Volume 13; Issue 9

Journal of Proteome Research

Volume 13; Issue 9

1

Glycosylation and Disulfide Bond Analysis of Transiently and Stably Expressed Clade C HIV-1 gp140 Trimers in 293T Cells Identifies Disulfide Heterogeneity Present in Both Proteins and Differences in O -Linked Glycosylation

Go, Eden P., Hua, David, Desaire, Heather

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 3.15 MB

english, 2014

2

Differential Analysis of Proteomes and Metabolomes Reveals Additively Balanced Networking for Metabolism in Maize Heterosis

Wang, Zizhang, Xue, Zhen, Wang, Tai

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.47 MB

english, 2014

3

Chronic Sleep Deprivation-Induced Proteome Changes in Astrocytes of the Rat Hypothalamus

Kim, Jae-Hong, Kim, Jong-Heon, Cho, Young-Eun, Baek, Moon-Chang, Jung, Ji-Young, Lee, Maan-Gee, Jang, Il-Sung, Lee, Ho-Won, Suk, Kyoungho

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 8.08 MB

english, 2014

4

GlycoMaster DB: Software To Assist the Automated Identification of N-Linked Glycopeptides by Tandem Mass Spectrometry

He, Lin, Xin, Lei, Shan, Baozhen, Lajoie, Gilles A., Ma, Bin

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.01 MB

english, 2014

5

Efficient Reduction of Candidate Matches in Peptide Spectrum Library Searching Using the Top k Most Intense Peaks

Vu, Trung Nghia, Bittremieux, Wout, Valkenborg, Dirk, Goethals, Bart, Lemière, Filip, Laukens, Kris

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 1.38 MB

english, 2014

6

Colorectal Cancer Detection Using Targeted Serum Metabolic Profiling

Zhu, Jiangjiang, Djukovic, Danijel, Deng, Lingli, Gu, Haiwei, Himmati, Farhan, Chiorean, E. Gabriela, Raftery, Daniel

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.21 MB

english, 2014

7

Analysis of Changes in SUMO-2/3 Modification during Breast Cancer Progression and Metastasis

Subramonian, Divya, Raghunayakula, Sarita, Olsen, Jesper V., Beningo, Karen A., Paschen, Wulf, Zhang, Xiang-Dong

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 4.61 MB

english, 2014

8

Influence of the Digestion Technique, Protease, and Missed Cleavage Peptides in Protein Quantitation

Chiva, Cristina, Ortega, Mireia, Sabidó, Eduard

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 372 KB

english, 2014

9

Identification of Related Peptides through the Analysis of Fragment Ion Mass Shifts

Wilhelm, Thomas, Jones, Alexandra M. E.

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 431 KB

english, 2014

10

Pleural Effusion Lipoproteins Measured by NMR Spectroscopy for Diagnosis of Exudative Pleural Effusions: A Novel Tool for Pore-Size Estimation

Lam, Ching-Wan, Law, Chun-Yiu

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 4.76 MB

english, 2014

11

Proteomic Profiling of the Acid Stress Response in Lactobacillus plantarum 423

Heunis, Tiaan, Deane, Shelly, Smit, Salome, Dicks, Leon M. T.

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.96 MB

english, 2014

12

The Quantitative Nuclear Matrix Proteome as a Biochemical Snapshot of Nuclear Organization

Engelke, Rudolf, Riede, Julia, Hegermann, Jan, Wuerch, Andreas, Eimer, Stefan, Dengjel, Joern, Mittler, Gerhard

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 5.15 MB

english, 2014

13

Panorama: A Targeted Proteomics Knowledge Base

Sharma, Vagisha, Eckels, Josh, Taylor, Greg K., Shulman, Nicholas J., Stergachis, Andrew B., Joyner, Shannon A., Yan, Ping, Whiteaker, Jeffrey R., Halusa, Goran N., Schilling, Birgit, Gibson, Bradford

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 1.31 MB

english, 2014

14

In Situ Sample Processing Approach (iSPA) for Comprehensive Quantitative Phosphoproteome Analysis

Huang, Junfeng, Qin, Hongqiang, Dong, Jing, Song, Chunxia, Bian, Yangyang, Dong, Mingming, Cheng, Kai, Wang, Fangjun, Sun, Deguang, Wang, Liming, Ye, Mingliang, Zou, Hanfa

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.22 MB

english, 2014

15

Comparing SILAC- and Stable Isotope Dimethyl-Labeling Approaches for Quantitative Proteomics

Lau, Ho-Tak, Suh, Hyong Won, Golkowski, Martin, Ong, Shao-En

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.82 MB

english, 2014

16

Novel Approach for Analysis of Bronchoalveolar Lavage Fluid (BALF) Using HPLC-QTOF-MS-Based Lipidomics: Lipid Levels in Asthmatics and Corticosteroid-Treated Asthmatic Patients

