Volume 4; Issue 5

Journal of Proteome Research

Volume 4; Issue 5

1

Investigation of the Mouse Serum Proteome

Zhou, Ming, Chan, King C., Lucas, David A., Hood, Brian L., Kim, Grace J., Issaq, Haleem J., Veenstra, Timothy D., Conrads, Thomas P.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 408 KB

english, 2005

2

Primary Cell Cultures Arising from Normal Kidney and Renal Cell Carcinoma Retain the Proteomic Profile of Corresponding Tissues

Corizzato, Matteo, Eroini, Barbara, Torsello, Barbara, Valsecchi, Cristina, Di Fonzo, Andrea, Cordani, Nicoletta, Favini, Paolo, Ferrero, Stefano, Perego, Roberto A., Bianchi, Cristina

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 592 KB

english, 2005

3

Ultra Fast Trypsin Digestion of Proteins by High Intensity Focused Ultrasound

López-Ferrer, D., Capelo, J. L., Vázquez, J.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 198 KB

english, 2005

4

Comprehensive Phosphoproteome Analysis in Rice and Identification of Phosphoproteins Responsive to Different Hormones/Stresses

Khan, Monowar, Takasaki, Hironori, Komatsu, Setsuko

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 629 KB

english, 2005

5

Chemically Modified, Immobilized Trypsin Reactor with Improved Digestion Efficiency

Freije, J. Robert, Mulder, Patty P. M. F. A., Werkman, Wendy, Rieux, Laurent, Niederlander, Harm A. G., Verpoorte, Elisabeth, Bischoff, Rainer

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 181 KB

english, 2005

6

Francisella t ularensis Proteome: Low Levels of ASB-14 Facilitate the Visualization of Membrane Proteins in Total Protein Extracts

Twine, Susan M., Mykytczuk, Nadia C. S., Petit, Mireille, Tremblay, Tammy-Lynn, Conlan, J. Wayne, Kelly, John F.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 432 KB

english, 2005

7

Simple and Robust Two-Layer Matrix/Sample Preparation Method for MALDI MS/MS Analysis of Peptides

Zheng, Jing, Li, Nan, Ridyard, Marc, Dai, Hui, Robbins, Stephen M., Li, Liang

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 490 KB

english, 2005

8

Characterization of Proteins in Human Pancreatic Cancer Serum Using Differential Gel Electrophoresis and Tandem Mass Spectrometry

Yu, Kenneth H., Rustgi, Anil K., Blair, Ian A.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 379 KB

english, 2005

9

Uncovering the Unfoldome: Enriching Cell Extracts for Unstructured Proteins by Acid Treatment

Cortese, Marc S., Baird, Jason P., Uversky, Vladimir N., Dunker, A. Keith

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 225 KB

english, 2005

10

Prediction of Functional Class of the SARS Coronavirus Proteins by a Statistical Learning Method

Cai, C. Z., Han, L. Y., Chen, X., Cao, Z. W., Chen, Y. Z.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 156 KB

english, 2005

11

The Platelet Microparticle Proteome

Garcia, Benjamin A., Smalley, David M., Cho,, Shabanowitz, Jeffrey, Ley, Klaus, Hunt, Donald F.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 285 KB

english, 2005

12

Effect of Immunoaffinity Depletion of Human Serum during Proteomic Investigations

Yocum, Anastasia K., Yu, Kenneth, Oe, Tomoyuki, Blair, Ian A

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 269 KB

english, 2005

13

From Dormant to Germinating Spores of Streptomyces c oelicolor A3(2): New Perspectives from the crp Null Mutant

Piette, André, Derouaux, Adeline, Gerkens, Pascal, Noens, Elke E. E., Mazzucchelli, Gabriel, Vion, Sébastien, Koerten, Henk K., Titgemeyer, Fritz, De Pauw, Edwin, Leprince, Pierre, van Wezel, Gilles P

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 795 KB

english, 2005

14

I-DIRT, A General Method for Distinguishing between Specific and Nonspecific Protein Interactions

Tackett, Alan J., DeGrasse, Jeffrey A., Sekedat, Matthew D., Oeffinger, Marlene, Rout, Michael P., Chait, Brian T.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 145 KB

english, 2005

15

Data-Dependent Electron Capture Dissociation FT−ICR Mass Spectrometry for Proteomic Analyses

Cooper, Helen J., Akbarzadeh, Shiva, Heath, John K., Zeller, Martin

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 296 KB

english, 2005

16

Government and Society: HUPO Plasma Proteome Project's first fruits

Cottingham, Katie

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 52 KB

english, 2005

17

Government and Society: Metabolomics reporting standards proposed

Foubister, Vida

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 47 KB

english, 2005

18

Phosphoproteome Analysis of HeLa Cells Using Stable Isotope Labeling with Amino Acids in Cell Culture (SILAC)

