Volume 6; Issue 11

Journal of Proteome Research

Volume 6; Issue 11

1

Profiling of Endogenous Peptides in Human Synovial Fluid by NanoLC−MS: Method Validation and Peptide Identification

Kamphorst, Jurre J., van der Heijden, Rob, DeGroot, Jeroen, Lafeber, Floris P. J. G., Reijmers, Theo H., van El, Benno, Tjaden, Ubbo R., van der Greef, Jan, Hankemeier, Thomas

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 567 KB

english, 2007

2

Proteomic Analysis Reveals Differences in Protein Expression in Spheroid versus Monolayer Cultures of Low-Passage Colon Carcinoma Cells

Gaedtke, Lars, Thoenes, Lilja, Culmsee, Carsten, Mayer, Barbara, Wagner, Ernst

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 563 KB

english, 2007

3

Characterization of Amyloid β Peptides in Cerebrospinal Fluid by an Automated Immunoprecipitation Procedure Followed by Mass Spectrometry

Portelius, Erik, Tran, Ai Jun, Andreasson, Ulf, Persson, Rita, Brinkmalm, Gunnar, Zetterberg, Henrik, Blennow, Kaj, Westman-Brinkmalm, Ann

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 172 KB

english, 2007

4

Preparation of Fe 3 O 4 @ZrO 2 Core−Shell Microspheres as Affinity Probes for Selective Enrichment and Direct Determination of Phosphopeptides Using Matrix-Assisted Laser Desorption Ionization Mass Spectrometry

Li, Yan, Leng, Taohua, Lin, Huaqing, Deng, Chunhui, Xu, Xiuqing, Yao, Ning, Yang, Pengyuan, Zhang, Xiangmin

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 501 KB

english, 2007

5

Searching Urinary Tumor Markers for Bladder Cancer Using a Two-Dimensional Differential Gel Electrophoresis (2D-DIGE) Approach

Orenes-Piñero, Esteban, Cortón, Marta, González-Peramato, Pilar, Algaba, Ferrán, Casal, Ignacio, Serrano, Alvaro, Sánchez-Carbayo, Marta

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 714 KB

english, 2007

6

The Tumor Suppressors p33ING1 and p33ING2 Interact with Alien in Vivo and Enhance Alien-Mediated Gene Silencing

Fegers, Inga, Kob, Robert, Eckey, Maren, Schmidt, Oliver, Goeman, Frauke, Papaioannou, Maria, Escher, Niko, von Eggeling, Ferdinand, Melle, Christian, Baniahmad, Aria

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 457 KB

english, 2007

7

Bacterial Overgrowth Affects Urinary Proteome Analysis: Recommendation for Centrifugation, Temperature, Duration, and the Use of Preservatives during Sample Collection

Thongboonkerd, Visith, Saetun, Putita

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 925 KB

english, 2007

8

Currents: A bead-based kinase competition assay for chemical proteomics | Calcium phosphate precipitation and IMAC for phosphopeptide enrichment | A new protein PTM: pyrophosphorylation | Proteomics with a PVDF membrane | Microfluidic 2D DIGE analyzer | Metabonomics for toxicity monitoring | TOOLbox: NetworKIN | myProMS | Chaorder assesses experimental bias | Glycan analysis

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 640 KB

english, 2007

9

A Strategic Fluorescence Labeling of d -Galactose/ d -Glucose-Binding Protein from Escherichia coli Helps to Shed Light on the Protein Structural Stability and Dynamics

Scognamiglio, Viviana, Scirè, Andrea, Aurilia, Vincenzo, Staiano, Maria, Crescenzo, Roberta, Palmucci, Cristina, Bertoli, Enrico, Rossi, Mosè, Tanfani, Fabio, D'Auria, Sabato

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 477 KB

english, 2007

10

Proteomics Projects: HuPI focuses on protein interactions

Cottingham, Katie

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 105 KB

english, 2007

11

Proteomic Identification of PKC-Mediated Expression of 20E-Induced Protein in Drosophila melanogaster

Sun, Yaning, An, Shiheng, Henrich, Vincent C., Sun, Xiaoping, Song, Qisheng

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 802 KB

english, 2007

12

Two-Dimensional Reversed-Phase × Ion-Pair Reversed-Phase HPLC: An Alternative Approach to High-Resolution Peptide Separation for Shotgun Proteome Analysis

