Volume 4; Issue 2

Journal of Proteome Research

Volume 4; Issue 2

1

Proteomic Characterization of Rat Liver Exposed to 2,3,7,8-Tetrachlorobenzo- p -dioxin

Lee, Sung-Han, Lee, Do-Youn, Son, Won-Kyu, Joo, Won-A, Kim, Chan-Wha

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 535 KB

english, 2005

2

High Resolution “Ultra Performance” Liquid Chromatography Coupled to oa-TOF Mass Spectrometry as a Tool for Differential Metabolic Pathway Profiling in Functional Genomic Studies

Wilson, Ian D., Nicholson, Jeremy K., Castro-Perez, Jose, Granger, Jennifer H., Johnson, Kelly A., Smith, Brian W., Plumb, Robert S.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 644 KB

english, 2005

3

A Proteomic Approach To Analyze Auxin- and Zinc-Responsive Protein in Rice

Yang, Guangxiao, Inoue, Akihiko, Takasaki, Hironori, Kaku, Hisatoshi, Akao, Shoichiro, Komatsu, Setsuko

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 792 KB

english, 2005

4

Analysis of Shotgun Proteomics and RNA Profiling Data from Arabidopsis t haliana Chloroplasts

Baginsky, Sacha, Kleffmann, Torsten, von Zychlinski, Anne, Gruissem, Wilhelm

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 157 KB

english, 2005

5

Search for Cancer Markers from Endometrial Tissues Using Differentially Labeled Tags iTRAQ and cICAT with Multidimensional Liquid Chromatography and Tandem Mass Spectrometry

DeSouza, Leroi, Diehl, Georg, Rodrigues, Mary Joe, Guo, Jingzhong, Romaschin, Alexander D., Colgan, Terence J., Siu, K. W. Michael

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 279 KB

english, 2005

6

Identification of Protein Modifications Using MS/MS de Novo Sequencing and the OpenSea Alignment Algorithm

Searle, Brian C., Dasari, Surendra, Wilmarth, Phillip A., Turner, Mark, Reddy, Ashok P., David, Larry L., Nagalla, Srinivasa R.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 543 KB

english, 2005

7

Cold Adaptation of the Antarctic Archaeon, Methanococcoides burtonii Assessed by Proteomics Using ICAT

Goodchild, Amber, Raftery, Mark, Saunders, Neil F. W., Guilhaus, Michael, Cavicchioli, Ricardo

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 211 KB

english, 2005

8

Eliminating the Interferences from TRIS Buffer and SDS in Protein Analysis by Fused-Droplet Electrospray Ionization Mass Spectrometry

Shieh, I-Fan, Lee, Chi-Yang, Shiea, Jentaie

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 225 KB

english, 2005

9

Differential Detergent Fractionation for Non-electrophoretic Eukaryote Cell Proteomics

McCarthy, Fiona M., Burgess, Shane C., van den Berg, Bart H. J., Koter, Marek D., Pharr, G. Todd

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 446 KB

english, 2005

10

Simple Protein Complex Purification and Identification Method for High-Throughput Mapping of Protein Interaction Networks

Markillie, Lye Meng, Lin, Chiann-Tso, Adkins, Joshua N., Auberry, Deanna L., Hill, Eric A., Hooker, Brian S., Moore, Priscilla A., Moore, Ronald J., Shi, Liang, Wiley, H. Steven, Kery, Vladimir

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 276 KB

english, 2005

11

Prediction of Peptide Retention at Different HPLC Conditions from Multiple Linear Regression Models

Ba̧czek, Tomasz, Wiczling, Paweł, Marszałł, Michał, Heyden, Yvan Vander, Kaliszan, Roman

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 269 KB

english, 2005

12

Application of Isotope Coded Affinity Tag (ICAT) Analysis for the Identification of Differentially Expressed Proteins Following Infection of Atlantic Salmon ( Salmo s alar) with Infectious Hematopoietic Necrosis Virus (IHNV) or Renibacterium s almoninarum (BKD)

Booy, A. T., Haddow, J. D., Ohlund, L. B., Hardie, D. B., Olafson, R. W.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 241 KB

english, 2005

13

Phosphoproteomic Analysis of Synaptosomes from Human Cerebral Cortex

DeGiorgis, Joseph A., Jaffe, Howard, Moreira, Jorge E., Carlotti, Carlos G., Leite, João P., Pant, Harish C., Dosemeci, Ayse