Amanchy, Ramars, Kalume, Dario E., Iwahori, Akiko, Zhong, Jun, Pandey, Akhilesh

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 348 KB

english, 2005

19

Human Tissue Profiling with Multidimensional Protein Identification Technology

Cagney, Gerard, Park, Stephen, Chung, Clement, Tong, Bianca, O'Dushlaine, Colm, Shields, Denis C., Emili, Andrew

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 566 KB

english, 2005

20

Insights from Modeling the 3D Structure of DNA−CBF3b Complex

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 205 KB

english, 2005

21

Identification and Analysis of Multivalent Proteolytically Resistant Peptides from Gluten: Implications for Celiac Sprue

Shan, Lu, Qiao, Shuo-Wang, Arentz-Hansen, Helene, Molberg, Øyvind, Gray, Gary M., Sollid, Ludvig M., Khosla, Chaitan

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 244 KB

english, 2005

22

Optimizing Thiophosphorylation in the Presence of Competing Phosphorylation with MALDI-TOF−MS Detection

Parker, Laurie L., Schilling, Alexander B., Kron, Stephen J., Kent, Stephen B. H.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 109 KB

english, 2005

23

Profiling protein expression in C. elegans | Metabolic monitoring of liver transplants | Isolating phosphopeptides with a dendrimer | Proteome of Trypanosoma cruzi | New protein immobilization technique | Early detection of ovarian cancer | Protein isoforms in serum vs. plasma | Protein losses in 2DE | Pituitary gland proteome

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 96 KB

english, 2005

24

Proteomic Evidence for Roles for Nucleolin and Poly[ADP-ribosyl] Transferase in Drug Resistance

Fu, Zongming, Fenselau, Catherine

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 261 KB

english, 2005

25

Identification and Quantification of Differentially Expressed Proteins in E-Cadherin Deficient SCC9 Cells and SCC9 Transfectants Expressing E-Cadherin by Dimethyl Isotope Labeling, LC−MALDI MS and MS/MS J. Proteome Res. 2005 , 4 , 1419−1426

Ji, Chengjie, Li, Laiji, Gebre, Mulu, Pasdar, Manijeh, Li, Liang

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 32 KB

english, 2005

26

Impact of Replicate Types on Proteomic Expression Analysis

Karp, Natasha A., Spencer, Matthew, Lindsay, Helen, O'Dell, Kevin, Lilley, Kathryn S.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 105 KB

english, 2005

27

Parallel Tandem: A Program for Parallel Processing of Tandem Mass Spectra Using PVM or MPI and X!Tandem

Duncan, Dexter T., Craig, Robertson, Link, Andrew J.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 204 KB

english, 2005

28

Methods for the Detection of Paxillin Post-translational Modifications and Interacting Proteins by Mass Spectrometry

Schroeder, Melanie J., Webb, Donna J., Shabanowitz, Jeffrey, Horwitz, Alan F., Hunt, Donald F.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 398 KB

english, 2005

29

Comparative Plasma Proteome Analysis of Lymphoma-Bearing SJL Mice

Bhat, Vadiraja B., Choi, Man Ho, Wishnok, John S., Tannenbaum, Steven R.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 468 KB

english, 2005

30

Characterization of the Drosophila m elanogaster Mitochondrial Proteome

Alonso, Jana, Rodriguez, Javier M., Baena-López, Luis Alberto, Santarén, Juan F.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 627 KB

english, 2005

31

Phosphatase-Directed Phosphorylation-Site Determination: A Synthesis of Methods for the Detection and Identification of Phosphopeptides

Torres, Matthew P., Thapar, Roopa, Marzluff, William F., Borchers, Christoph H.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 539 KB

english, 2005

32

Proteome Approach to Characterize the Methylmalonate-Semialdehyde Dehydrogenase that Is Regulated by Gibberellin

Tanaka, Naoki, Takahashi, Hideyuki, Kitano, Hidemi, Matsuoka, Makoto, Akao, Shoichiro, Uchimiya, Hirofumi, Komatsu, Setsuko

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 553 KB

english, 2005

33

AUDENS: A Tool for Automated Peptide de Novo Sequencing

Grossmann, Jonas, Roos, Franz F., Cieliebak, Mark, Lipták, Zsuzsanna, Mathis, Lucas K., Müller, Matthias, Gruissem, Wilhelm, Baginsky, Sacha

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 291 KB

english, 2005

34

Modeling Biological Variability in 2-D Gel Proteomic Carcinogenesis Experiments

Rowell, Craig, Carpenter, Mark, Lamartiniere, Coral A.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 455 KB

english, 2005

35

Identification and Characterization of the Sulfolobus s olfataricus P2 Proteome

Chong, Poh Kuan, Wright, Phillip C.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 379 KB

english, 2005

36

Dietary Effects of Copper and Iron Deficiency on Rat Intestine: A Differential Display Proteome Analysis

