Volume 5; Issue 9

Journal of Proteome Research

Volume 5; Issue 9

1

Peptidomics for Cancer Diagnosis: Present and Future

Diamandis, Eleftherios P.

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 58 KB

english, 2006

2

Mass Spectrometry Reveals Specific and Global Molecular Transformations during Viral Infection

Go, Eden P., Wikoff, William R., Shen, Zhouxin, O'Maille, Grace, Morita, Hirotoshi, Conrads, Thomas P., Nordstrom, Anders, Trauger, Sunia A., Uritboonthai, Wilasinee, Lucas, David A.

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 388 KB

english, 2006

3

Interaction of Zonula Occludens-1 (ZO-1) with α-Actinin-4: Application of Functional Proteomics for Identification of PDZ Domain-Associated Proteins

Chen, Vincent C., Li, Xinbo, Perreault, Hélène, Nagy, James I.

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 1.74 MB

english, 2006

4

Optimized Peptide Separation and Identification for Mass Spectrometry Based Proteomics via Free-Flow Electrophoresis

Malmström, Johan, Lee, Hookeun, Nesvizhskii, Alexey I., Shteynberg, David, Mohanty, Sonali, Brunner, Erich, Ye, Mingliang, Weber, Gerhard, Eckerskorn, Christoph, Aebersold, Ruedi

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 356 KB

english, 2006

5

Identification and Confirmation of Increased Fibrinopeptide A Serum Protein Levels in Gastric Cancer Sera by Magnet Bead Assisted MALDI-TOF Mass Spectrometry

Ebert, Matthias P. A., Niemeyer, Dagmar, Deininger, Sören O., Wex, Thomas, Knippig, Claudia, Hoffmann, Juliane, Sauer, Jörg, Albrecht, Wolfgang, Malfertheiner, Peter, Röcken, Christoph

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 334 KB

english, 2006

6

Identification of Protein Networks Associated with the PAK1−βPIX−GIT1−Paxillin Signaling Complex by Mass Spectrometry

Mayhew, Mark W., Webb, Donna J., Kovalenko, Mykola, Whitmore, Leanna, Fox, Jay W., Horwitz, Alan F.

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 329 KB

english, 2006

7

Rapid Validation of Protein Identifications with the Borderline Statistical Confidence via De Novo Sequencing and MS BLAST Searches

Wielsch, Natalie, Thomas, Henrik, Surendranath, Vineeth, Waridel, Patrice, Frank, Ari, Pevzner, Pavel, Shevchenko, Andrej

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 280 KB

english, 2006

8

Statistical Analysis of Membrane Proteome Expression Changes in Saccharomyces c erevisiae

Zybailov, Boris, Mosley, Amber L., Sardiu, Mihaela E., Coleman, Michael K., Florens, Laurence, Washburn, Michael P.

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 241 KB

english, 2006

9

Proteins Associated with Disease and Clinical Course in Pancreas Cancer: A Proteomic Analysis of Plasma in Surgical Patients

Lin, Yiing, Goedegebuure, Peter S., Tan, Marcus C. B., Gross, Julia, Malone, James P., Feng, Sheng, Larson, Justin, Phommaly, Chanpheng, Trinkaus, Kathryn, Townsend, R. Reid, Linehan, David C.

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 483 KB

english, 2006

10

Metabonomics Study of Intestinal Fistulas Based on Ultraperformance Liquid Chromatography Coupled with Q-TOF Mass Spectrometry (UPLC/Q-TOF MS)

Yin, Peiyuan, Zhao, Xinjie, Li, Qiurong, Wang, Jiangshan, Li, Jieshou, Xu, Guowang

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 526 KB

english, 2006

11

Proteomic and Computational Analysis of Secreted Proteins with Type I Signal Peptides from the Antarctic Archaeon Methanococcoides b urtonii

Saunders, Neil F. W., Ng, Charmaine, Raftery, Mark, Guilhaus, Michael, Goodchild, Amber, Cavicchioli, Ricardo

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 212 KB

english, 2006

12

Identification of Marker Proteins for the Adulteration of Meat Products with Soybean Proteins by Multidimensional Liquid Chromatography−Tandem Mass Spectrometry †