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 206 KB

english, 2005

14

Effect of Biofilm Model, Mode of Growth, and Strain on Streptococcus m utans Protein Expression as Determined by Two-Dimensional Difference Gel Electrophoresis

Luppens, Suzanne B. I., ten Cate, Jacob M.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 260 KB

english, 2005

15

Assessing Data Quality of Peptide Mass Spectra Obtained by Quadrupole Ion Trap Mass Spectrometry

Xu, Ming, Geer, Lewis Y., Bryant, Stephen H., Roth, Jeri S., Kowalak, Jeffrey A., Maynard, Dawn M., Markey, Sanford P.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 237 KB

english, 2005

16

Novel Approach for Peptide Quantitation and Sequencing Based on 15 N and 13 C Metabolic Labeling

Snijders, Ambrosius P. L., de Vos, Marjon G. J., Wright, Phillip C.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 285 KB

english, 2005

17

Let's Preserve Proper Terminology

Knapp, Daniel R.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 34 KB

english, 2005

18

Meeting News: NIH Standards in Proteomics Workshop

Cottingham, Katie

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 54 KB

english, 2005

19

Proteomic Profiling of Surface Proteins on Th1 and Th2 Cells

Loyet, Kelly M., Ouyang, Wenjun, Eaton, Dan L., Stults, John T.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 523 KB

english, 2005

20

Domain Graph of Arabidopsis Proteome by Comparative Analysis

Liu, Song, Zhang, Chi, Zhou, Yaoqi

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 751 KB

english, 2005

21

Proteome Analysis of Membrane and Cell Wall Associated Proteins from Staphylococcus aureus

Nandakumar, Renu, Nandakumar, M. P., Marten, Mark R., Ross, Julia M.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 310 KB

english, 2005

22

Metabolic Labeling of Human Primary Retinal Pigment Epithelial Cells for Accurate Comparative Proteomics

Hathout, Yetrib, Flippin, Jessica, Fan, Chenguang, Liu, Pinghu, Csaky, Karl

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 277 KB

english, 2005

23

Analysis of the Dorsal Spinal Cord Synaptic Architecture by Combined Proteome Analysis and in Situ Hybridization

Dreger, Mathias, Mika, Joanna, Bieller, Annette, Jahnel, Ricarda, Gillen, Clemens, Schaefer, Martin K. H., Weihe, Eberhard, Hucho, Ferdinand

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 1.23 MB

english, 2005

24

Metabolomic analyses by MALDI-TOFMS | The dynamic nucleolar proteome | Protein interaction patterns | Glycoprotein biomarkers of liver cancer | STOCSY aids metabolite biomarker identification | New ICAT reagent | Finding phosphotyrosine | Protein biomarker for Alzheimer's | Dynamic yeast interactome | Drought-induced changes in beet proteome | Ubiquitination by MALDI-TOFMS/MS | E. coli interactome

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 116 KB

english, 2005

25

Genomic Messaging System Language Including Command Extensions for Clinical Data Categories

Robson, Barry, Mushlin, Richard

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 816 KB

english, 2005

26

Proteomic Analysis of Serum Cytokine Levels in Response to Highly Active Antiretroviral Therapy (HAART)

Relucio, Karen I., Beernink, Hans T., Chen, Donna, Israelski, Dennis M., Kim, Raymond, Holodniy, Mark

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 220 KB

english, 2005

27

Complementary Structural Information from a Tryptic N -Linked Glycopeptide via Electron Transfer Ion/Ion Reactions and Collision-Induced Dissociation

Hogan, Jason M., Pitteri, Sharon J., Chrisman, Paul A., McLuckey, Scott A.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 165 KB

english, 2005

28

Primordial Proteins and HIV

Sommer, Andrei P., Pavláth, Attila E.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 75 KB

english, 2005

29

Trypsin-Based Monolithic Bioreactor Coupled On-Line with LC/MS/MS System for Protein Digestion and Variant Identification in Standard Solutions and Serum Samples

