Volume 6; Issue 2

Journal of Proteome Research

Volume 6; Issue 2

1

Head-to-Head Comparison of Serum Fractionation Techniques

Whiteaker, Jeffrey R., Zhang, Heidi, Eng, Jimmy K., Fang, Ruihua, Piening, Brian D., Feng, Li-Chia, Lorentzen, Travis D., Schoenherr, Regine M., Keane, John F., Holzman, Ted

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 256 KB

english, 2007

2

Proteome Analysis of Serum from Type 2 Diabetics with Nephropathy

Kim, Hyun-Jung, Cho, Eun-Hee, Yoo, Ji-Hye, Kim, Pan-Kyeom, Shin, Jun-Seop, Kim, Mi-Ryung, Kim, Chan-Wha

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 645 KB

english, 2007

3

Evaluation of Endogenous Plasma Peptide Extraction Methods for Mass Spectrometric Biomarker Discovery

Aristoteli, Lina P., Molloy, Mark P., Baker, Mark S.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 393 KB

english, 2007

4

An iTRAQ-Based Quantitative Analysis To Elaborate the Proteomic Response of Nostoc sp. PCC 7120 under N2 Fixing Conditions

Stensjö, Karin, Ow, Saw Yen, Barrios-Llerena, Martin E., Lindblad, Peter, Wright, Phillip C.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 463 KB

english, 2007

5

Rapid Enrichment of Phosphopeptides from Tryptic Digests of Proteins Using Iron Oxide Nanocomposites of Magnetic Particles Coated with Zirconia as the Concentrating Probes

Lo, Chun-Yuen, Chen, Wei-Yu, Chen, Cheng-Tai, Chen, Yu-Chie

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 282 KB

english, 2007

6

iTRAQ Is a Useful Method To Screen for Membrane-Bound Proteins Differentially Expressed in Human Natural Killer Cell Types

Lund, Troy C., Anderson, Lorraine B., McCullar, Valarie, Higgins, LeeAnn, Yun, Gong H., Grzywacz, Bartek, Verneris, Michael R., Miller, Jeffrey S.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 314 KB

english, 2007

7

From Exogenous to Endogenous: The Inevitable Imprint of Mass Spectrometry in Metabolomics

Want, Elizabeth J., Nordström, Anders, Morita, Hirotoshi, Siuzdak, Gary

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 321 KB

english, 2007

8

Combination of Abundant Protein Depletion and Multi-Lectin Affinity Chromatography (M-LAC) for Plasma Protein Biomarker Discovery

Plavina, Tatiana, Wakshull, Eric, Hancock, William S., Hincapie, Marina

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 173 KB

english, 2007

9

Rapid and Noninvasive Metabonomic Characterization of Inflammatory Bowel Disease

Marchesi, Julian R., Holmes, Elaine, Khan, Fatima, Kochhar, Sunil, Scanlan, Pauline, Shanahan, Fergus, Wilson, Ian D., Wang, Yulan

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 192 KB

english, 2007

10

Proteomics Approaches to Study Genetic and Metabolic Disorders

Gloerich, Jolein, Wevers, Ron A., Smeitink, Jan A. M., van Engelen, Baziel G., van den Heuvel, Lambert P.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 326 KB

english, 2007

11

Analytical Strategies in Metabonomics

Lenz, Eva Maria, Wilson, Ian D.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 654 KB

english, 2007

12

Comprehensive Peptidome Analysis of Mouse Livers by Size Exclusion Chromatography Prefractionation and NanoLC−MS/MS Identification

Hu, Lianghai, Li, Xin, Jiang, Xinning, Zhou, Houjiang, Jiang, Xiaogang, Kong, Liang, Ye, Mingliang, Zou, Hanfa

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 360 KB

english, 2007

13

Environmental Metabolomics: A SWOT Analysis (Strengths, Weaknesses, Opportunities, and Threats)