Delmotte, Nathanaël, Lasaosa, Maria, Tholey, Andreas, Heinzle, Elmar, Huber, Christian G.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 436 KB

english, 2007

13

Proteomic Approach for Caudal Trauma-Induced Acute Phase Proteins Reveals That Creatine Kinase Is a Key Acute Phase Protein in Amphioxus Humoral Fluid

Gao, Yuan-yuan, Zhang, Dan-feng, Li, Hui, Liu, Runzhong, Zhuang, Zheng-hong, Li, Qi-fu, Wang, San-ying, Peng, Xuan-xian

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 580 KB

english, 2007

14

Comparative Analysis of the Protein Profiles from Primary Gastric Tumors and Their Adjacent Regions: MAWBP Could Be a New Protein Candidate Involved in Gastric Cancer

Zhang, Jun, Kang, Bin, Tan, Xiaohui, Bai, Zhigang, Liang, Yumei, Xing, Rui, Shao, Jianmin, Xu, Ningzhi, Wang, Rong, Liu, Siqi, Lu, Youyong

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 2.11 MB

english, 2007

15

Application of Fluorescence Difference Gel Electrophoresis Technology in Searching for Protein Biomarkers in Chick Myopia

Lam, Thomas C., Li, King-Kit, Lo, Samuel C. L., Guggenheim, Jeremy A., To, Chi Ho

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 1.04 MB

english, 2007

16

Cyanogen Bromide Peptides of the Fibrillar Collagens I, III, and V and Their Mass Spectrometric Characterization: Detection of Linear Peptides, Peptide Glycosylation, and Cross-Linking Peptides Involved in Formation of Homo- and Heterotypic Fibrils

Henkel, Werner, Dreisewerd, Klaus

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 5.72 MB

english, 2007

17

Exploring the Platelet Proteome via Combinatorial, Hexapeptide Ligand Libraries

Guerrier, Luc, Claverol, Stephane, Fortis, Frederic, Rinalducci, Sara, Timperio, Anna Maria, Antonioli, Paolo, Jandrot-Perrus, Martine, Boschetti, Egisto, Righetti, Pier Giorgio

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 457 KB

english, 2007

18

New Products

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 147 KB

english, 2007

19

Identification of Ubiquitin Target Proteins Using Cell-Based Arrays

Zhou, Tao, Liang, Bing, Su, Gui-Ying, Gong, Wei-Li, Li, Hui-Yan, Tian, Li-Feng, He, Kun, Zhao, Jie, Man, Jiang-Hong, Li, Tao, Li, Wei-Hua, Zhang, Zhi-Yi, Wang, Chen-Hui, Li, Ai-Ling, Liu, Hui, Pan, Xi

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 877 KB

english, 2007

20

COMET and the Challenge of Drug Safety Screening

Nicholson, Jeremy, Keun, Hector, Ebbels, and Tim

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 95 KB

english, 2007

21

Research Profile: Proteome changes in HIV-associated dementia

Cassiday, Laura

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 120 KB

english, 2007

22

Proteomic Identification of the Cerebral Cavernous Malformation Signaling Complex

Hilder, Thomas L., Malone, Michael H., Bencharit, Sompop, Colicelli, John, Haystead, Timothy A., Johnson, Gary L., Wu, Christine C.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 689 KB

english, 2007

23

Improved Titanium Dioxide Enrichment of Phosphopeptides from HeLa Cells and High Confident Phosphopeptide Identification by Cross-Validation of MS/MS and MS/MS/MS Spectra

Yu, Li-Rong, Zhu, Zhongyu, Chan, King C., Issaq, Haleem J., Dimitrov, Dimiter S., Veenstra, Timothy D.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 310 KB

english, 2007

24

Cerebrospinal Fluid Proteomic Profiling of HIV-1-Infected Patients with Cognitive Impairment

Rozek, Wojciech, Ricardo-Dukelow, Mary, Holloway, Sondra, Gendelman, Howard E., Wojna, Valerie, Melendez, Loyda M., Ciborowski, Pawel