Calleri, Enrica, Temporini, Caterina, Perani, Eleonora, De Palma, Antonella, Lubda, Dieter, Mellerio, Giorgio, Sala, Alberto, Galliano, Monica, Caccialanza, Gabriele, Massolini, Gabriella

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 349 KB

english, 2005

30

Matrix Implanted Laser Desorption Ionization (MILDI) Combined with Ion Mobility-Mass Spectrometry for Bio-Surface Analysis

Tempez, A., Ugarov, M., Egan, T., Schultz, J. A., Novikov, A., Della-Negra, S., Lebeyec, Y., Pautrat, M., Caroff, M., Smentkowski, V. S., Wang, H-Y. J., Jackson, S. N., Woods, A. S.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 318 KB

english, 2005

31

Localization of an N-Domain Region of Angiotensin-Converting Enzyme Involved in the Regulation of Ectodomain Shedding Using Monoclonal Antibodies

Balyasnikova, Irina V., Woodman, Zenda L., Albrecht, Ronald F., Natesh, Ramanathan, Acharya, K. Ravi, Sturrock, Edward D., Danilov, Sergei M.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 589 KB

english, 2005

32

SCAPE: A New Tool for the Selective CApture of PEptides in Protein Identification

Betancourt, Lazaro, Gil, Jeovanis, Besada, Vladimir, González, Luis J., Fernández-de-Cossio, Jorge, García, Liudy, Pajón, Rolando, Sanchez, Aniel, Alvarez, Félix, Padrón, Gabriel

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 161 KB

english, 2005

33

Toward a Common Proteomics Platform

Hancock, William S.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 46 KB

english, 2005

34

P-Mod: An Algorithm and Software To Map Modifications To Peptide Sequences Using Tandem MS Data

Hansen, Beau T., Davey, Sean W., Ham, Amy-Joan L., Liebler, Daniel C.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 325 KB

english, 2005

35

Protein Identification in Complex Mixtures

Eriksson, Jan, Fenyö, David

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 203 KB

english, 2005

36

Proteolytic 18 O Labeling by Peptidyl-Lys Metalloendopeptidase for Comparative Proteomics

Rao, K. C. Sekhar, Carruth, Ryan T., Miyagi, Masaru

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 368 KB

english, 2005

37

Genistein Reverses Changes of the Proteome Induced by Oxidized-LDL in EA·hy 926 Human Endothelial Cells

Fuchs, Dagmar, Erhard, Petra, Turner, Rufus, Rimbach, Gerald, Daniel, Hannelore, Wenzel, Uwe

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 474 KB

english, 2005

38

New Products

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 50 KB

english, 2005

39

Effect of High Density Lipoproteins on Protein Expression in Myoblast Cell Lines

Babic, Nikolina, Beeson, Craig, Dovichi, Norman J.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 658 KB

english, 2005

40

Human Plasma Proteome Analysis by Multidimensional Chromatography Prefractionation and Linear Ion Trap Mass Spectrometry Identification

Jin, Wen-Hai, Dai, Jie, Li, Su-Jun, Xia, Qi-Chang, Zou, Han-Fa, Zeng, Rong

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 260 KB

english, 2005

41

Clinical and Pharmacogenomic Data Mining: 3. Zeta Theory As a General Tactic for Clinical Bioinformatics

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 163 KB

english, 2005

42

Nanoliter Sample Handling Combined with Microspot MALDI−MS for Detection of Gel-Separated Phosphoproteins

Stupak, Jacek, Liu, Huaizhi, Wang, Zhengping, Brix, Brenda J., Fliegel, Larry, Li, Liang

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 224 KB

english, 2005

43

Fluorescence Properties of Glutamine-Binding Protein from Escherichia c oli and Its Complex with Glutamine

Kuznetsova, Irina M., Stepanenko, Olga V., Turoverov, Konstantin K., Staiano, Maria, Scognamiglio, Viviana, Rossi, Mose', D'Auria, Sabato

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 289 KB

english, 2005

44

Proteome Analysis of Antiproliferative Mechanism of 12-O-Tetradecanoylphorbol 13-Acetate on Cultured Nasopharyngeal Carcinoma CNE2 Cells