Tosco, Alessandra, Siciliano, Rosa Anna, Cacace, Giuseppina, Mazzeo, Maria Fiorella, Capone, Roberta, Malorni, Antonio, Leone, Arturo, Marzullo, Liberato

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 290 KB

english, 2005

37

Characterization of Pepsinogen C as a Potential Biomarker for Gastric Cancer Using a Histo-Proteomic Approach

Melle, Christian, Ernst, Günther, Schimmel, Bettina, Bleul, Annett, Kaufmann, Roland, Hommann, Merten, Richter, Konrad K., Daffner, Wolfgang, Settmacher, Utz, Claussen, Uwe, von Eggeling, Ferdinand

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 496 KB

english, 2005

38

Enrichment of Phosphoproteins for Proteomic Analysis Using Immobilized Fe(III)-Affinity Adsorption Chromatography

Guerrera, Ida Chiara, Predic-Atkinson, Jelena, Kleiner, Oliver, Soskic, Vukic, Godovac-Zimmermann, Jasminka

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 708 KB

english, 2005

39

Detection and Identification of Protein Interactions of S100 Proteins by ProteinChip Technology

Lehmann, Roland, Melle, Christian, Escher, Niko, von Eggeling, Ferdinand

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 145 KB

english, 2005

40

Direct Identification of Ubiquitination Sites on Ubiquitin-Conjugated CHIP Using MALDI Mass Spectrometry

Wang, Dongxia, Xu, Wanping, McGrath, Sara C., Patterson, Cam, Neckers, Len, Cotter, Robert J.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 326 KB

english, 2005

41

Selection of Biomarkers by a Multivariate Statistical Processing of Composite Metabonomic Data Sets Using Multiple Factor Analysis

Dumas, Marc-Emmanuel, Canlet, Cécile, Debrauwer, Laurent, Martin, Pascal, Paris, Alain

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 348 KB

english, 2005

42

Automated PreScan Function for Scanning Fluorescently Stained 2D-PAGE Gels

Bäck, Peter, Bengtsson, Sofia, James, Peter

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 218 KB

english, 2005

43

Interresidue Contacts in Proteins and Protein−Protein Interfaces and Their Use in Characterizing the Homodimeric Interface

Saha, Rudra Prasad, Bahadur, Ranjit Prasad, Chakrabarti, Pinak

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 938 KB

english, 2005

44

Homeostatic Signature of Anabolic Steroids in Cattle Using 1 H− 13 C HMBC NMR Metabonomics

Dumas, Marc-Emmanuel, Canlet, Cécile, Vercauteren, Joseph, André, François, Paris, Alain

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 308 KB

english, 2005

45

STEM: A Software Tool for Large-Scale Proteomic Data Analyses

Shinkawa, Takashi, Taoka, Masato, Yamauchi, Yoshio, Ichimura, Tohru, Kaji, Hiroyuki, Takahashi, Nobuhiro, Isobe, Toshiaki

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 617 KB

english, 2005

46

Characterization of Vacuolar Membrane Proteins Changed in Rice Root Treated with Gibberellin

Konishi, Hirosato, Maeshima, Masayoshi, Komatsu, Setsuko

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 310 KB

english, 2005

47

Biosensor-Based Micro-Affinity Purification for the Proteomic Analysis of Protein Complexes

Catimel, B., Rothacker, J., Catimel, J., Faux, M., Ross, J., Connolly, L., Clippingdale, A., Burgess, A. W., Nice, E.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 325 KB

english, 2005

48

Coupling Interaction between Thromboxane A2 Receptor and Alpha-13 Subunit of Guanine Nucleotide-Binding Protein

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 503 KB

english, 2005

49

Review: Protein-Protein Interactions: Methods and Applications

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 47 KB

english, 2005

50

Comparison of Probability and Likelihood Models for Peptide Identification from Tandem Mass Spectrometry Data

Cannon, William R., Jarman, Kristin H., Webb-Robertson, Bobbie-Jo M., Baxter, Douglas J., Oehmen, Christopher S., Jarman, Kenneth D., Heredia-Langner, Alejandro, Auberry, Kenneth J., Anderson, Gordon

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 368 KB

english, 2005

51

Research Profile: Mouse serum proteomics

Cottingham, Katie

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 59 KB

english, 2005

52

Editorial: The Paris Consensus

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 56 KB

english, 2005

53

Reversed-Phase High-Performance Liquid Chromatographic Prefractionation of Immunodepleted Human Serum Proteins to Enhance Mass Spectrometry Identification of Lower-Abundant Proteins

Martosella, James, Zolotarjova, Nina, Liu, Hongbin, Nicol, Gordon, Boyes, Barry E.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 487 KB

english, 2005

54

Identification of Protein Fragments as Pattern Features in MALDI−MS Analyses of Serum

Zimmerman, Lisa J., Wernke, Gregory R., Caprioli, Richard M., Liebler, Daniel C.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 302 KB

english, 2005