Leitner, Alexander, Castro-Rubio, Florentina, Marina, Maria Luisa, Lindner, Wolfgang

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 145 KB

english, 2006

13

Proteomic Analysis of Human Whole and Parotid Salivas Following Stimulation by Different Tastes

Neyraud, Eric, Sayd, Thierry, Morzel, Martine, Dransfield, Eric

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 384 KB

english, 2006

14

Protein Bipartivity and Essentiality in the Yeast Protein−Protein Interaction Network

Estrada, Ernesto

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 546 KB

english, 2006

15

Venom Proteomes of Closely Related Sistrurus Rattlesnakes with Divergent Diets

Sanz, Libia, Gibbs, H. Lisle, Mackessy, Stephen P., Calvete, Juan J.

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 389 KB

english, 2006

16

Rapid Alteration of the Phosphoproteome in the Moss Phys comit rella p atens after Cytokinin Treatment

Heintz, Dimitri, Erxleben, Anika, High, Anthony A., Wurtz, Virginie, Reski, Ralf, Van Dorsselaer, Alain, Sarnighausen, Eric

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 417 KB

english, 2006

17

New Products

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 72 KB

english, 2006

18

Proteomics Projects: HUPO HLPP takes on a herculean task

Cottingham, Katie

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 54 KB

english, 2006

19

A Combined Shotgun and Multidimensional Proteomic Analysis of the Insoluble Subproteome of the Obligate Thermophile, Geobacillus t hermoleovorans T80

Graham, Robert Leslie James, O'Loughlin, S. Naomi, Pollock, Catherine E., Ternan, Nigel G., Weatherly, D. Brent, Jackson, Philip J., Tarleton, Rick L., McMullan, Geoff

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 524 KB

english, 2006

20

Protein Cross-Linking Analysis Using Mass Spectrometry, Isotope-Coded Cross-Linkers, and Integrated Computational Data Processing

Seebacher, Jan, Mallick, Parag, Zhang, Ning, Eddes, James S., Aebersold, Ruedi, Gelb, Michael H.

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 632 KB

english, 2006

21

Investigating the Dynamic Nature of the Interactions between Nuclear Proteins and Histones upon DNA Damage Using an Immobilized Peptide Chemical Proteomics Approach

Dirksen, Eef H. C., Pinkse, Martijn W. H., Rijkers, Dirk T. S., Cloos, Jacqueline, Liskamp, Rob M. J., Slijper, Monique, Heck, Albert J. R.

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 402 KB

english, 2006

22

Comparison of MS/MS Methods for Protein Identification from 2D-PAGE

Arrigoni, Giorgio, Fernandez, Celine, Holm, Cecilia, Scigelova, Michaela, James, Peter

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 178 KB

english, 2006

23

Semiautomated High-Sensitivity Profiling of Human Blood Serum Glycoproteins through Lectin Preconcentration and Multidimensional Chromatography/Tandem Mass Spectrometry

Madera, Milan, Mechref, Yehia, Klouckova, Iveta, Novotny, Milos V.

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 612 KB

english, 2006

24

Why can't we analyze a whole proteome by MS? | Finding palmitoyl proteins | Phosphoproteomics of a signal transduction pathway | A step towards proteomics on a chip | Dynamic proteomics of single cells | Cancer proteins are connected differently | TOOLbox: PROMPT for comparisons | msInspect | Rapid peptide identifications | MeMo for metabolomics data

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 191 KB

english, 2006

25

Glutamine-Binding Protein from Escherichia C oli Specifically Binds a Wheat Gliadin Peptide. 2. Resonance Energy Transfer Studies Suggest a New Sensing Approach for an Easy Detection of Wheat Gliadin

Staiano, Maria, Scognamiglio, Viviana, Mamone, Gianfranco, Rossi, Mauro, Parracino, Antonietta, Rossi, Mose', D'Auria, Sabato

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 148 KB

english, 2006

26

Zirconium Phosphonate-Modified Porous Silicon for Highly Specific Capture of Phosphopeptides and MALDI-TOF MS Analysis