Miller, Marion G.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 98 KB

english, 2007

14

Tumour Metabolomics in Animal Models of Human Cancer

Griffin, Julian L., Kauppinen, Risto A.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 291 KB

english, 2007

15

Improvement of Recovery and Repeatability in Liquid Chromatography−Mass Spectrometry Analysis of Peptides

van Midwoud, Paul M., Rieux, Laurent, Bischoff, Rainer, Verpoorte, Elisabeth, Niederländer, Harm A. G.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 207 KB

english, 2007

16

Novel Application of Reversed-Phase UPLC-oaTOF-MS for Lipid Analysis in Complex Biological Mixtures: A New Tool for Lipidomics

Rainville, Paul D., Stumpf, Chris L., Shockcor, John P., Plumb, Robert S., Nicholson, Jeremy K.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 248 KB

english, 2007

17

Chemometrics in Metabonomics

Trygg, Johan, Holmes, Elaine, Lundstedt, Torbjörn

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 451 KB

english, 2007

18

Technical, Experimental, and Biological Variations in Isobaric Tags for Relative and Absolute Quantitation (iTRAQ)

Gan, Chee Sian, Chong, Poh Kuan, Pham, Trong Khoa, Wright, Phillip C.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 198 KB

english, 2007

19

Proteomic Identification of Biomarkers in the Cerebrospinal Fluid (CSF) of Astrocytoma Patients

Khwaja, Fatima W., Reed, Matthew S., Olson, Jeffrey J., Schmotzer, Brian J., Gillespie, G. Yancey, Guha, Abhijit, Groves, Morris D., Kesari, Santosh, Pohl, Jan, Van Meir, Erwin G.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 2.30 MB

english, 2007

20

A Model for the Recognition of Protein Kinases Based on the Entropy of 3D van der Waals Interactions

González-Díaz, Humberto, Saiz-Urra, Liane, Molina, Reinaldo, Santana, Lourdes, Uriarte, Eugenio

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 251 KB

english, 2007

21

MyriMatch: Highly Accurate Tandem Mass Spectral Peptide Identification by Multivariate Hypergeometric Analysis

Tabb, David L., Fernando, Christopher G., Chambers, Matthew C.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 200 KB

english, 2007

22

Analytical Aspects of Plant Metabolite Profiling Platforms: Current Standings and Future Aims

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 557 KB

english, 2007

23

Interaction Simulation of hERG K + Channel with Its Specific BeKm-1 Peptide: Insights into the Selectivity of Molecular Recognition

Yi, Hong, Cao, Zhijian, Yin, Shijin, Dai, Chao, Wu, Yingliang, Li, Wenxin

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 931 KB

english, 2007

24

Two-Dimensional Fluorescence Difference Gel Electrophoresis Analysis of Spermatogenesis in the Rat

Rolland, Antoine D., Evrard, Bertrand, Guitton, Nathalie, Lavigne, Régis, Calvel, Pierre, Couvet, Morgane, Jégou, Bernard, Pineau, Charles

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 826 KB

english, 2007

25

Proteomic Investigation of Glioblastoma Cell Lines Treated with Wild-Type p53 and Cytotoxic Chemotherapy Demonstrates an Association between Galectin-1 and p53 Expression

Puchades, Maja, Nilsson, Carol L., Emmett, Mark R., Aldape, Kenneth D., Ji, Yongjie, Lang, Frederick F., Liu, Ta-Jen, Conrad, Charles A.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 1.53 MB

english, 2007

26

Identification of Platinum-Resistance Associated Proteins through Proteomic Analysis of Human Ovarian Cancer Cells and Their Platinum-Resistant Sublines

Yan, Xue-dong, Pan, Ling-ya, Yuan, Ye, Lang, Jing-he, Mao, Ning

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 548 KB

english, 2007

27

A Synthetic Protein Approach toward Accurate Mass Spectrometric Quantification of Component Stoichiometry of Multiprotein Complexes