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 860 KB

english, 2007

25

Optimization of MALDI-TOF MS Detection for Enhanced Sensitivity of Affinity-Captured Proteins Spanning a 100 kDa Mass Range

Gatlin-Bunai, Christine L., Cazares, Lisa H., Cooke, William E., Semmes, Oliver J., Malyarenko, Dariya I.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 276 KB

english, 2007

26

Glycomics of Proteoglycan Biosynthesis in Murine Embryonic Stem Cell Differentiation

Nairn, Alison V., Kinoshita-Toyoda, Akiko, Toyoda, Hidenao, Xie, Jin, Harris, Kyle, Dalton, Stephen, Kulik, Michael, Pierce, J. Michael, Toida, Toshihiko, Moremen, Kelley W., Linhardt, Robert J.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 723 KB

english, 2007

27

Meetings

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 72 KB

english, 2007

28

Mass Spectral Compatibility of Four Proteomics Stains

Ball, Malcolm S., Karuso, Peter

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 236 KB

english, 2007

29

Proteomic Analysis of Peritoneal Dialysate Fluid in Patients with Different Types of Peritoneal Membranes

Sritippayawan, Suchai, Chiangjong, Wararat, Semangoen, Theptida, Aiyasanon, Nipa, Jaetanawanitch, Parnthip, Sinchaikul, Supachok, Chen, Shui-Tein, Vasuvattakul, Somkiat, Thongboonkerd, Visith

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 201 KB

english, 2007

30

Applying a Targeted Label-Free Approach Using LC−MS AMT Tags to Evaluate Changes in Protein Phosphorylation Following Phosphatase Inhibition

Yang, Feng, Jaitly, Navdeep, Jayachandran, Hemalatha, Luo, Quanzhou, Monroe, Matthew E., Du, Xiuxia, Gritsenko, Marina A., Zhang, Rui, Anderson, David J., Purvine, Samuel O., Adkins, Joshua N., Moore,

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 221 KB

english, 2007

31

Government & Society: CIHR requires open access

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 105 KB

english, 2007

32

On-Line LC−MS Approach Combining Collision-Induced Dissociation (CID), Electron-Transfer Dissociation (ETD), and CID of an Isolated Charge-Reduced Species for the Trace-Level Characterization of Proteins with Post-Translational Modifications

Wu, Shiaw-Lin, Hühmer, Andreas F. R., Hao, Zhiqi, Karger, Barry L.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 2.20 MB

english, 2007

33

Essential Dynamics of Helices Provide a Functional Classification of EF-Hand Proteins

Capozzi, Francesco, Luchinat, Claudio, Micheletti, Cristian, Pontiggia, Francesco

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 567 KB

english, 2007

34

Proteomic Analysis of High-Grade Dysplastic Cervical Cells Obtained from ThinPrep Slides Using Laser Capture Microdissection and Mass Spectrometry

Gu, Ye, Wu, Shiaw-Lin, Meyer, Jane L., Hancock, William S., Burg, Lawrence J., Linder, James, Hanlon, David W., Karger, Barry L.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 686 KB

english, 2007

35

A New Approach for Mapping Sialylated N -Glycosites in Serum Proteomes

Ghesquière, Bart, Buyl, Lien, Demol, Hans, Van Damme, Jozef, Staes, An, Timmerman, Evy, Vandekerckhove, Joël, Gevaert, Kris

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 220 KB

english, 2007

36

Integration of Residue-Specific Acid Cleavage into Proteomic Workflows

Swatkoski, Steven, Gutierrez, Peter, Ginter, Joy, Petrov, Alexey, Dinman, Jonathan D., Edwards, Nathan, Fenselau, Catherine

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 133 KB

english, 2007

37

Proteome Changes Induced by Knock-Down of the Deubiquitylating Enzyme HAUSP/USP7

Kessler, Benedikt M., Fortunati, Elisabetta, Melis, Monique, Pals, Cornelieke E. G. M., Clevers, Hans, Maurice, Madelon M.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 758 KB

english, 2007

38

Research Profile: Who really needs a cervical biopsy?