Kang, Yun Pyo, Lee, Won Jun, Hong, Ji Yeon, Lee, Sae Bom, Park, Jeong Hill, Kim, Donghak, Park, Sunghyouk, Park, Choon-Sik, Park, Sung-Woo, Kwon, Sung Won

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 3.74 MB

english, 2014

17

Metabonomics of Human Colorectal Cancer: New Approaches for Early Diagnosis and Biomarker Discovery

Ni, Yan, Xie, Guoxiang, Jia, Wei

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 1.60 MB

english, 2014

18

Characterization of the Human NEK7 Interactome Suggests Catalytic and Regulatory Properties Distinct from Those of NEK6

de Souza, Edmarcia Elisa, Meirelles, Gabriela Vaz, Godoy, Bárbara Biatriz, Perez, Arina Marina, Smetana, Juliana Helena Costa, Doxsey, Stephen J., McComb, Mark E., Costello, Catherine E., Whelan, Step

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.75 MB

english, 2014

19

The Metabolite Profiles of the Obese Population Are Gender-Dependent

Xie, Guoxiang, Ma, Xiaojing, Zhao, Aihua, Wang, Congrong, Zhang, Yinan, Nieman, David, Nicholson, Jeremy K., Jia, Wei, Bao, Yuqian, Jia, Weiping

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 5.87 MB

english, 2014

20

Metabolic Phenotyping Reveals a Lipid Mediator Response to Ionizing Radiation

Laiakis, Evagelia C., Strassburg, Katrin, Bogumil, Ralf, Lai, Steven, Vreeken, Rob J., Hankemeier, Thomas, Langridge, James, Plumb, Robert S., Fornace, Albert J., Astarita, Giuseppe

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.23 MB

english, 2014

21

Untargeted Mass Spectrometry-Based Metabolomic Profiling of Pleural Effusions: Fatty Acids as Novel Cancer Biomarkers for Malignant Pleural Effusions

Lam, Ching-Wan, Law, Chun-Yiu

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 1.79 MB

english, 2014

22

Utility of RNA-seq and GPMDB Protein Observation Frequency for Improving the Sensitivity of Protein Identification by Tandem MS

Shanmugam, Avinash K., Yocum, Anastasia K., Nesvizhskii, Alexey I.

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 1.08 MB

english, 2014

23

Interferon-α2b against Microbes through Promoting Biosynthesis of Unsaturated Fatty Acids

Zhao, Xianliang, Wu, Changwen, Peng, Xuanxian, Li, Hui

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 3.87 MB

english, 2014

24

Empirical Bayesian Random Censoring Threshold Model Improves Detection of Differentially Abundant Proteins

Koopmans, Frank, Cornelisse, L. Niels, Heskes, Tom, Dijkstra, Tjeerd M. H.

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 1.20 MB

english, 2014

25

StUbEx: Stable Tagged Ubiquitin Exchange System for the Global Investigation of Cellular Ubiquitination

Akimov, Vyacheslav, Henningsen, Jeanette, Hallenborg, Philip, Rigbolt, Kristoffer T. G., Jensen, Søren Skov, Nielsen, Mogens M., Kratchmarova, Irina, Blagoev, Blagoy

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 6.19 MB

english, 2014

26

Multiplexed LC–MS/MS Assay for Urine Albumin

Beasley-Green, Ashley, Burris, Nijah M., Bunk, David M., Phinney, Karen W.

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 4.09 MB

english, 2014

27

Proteomics of Neuropathic Pain: Proteins and Signaling Pathways Affected in a Rat Model

Sui, Ping, Watanabe, Hiroyuki, Ossipov, Michael H., Bakalkin, Georgy, Artemenko, Konstantin, Bergquist, Jonas

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 364 KB

english, 2014

28

Biomarkers Identified by Urinary Metabonomics for Noninvasive Diagnosis of Nutritional Rickets

Wang, Maoqing, Yang, Xue, Ren, Lihong, Li, Songtao, He, Xuan, Wu, Xiaoyan, Liu, Tingting, Lin, Liqun, Li, Ying, Sun, Changhao

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 3.49 MB

english, 2014

29

Direct Detection of Biotinylated Proteins by Mass Spectrometry

Schiapparelli, Lucio Matias, McClatchy, Daniel B., Liu, Han-Hsuan, Sharma, Pranav, Yates, John R., Cline, Hollis T.

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 4.48 MB

english, 2014

30

Serum Metabolomic Signatures of Lymph Node Metastasis of Esophageal Squamous Cell Carcinoma

Jin, Hai, Qiao, Fan, Chen, Ling, Lu, Chengjun, Xu, Li, Gao, Xianfu

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 4.54 MB

english, 2014

31

Online Quantitative Proteomics p -Value Calculator for Permutation-Based Statistical Testing of Peptide Ratios

Chen, David, Shah, Anup, Nguyen, Hien, Loo, Dorothy, Inder, Kerry L., Hill, Michelle M.

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.06 MB

english, 2014