Kito, Keiji, Ota, Kazuhisa, Fujita, Tomoko, Ito, Takashi

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 469 KB

english, 2007

28

Overexpression of Biglycan in the Heart of Transgenic Mice: An Antibody Microarray Study

Bereczki, Erika, Gonda, Szilvia, Csont, Tamás, Korpos, Eva, Zvara, Agnes, Ferdinandy, Péter, Sántha, Miklós

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 382 KB

english, 2007

29

Metabonomics in Pharmaceutical Discovery and Development

Robertson, Donald G., Reily, Michael D., Baker, J. David

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 319 KB

english, 2007

30

A New Fast Method for nanoLC−MALDI-TOF/TOF−MS Analysis Using Monolithic Columns for Peptide Preconcentration and Separation in Proteomic Studies

Marcus, Katrin, Schäfer, Heike, Klaus, Stefan, Bunse, Christian, Swart, Remco, Meyer, Helmut E.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 265 KB

english, 2007

31

Nutritional Metabonomics: Applications and Perspectives

Rezzi, Serge, Ramadan, Ziad, Fay, Laurent B., Kochhar, Sunil

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 569 KB

english, 2007

32

Circulating Human Monocytes in the Acute Coronary Syndrome Express a Characteristic Proteomic Profile

Barderas, María G., Tuñón, José, Dardé, Verónica M., De la Cuesta, Fernando, Durán, María C., Jiménez-Nácher, José J., Tarín, Nieves, López-Bescós, Lorenzo, Egido, Jesús, Vivanco, Fernando

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 745 KB

english, 2007

33

Proteomic Profiling of Intact Proteins Using WAX-RPLC 2-D Separations and FTICR Mass Spectrometry

Sharma, Seema, Simpson, David C., Tolić, Nikola, Jaitly, Navdeep, Mayampurath, Anoop M., Smith, Richard D., Paša-Tolić, Ljiljana

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 401 KB

english, 2007

34

Identification of Cellular Interaction Partners of the Influenza Virus Ribonucleoprotein Complex and Polymerase Complex Using Proteomic-Based Approaches

Mayer, Daniel, Molawi, Kaaweh, Martínez-Sobrido, Luis, Ghanem, Alexander, Thomas, Stefan, Baginsky, Sacha, Grossmann, Jonas, García-Sastre, Adolfo, Schwemmle, Martin

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 849 KB

english, 2007

35

The Phosphorus Source Phytate Changes the Composition of the Cell Wall Proteome in B acillus subtilis

Antelmann, Haike, Töwe, Stefanie, Albrecht, Dirk, Hecker, Michael

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 627 KB

english, 2007

36

Proteomic Analysis of Tyrosine Phosphorylations in Vascular Endothelial Growth Factor- and Reactive Oxygen Species-Mediated Signaling Pathway

Kim, Young Mee, Song, Eun Joo, Seo, Jawon, Kim, Hee-Jung, Lee, Kong-Joo

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 703 KB

english, 2007

37

Structural and Functional Analysis of Hypothetical Proteins in Mouse Hippocampus from Two-Dimensional Gel Electrophoresis

Afjehi-Sadat, Leila, Yang, Jae-Won, Pollak, Arnold, Kim, Dae-Won, Choi, Soo-Young, Lubec, Gert

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 728 KB

english, 2007

38

Protein Family Classification with Partial Least Squares

Opiyo, Stephen O., Moriyama, Etsuko N.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 291 KB

english, 2007

39

Identification of Tumor Antigens in Human Lung Squamous Carcinoma by Serological Proteome Analysis

Yang, Fang, Xiao, Zhi-qiang, Zhang, Xiu-zhi, Li, Cui, Zhang, Peng-fei, Li, Mao-yu, Chen, Ying, Zhu, Ge-qin, Sun, Yi, Liu, Ying-fu, Chen, Zhu-chu

