reza, Miller, B. Joan, Vogel, Hans J., Jirik, Frank R.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 594 KB

english, 2007

53

14-3-3 Expression in Denervated Hippocampus after Entorhinal Cortex Lesion Assessed by Culture-Derived Isotope Tags in Quantitative Proteomics

Sihlbom, Carina, Wilhelmsson, Ulrika, Li, Lizhen, Nilsson, Carol L., Pekny, Milos

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 928 KB

english, 2007

54

On the Predictability of Protein Database Search Complexity and Its Relevance to Optimization of Distributed Searches

Deciu, Cosmin, Sun, Jun, Wall, Mark A.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 230 KB

english, 2007

55

Design of Recombinant Antibody Microarrays for Serum Protein Profiling: Targeting of Complement Proteins

Ingvarsson, Johan, Larsson, Anette, Sjöholm, Anders G., Truedsson, Lennart, Jansson, Bo, Borrebaeck, Carl A. K., Wingren, Christer

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 637 KB

english, 2007

56

Identification of Potential Pluripotency Determinants for Human Embryonic Stem Cells Following Proteomic Analysis of Human and Mouse Fibroblast Conditioned Media

Prowse, Andrew B. J., McQuade, Leon R., Bryant, Katherine J., Marcal, Helder, Gray, Peter P.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 134 KB

english, 2007