Jiang, Peizhou, Gan, Ming, Huang, Hua, Shen, Xinming, Wang, Shuang, Yao, Kaitai

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 366 KB

english, 2005

45

Mapping Sites of Protein Phosphorylation by Mass Spectrometry Utilizing a Chemical-Enzymatic Approach: Characterization of Products from α-S1Casein Phosphopeptides

McCormick, Daniel J., Holmes, Michael W., Muddiman, David C., Madden, Benjamin J.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 329 KB

english, 2005

46

Increased Levels of Ubiquitin in the 6-OHDA-Lesioned Striatum of Rats

Pierson, Johan, Svenningsson, Per, Caprioli, Richard M., Andren, Per E.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 124 KB

english, 2005

47

Reproducibility of Tryptic Digestion Investigated by Quantitative Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

Hagman, Charlotte, Ramström, Margareta, Jansson, Maria, James, Peter, Håkansson, Per, Bergquist, Jonas

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 189 KB

english, 2005

48

Quantitative Proteomic Analysis of the Secretory Proteins from Rat Adipose Cells Using a 2D Liquid Chromatography−MS/MS Approach

Chen, Xiaoli, Cushman, Samuel W., Pannell, Lewis K., Hess, Sonja

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 240 KB

english, 2005

49

Proteomic Analysis of Lipid Microdomains from Lipopolysaccharide-Activated Human Endothelial Cells

Karsan, Aly, Blonder, Josip, Law, Jennifer, Yaquian, Elisa, Lucas, David A., Conrads, Thomas P., Veenstra, Timothy

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 416 KB

english, 2005

50

Conversion of Human α-lactalbumin to an Apo-like State in the Complexes with Basic Poly-Amino Acids: Toward Understanding of the Molecular Mechanism of Antitumor Action of HAMLET

Permyakov, Serge E., Pershikova, Irina V., Zhadan, Andrei P., Goers, John, Bakunts, Anush G., Uversky, Vladimir N., Berliner, Lawrence J., Permyakov, Eugene A.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 157 KB

english, 2005

51

Identification of the Thrombin Light Chain A as the Single Best Mass for Differentiation of Gastric Cancer Patients from Individuals with Dyspepsia by Proteome Analysis

Ebert, Matthias P. A., Lamer, Stephanie, Meuer, Jörn, Malfertheiner, Peter, Reymond, Marc, Buschmann, Thomas, Röcken, Christoph, Seibert, Volker

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 254 KB

english, 2005

52

Depletion of High-Abundant Proteins in Body Fluids Prior to Liquid Chromatography Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

Ramström, Margareta, Hagman, Charlotte, Mitchell, Jennifer K., Derrick, Peter J., Håkansson, Per, Bergquist, Jonas

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 829 KB

english, 2005

53

Study of the Interaction of Chlorisondamine and Chlorisondamine Analogues with an Epitope of the α-2 Neuronal Acetylcholine Nicotinic Receptor Subunit

Taggi, Andrew E., Meinwald, Jerrold, Wise, Roy A., Woods, Amina S.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 312 KB

english, 2005

54

Research Profile: Proteomics data back up soy health claims

Erickson, Britt E.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 64 KB

english, 2005

55

Meetings

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 46 KB

english, 2005

56

Predicted Roles for Hypothetical Proteins in the Low-Temperature Expressed Proteome of the Antarctic Archaeon Methanococcoides b urtonii

Saunders, Neil F. W., Goodchild, Amber, Raftery, Mark, Guilhaus, Michael, Curmi, Paul M. G., Cavicchioli, Ricardo

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 174 KB

english, 2005

57

Proteomic Characterization of A Triton-Insoluble Fraction from Chloroplasts Defines A Novel Group of Proteins Associated with Macromolecular Structures

Phinney, Brett S., Thelen, Jay J.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 344 KB

english, 2005

58

Quantitative Profiling of the Detergent-Resistant Membrane Proteome of Iota-b Toxin Induced Vero Cells

Blonder, Josip, Hale, Martha L., Chan, King C., Yu, Li-Rong, Lucas, David A., Conrads, Thomas P., Zhou, Ming, Popoff, Michel R., Issaq, Haleem J., Stiles, Bradley G., Veenstra, Timothy D.

Journal:

Journal of Proteome Research

Année:

2005

Langue:

english

Fichier:

PDF, 294 KB

english, 2005