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 465 KB

english, 2007

40

Automating MALDI Sample Plate Loading

Andersson, Tomas, Johansson, Mattias, Bolmsjö, Gunnar, James, Peter

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 318 KB

english, 2007

41

TOOLbox: SpectConnect for metabolomics | ProteomeCommons.org IO Framework | tYNA for comparative interactomics | IntNetDB for protein-protein interactions | Currents: An LC column for ultratrace detection of peptides | Kinetic proteome study of yeast | Proteins that bind PrPC | Ion/ion reactions for top-down proteomics | Candidate biomarkers for the diagnosis of kidney cancer

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 364 KB

english, 2007

42

Profiling the Membrane Proteome of Shewanella oneidensis MR-1 with New Affinity Labeling Probes

Tang, Xiaoting, Yi, Wei, Munske, Gerhard R., Adhikari, Devi P., Zakharova, Natalia L., Bruce, James E.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 511 KB

english, 2007

43

Characterization of IQGAP1-Containing Complexes in NK-Like Cells: Evidence for Rac 2 and RACK1 Association during Homotypic Adhesion

Meng, Xiaobo, Krokhin, Oleg, Cheng, Keding, Ens, Werner, Wilkins, John A.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 237 KB

english, 2007

44

Identification of Secreted Proteins during Skeletal Muscle Development

Chan, X'avia C. Y., McDermott, John C., Siu, K. W. Michael

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 1.25 MB

english, 2007

45

Halothane Binding Proteome in Human Brain Cortex

Pan, Jonathan Z., Xi, Jin, Tobias, John W., Eckenhoff, Maryellen F., Eckenhoff, Roderic G.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 781 KB

english, 2007

46

Latent Periodicity of Protein Families, Identified with the Indel-Aware Algorithm

Laskin, Andrew A., Skryabin, Konstantin G., Korotkov, Eugene V.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 182 KB

english, 2007

47

Quantitative Proteomic and Microarray Analysis of the Archaeon M ethanosarcina acetivorans Grown with Acetate versus Methanol

Li, Lingyun, Li, Qingbo, Rohlin, Lars, Kim, UnMi, Salmon, Kirsty, Rejtar, Tomas, Gunsalus, Robert P., Karger, Barry L., Ferry, James G.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 300 KB

english, 2007

48

Proteome Analysis of Chloroplast mRNA Processing and Degradation

Baginsky, Sacha, Grossmann, Jonas, Gruissem, Wilhelm

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 238 KB

english, 2007

49

Sonoreactor-Based Technology for Fast High-Throughput Proteolytic Digestion of Proteins

Rial-Otero, R., Carreira, R. J., Cordeiro, F. M., Moro, A. J., Fernandes, L., Moura, I., Capelo, J. L.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 109 KB

english, 2007

50

Dual-Source Mass Spectrometer with MALDI-LIT-ESI Configuration

Smith, Scott A., Blake, Thomas A., Ifa, Demian R., Cooks, R. Graham, Ouyang, Zheng

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 397 KB

english, 2007

51

The Metabolic Window into Systems Biology

Nicholson, Jeremy K., Holmes, Elaine, Lindon, John C.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 73 KB

english, 2007

52

New Products

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 138 KB

english, 2007

53

Research Profile: Serum fractionation techniques are put to the test

Cottingham, Katie

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 79 KB

english, 2007

54

Research Profile: Metabonomics of inflammatory bowel disease

Cottingham, Katie

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 116 KB

english, 2007

55

Proteomics Projects: Metabolomics Standards Initiative: standards under construction

Cottingham, Katie

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 45 KB

english, 2007

56

Government and Society: Government and Society: U.S. FDA extends comment period on proposed algorithm regulation | NIH releases dbGaP

Cottingham, Katie

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 45 KB

english, 2007

57

Meetings

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 75 KB

english, 2007