Zhou, Houjiang, Xu, Songyun, Ye, Mingliang, Feng, Shun, Pan, Chensong, Jiang, Xiaogang, Li, Xin, Han, Guanghui, Fu, Yu, Zou, Hanfa

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 198 KB

english, 2006

27

Phyloproteomics: What Phylogenetic Analysis Reveals about Serum Proteomics

Abu-Asab, Mones, Chaouchi, Mohamed, Amri, Hakima

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 253 KB

english, 2006

28

Focused Proteomics in Post-Mortem Human Spinal Cord

Ekegren, Titti, Hanrieder, Jörg, Aquilonius, Sten-Magnus, Bergquist, Jonas

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 1.37 MB

english, 2006

29

Discovery and Identification of Potential Biomarkers in a Prospective Study of Chronic Lymphoid Malignancies Using SELDI-TOF−MS

Miguet, Laurent, Bogumil, Ralf, Decloquement, Philippe, Herbrecht, Raoul, Potier, Noelle, Mauvieux, Laurent, Van Dorsselaer, Alain

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 316 KB

english, 2006

30

Starvation Induces Phase-Specific Changes in the Proteome of Mouse Small Intestine

Lenaerts, Kaatje, Sokolović, Milka, Bouwman, Freek G., Lamers, Wouter H., Mariman, Edwin C., Renes, Johan

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 858 KB

english, 2006

31

Transgenomic Metabolic Interactions in a Mouse Disease Model: Interactions of Trichinella s piralis Infection with Dietary Lactobacillus p aracasei Supplementation

Martin, Francois-Pierre J., Verdu, Elena F., Wang, Yulan, Dumas, Marc-Emmanuel, Yap, Ivan K. S., Cloarec, Olivier, Bergonzelli, Gabriela E., Corthesy-Theulaz, Irene, Kochhar, Sunil, Holmes, Elaine, Li

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 392 KB

english, 2006

32

Proteomic Study of Plasma from Moderate Hypercholesterolemic Patients

Alonso-Orgaz, Sergio, Moreno, Laura, Macaya, Carlos, Rico, Luis, Mateos-Cáceres, Petra J., Sacristán, Daniel, Pérez-Vizcaíno, Francisco, Segura, Antonio, Tamargo, Juan, López-Farré, Antonio

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 363 KB

english, 2006

33

Research Profile: Sample handling washes proteins away

Cottingham, Katie

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 62 KB

english, 2006

34

Quantitative Profiling of Drug-Associated Proteomic Alterations by Combined 2-Nitrobenzenesulfenyl Chloride (NBS) Isotope Labeling and 2DE/MS Identification

Ou, Keli, Kesuma, Djohan, Ganesan, Kumaresan, Yu, Kun, Soon, Sou Yen, Lee, Suet Ying, Goh, Xin Pei, Hooi, Michelle, Chen, Wei, Jikuya, Hiroyuki, Ichikawa, Tetsuo, Kuyama, Hiroki, Matsuo, Ei-ichi, Nish

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 628 KB

english, 2006

35

Proteomic Analysis of Hypoxia/Ischemia-Induced Alteration of Cortical Development and Dopamine Neurotransmission in Neonatal Rat

Hu, Xiaoming, Rea, Harriett C., Wiktorowicz, John E., Perez-Polo, J. Regino

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 389 KB

english, 2006

36

Research Profile: Herbicides can alter crop proteomes

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 67 KB

english, 2006

37

Proteomic Analysis of Effect of Hyperthermia on Spermatogenesis in Adult Male Mice

Zhu, Ye-Fei, Cui, Yu-Gui, Guo, Xue-Jiang, Wang, Lei, Bi, Ye, Hu, Yan-Qiu, Zhao, Xin, Liu, Quan, Huo, Ran, Lin, Min, Zhou, Zuo-Min, Sha, Jia-Hao

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 1.19 MB

english, 2006

38

Creation of Allotypic Active Sites during Oxidative Stress

Mirzaei, Hamid, Regnier, Fred

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 489 KB

english, 2006

39

Proteomic Analysis of Root Meristems and the Effects of Acetohydroxyacid Synthase-Inhibiting Herbicides in the Root of Medicago Truncatula

Holmes, Peta, Farquharson, Ryan, Hall, Prudence J., Rolfe, Barry G.