Cottingham, Katie

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 124 KB

english, 2007

39

Development of a Highly Sensitive, High-Throughput, Mass Spectrometry-Based Assay for Rat Procollagen Type-I N-Terminal Propeptide (PINP) To Measure Bone Formation Activity

Han, Bomie, Copeland, Marci, Geiser, Andrew G., Hale, Laura V., Harvey, Anita, Ma, Yanfei L., Powers, Connie S., Sato, Masahiko, You, Jinsam, Hale, John E.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 301 KB

english, 2007

40

Organellar Proteomics of Human Platelet Dense Granules Reveals That 14-3-3ζ Is a Granule Protein Related to Atherosclerosis

Hernández-Ruiz, Laura, Valverde, Federico, Jimenez-Nuñez, Maria D., Ocaña, Esther, Sáez-Benito, Ana, Rodríguez-Martorell, Javier, Bohórquez, Juan-Carlos, Serrano, Aurelio, Ruiz, Felix A.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 531 KB

english, 2007

41

iTRAQ Reagent-Based Quantitative Proteomic Analysis on a Linear Ion Trap Mass Spectrometer

Griffin, Timothy J., Xie, Hongwei, Bandhakavi, Sricharan, Popko, Jonathan, Mohan, Archana, Carlis, John V., Higgins, LeeAnn

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 240 KB

english, 2007

42

Specific MALDI Imaging and Profiling for Biomarker Hunting and Validation: Fragment of the 11S Proteasome Activator Complex, Reg Alpha Fragment, Is a New Potential Ovary Cancer Biomarker

Lemaire, Remi, Ait Menguellet, Sonia, Stauber, Jonathan, Marchaudon, Valerie, Lucot, Jean-Philippe, Collinet, Pierre, Farine, Marie-Odile, Vinatier, Denis, Day, Robert, Ducoroy, Patrick, Salzet, Miche

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 1.46 MB

english, 2007

43

Method Development of Efficient Protein Extraction in Bone Tissue for Proteome Analysis J. Proteome Res. 2007 , 6 , 2287−2294.

Jiang, Xiaogang, Ye, Mingliang, Jiang, Xinning, Liu, Guangpeng, Feng, Shun, Cui, Lei, Zou, Hanfa

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 50 KB

english, 2007

44

Human Metabolic Phenotypes Link Directly to Specific Dietary Preferences in Healthy Individuals

Rezzi, Serge, Ramadan, Ziad, Martin, François-Pierre J., Fay, Laurent B., van Bladeren, Peter, Lindon, John C., Nicholson, Jeremy K., Kochhar, Sunil

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 390 KB

english, 2007

45

Differential Recovery of Peptides from Sample Tubes and the Reproducibility of Quantitative Proteomic Data

Bark, Steven J., Hook, Vivian

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 274 KB

english, 2007

46

Comparative Proteome Profiling and Functional Analysis of Chronic Myelogenous Leukemia Cell Lines

Fontana, Simona, Alessandro, Riccardo, Barranca, Marilisa, Giordano, Margherita, Corrado, Chiara, Zanella-Cleon, Isabelle, Becchi, Michel, Kohn, Elise C., De Leo, Giacomo

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 760 KB

english, 2007

47

Experimental Approach for Assessing the Outcome Accuracy of Antibody Microarray Experiments

Gu, Qiang, Sivanandam, Thamil Mani, Haymore, Jessica

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 390 KB

english, 2007

48

Research Profile: A molecular picture of chocoholics

Perkel, Jeffrey M.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 164 KB

english, 2007

49

Prediction and Classification of Drug Toxicity Using Probabilistic Modeling of Temporal Metabolic Data: The Consortium on Metabonomic Toxicology Screening Approach

Ebbels, Timothy M. D., Keun, Hector C., Beckonert, Olaf P., Bollard, Mary E., Lindon, John C., Holmes, Elaine, Nicholson, Jeremy K.

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 468 KB

english, 2007

50

“Turnover Proteome” of Human Atrial Trabeculae

Lampert, Florian M., Matt, Peter, Grapow, Martin, Lefkovits, Ivan, Zerkowski, Hans-Reinhard, Grussenmeyer, Thomas

Journal:

Journal of Proteome Research

Année:

2007

Langue:

english

Fichier:

PDF, 619 KB

english, 2007