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 449 KB

english, 2006

40

A Novel Approach of Protein Immobilization for Protein Chips Using an Oligo-Cysteine Tag

Ichihara, Teruhisa, Akada, Junko K., Kamei, Shuichi, Ohshiro, Saemi, Sato, Daisuke, Fujimoto, Masanori, Kuramitsu, Yasuhiro, Nakamura, Kazuyuki

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 585 KB

english, 2006

41

Identification of the SELDI ProteinChip Human Serum Retentate by Microcapillary Liquid Chromatography-Tandem Mass Spectrometry

Zhou, Ming, Prieto, DaRue A., Lucas, David A., Chan, King C., Issaq, Haleem J., Veenstra, Timothy D., Conrads, Thomas P.

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 385 KB

english, 2006

42

Identification of 14-3-3ε Substrates from Embryonic Murine Brain

Ballif, Bryan A., Cao, Zhongwei, Schwartz, Daniel, Carraway, Kermit L., Gygi, Steven P.

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 498 KB

english, 2006

43

Multi-Q: A Fully Automated Tool for Multiplexed Protein Quantitation

Lin, Wen-Ting, Hung, Wei-Neng, Yian, Yi-Hwa, Wu, Kun-Pin, Han, Chia-Li, Chen, Yet-Ran, Chen, Yu-Ju, Sung, Ting-Yi, Hsu, Wen-Lian

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 314 KB

english, 2006

44

An Integrated Proteomic Workflow for Two-Dimensional Differential Gel Electrophoresis and Robotic Spot Picking

Mahnke, Ryan C., Corzett, Todd H., McCutchen-Maloney, Sandra L., Chromy, Brett A.

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 1.09 MB

english, 2006

45

Research Profile: Proteomics of starvation

Cottingham, Katie

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 72 KB

english, 2006

46

Alterations in the Mitochondrial Proteome of Adriamycin Resistant MCF-7 Breast Cancer Cells

Strong, Rachael, Nakanishi, Takeo, Ross, Douglas, Fenselau, Catherine

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 434 KB

english, 2006

47

—Omics Dreams of Personalized Healthcare

Nicholson, Jeremy K.

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 80 KB

english, 2006

48

Selective Disulfide Bond Cleavage in Gold(I) Cationized Polypeptide Ions Formed via Gas-Phase Ion/Ion Cation Switching

Gunawardena, Harsha P., O'Hair, Richard A. J., McLuckey, Scott A.

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 143 KB

english, 2006

49

Proteomic Analysis of Amniotic Membrane Prepared for Human Transplantation: Characterization of Proteins and Clinical Implications

Hopkinson, Andrew, McIntosh, Richard S., Shanmuganathan, Vijay, Tighe, Patrick J., Dua, Harminder S.

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 474 KB

english, 2006

50

A Proteomics Approach to Identify Protein Expression Changes in Rat Liver Following Administration of 3,5,3‘-Triiodo- l -thyronine

Silvestri, Elena, Moreno, Maria, Schiavo, Luigi, de Lange, Pieter, Lombardi, Assunta, Chambery, Angela, Parente, Augusto, Lanni, Antonia, Goglia, Fernando

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 421 KB

english, 2006

51

OmpW and OmpV Are Required for NaCl Regulation in Photobacterium damsela

Wu, Lina, Lin, Xiangmin, Wang, Fengping, Ye, Dezan, Xiao, Xiang, Wang, Sanying, Peng, Xuanxian

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 277 KB

english, 2006

52

Proteome-wide Characterization of N-Glycosylation Events by Diagonal Chromatography

Ghesquière, Bart, Van Damme, Jozef, Martens, Lennart, Vandekerckhove, Joël, Gevaert, Kris

Journal:

Journal of Proteome Research

Année:

2006

Langue:

english

Fichier:

PDF, 229 KB

english, 2006