Volume 13; Issue 6

Journal of Proteome Research

Volume 13; Issue 6

1

Protein-Centric N-Glycoproteomics Analysis of Membrane and Plasma Membrane Proteins

Sun, Bingyun, Hood, Leroy

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 694 KB

english, 2014

2

Staphylococcus aureus Surface Proteins Involved in Adaptation to Oxacillin Identified Using a Novel Cell Shaving Approach

Solis, Nestor, Parker, Benjamin L., Kwong, Stephen M., Robinson, Gareth, Firth, Neville, Cordwell, Stuart J.

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 3.57 MB

english, 2014

3

Integrating Genomic, Transcriptomic, and Interactome Data to Improve Peptide and Protein Identification in Shotgun Proteomics

Wang, Xiaojing, Zhang, Bing

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 1.05 MB

english, 2014

4

iTRAQ-Based Quantitative Proteomics Analysis Revealed Alterations of Carbohydrate Metabolism Pathways and Mitochondrial Proteins in a Male Sterile Cybrid Pummelo

Zheng, Bei-Bei, Fang, Yan-Ni, Pan, Zhi-Yong, Sun, Li, Deng, Xiu-Xin, Grosser, Jude W., Guo, Wen-Wu

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.51 MB

english, 2014

5

Iterative Genome Correction Largely Improves Proteomic Analysis of Nonmodel Organisms

Wu, Xiaohui, Xu, Lina, Gu, Wei, Xu, Qian, He, Qing-Yu, Sun, Xuesong, Zhang, Gong

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 3.85 MB

english, 2014

6

Ubiquitin Profiling in Liver Using a Transgenic Mouse with Biotinylated Ubiquitin

Lectez, Benoît, Migotti, Rebekka, Lee, So Young, Ramirez, Juanma, Beraza, Naiara, Mansfield, Bill, Sutherland, James D., Martinez-Chantar, Maria L., Dittmar, Gunnar, Mayor, Ugo

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 1.83 MB

english, 2014

7

Quantitative NMR Metabolite Profiling of Methicillin-Resistant and Methicillin-Susceptible Staphylococcus aureus Discriminates between Biofilm and Planktonic Phenotypes

Ammons, Mary Cloud B., Tripet, Brian P., Carlson, Ross P., Kirker, Kelly R., Gross, Michael A., Stanisich, Jessica J., Copié, Valérie

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.54 MB

english, 2014

8

Functional Annotation of Proteome Encoded by Human Chromosome 22

Pinto, Sneha M., Manda, Srikanth S., Kim, Min-Sik, Taylor, KyOnese, Selvan, Lakshmi Dhevi Nagarajha, Balakrishnan, Lavanya, Subbannayya, Tejaswini, Yan, Fangfei, Prasad, T. S. Keshava, Gowda, Harsha,

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.79 MB

english, 2014

9

High-Confidence Glycosome Proteome for Procyclic Form Trypanosoma brucei by Epitope-Tag Organelle Enrichment and SILAC Proteomics

Güther, Maria Lucia S., Urbaniak, Michael D., Tavendale, Amy, Prescott, Alan, Ferguson, Michael A. J.

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 535 KB

english, 2014

10

Impact of Digestion Conditions on Phosphoproteomics

Dickhut, Clarissa, Feldmann, Ingo, Lambert, Jörg, Zahedi, René P.

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.11 MB

english, 2014

11

Cilium Adhesin P216 (MHJ_0493) Is a Target of Ectodomain Shedding and Aminopeptidase Activity on the Surface of Mycoplasma hyopneumoniae

Tacchi, Jessica L., Raymond, Benjamin B. A., Jarocki, Veronica M., Berry, Iain J., Padula, Matthew P., Djordjevic, Steven P.

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 567 KB

english, 2014

12

Integrating Meta-Analysis of Microarray Data and Targeted Proteomics for Biomarker Identification: Application in Breast Cancer

Pavlou, Maria P., Dimitromanolakis, Apostolos, Martinez-Morillo, Eduardo, Smid, Marcel, Foekens, John A., Diamandis, Eleftherios P.

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 1.70 MB

english, 2014

13

Normalyzer: A Tool for Rapid Evaluation of Normalization Methods for Omics Data Sets

Chawade, Aakash, Alexandersson, Erik, Levander, Fredrik

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.47 MB

english, 2014

14

The Distinct Functional Roles of the Inner and Outer Chloroplast Envelope of Pea ( Pisum sativum ) As Revealed by Proteomic Approaches

Gutierrez-Carbonell, Elain, Takahashi, Daisuke, Lattanzio, Giuseppe, Rodríguez-Celma, Jorge, Kehr, Julia, Soll, Jürgen, Philippar, Katrin, Uemura, Matsuo, Abadía, Javier, López-Millán, Ana Flor

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.52 MB

english, 2014

15

Metabolomics Analysis Uncovers That Dietary Restriction Buffers Metabolic Changes Associated with Aging in Caenorhabditis elegans

Pontoizeau, Clément, Mouchiroud, Laurent, Molin, Laurent, Mergoud-dit-Lamarche, Adeline, Dallière, Nicolas, Toulhoat, Pierre, Elena-Herrmann, Bénédicte, Solari, Florence

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 3.30 MB

english, 2014

16

Assessing the Citrullinome in Rheumatoid Arthritis Synovial Fluid with and without Enrichment of Citrullinated Peptides

Tutturen, Astrid E. V., Fleckenstein, Burkhard, de Souza, Gustavo A.

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 1.09 MB

english, 2014

17

Characterization of Phosphorylation- and RNA-Dependent UPF1 Interactors by Quantitative Proteomics

Flury, Valentin, Restuccia, Umberto, Bachi, Angela, Mühlemann, Oliver

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 8.02 MB

english, 2014

18

1 H NMR Serum Metabonomics for Understanding Metabolic Dysregulation in Women with Idiopathic Recurrent Spontaneous Miscarriage during Implantation Window

Banerjee, Priyanka, Dutta, Mainak, Srivastava, Sudha, Joshi, Mamata, Chakravarty, Baidyanath, Chaudhury, Koel

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.62 MB

english, 2014

19

Human Proteins with Target Sites of Multiple Post-Translational Modification Types Are More Prone to Be Involved in Disease

Huang, Qianli, Chang, Jinhui, Cheung, Man Kit, Nong, Wenyan, Li, Lei, Lee, Ming-tsung, Kwan, Hoi Shan

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 1.38 MB

english, 2014

20

Mass Spectrometry-Based Proteomic Approach in Oenococcus oeni Enological Starter

Napoli, Anna, Aiello, Donatella, Aiello, Gilda, Cappello, Maria Stella, Di Donna, Leonardo, Mazzotti, Fabio, Materazzi, Stefano, Fiorillo, Marco, Sindona, Giovanni

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 1.78 MB

english, 2014

21

Nuclear Magnetic Resonance Metabolomics of Iron Deficiency in Soybean Leaves

Lima, Marta R. M., Diaz, Sílvia O., Lamego, Inês, Grusak, Michael A., Vasconcelos, Marta W., Gil, Ana M.

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 6.24 MB

english, 2014

22

Metabolomic Analysis Reveals a Unique Urinary Pattern in Normozoospermic Infertile Men

Zhang, Jie, Mu, Xiaoli, Xia, Yankai, Martin, Francis L, Hang, Wei, Liu, Liangpo, Tian, Meiping, Huang, Qingyu, Shen, Heqing

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.79 MB

english, 2014

23

A COFRADIC Protocol To Study Protein Ubiquitination

Stes, Elisabeth, Laga, Mathias, Walton, Alan, Samyn, Noortje, Timmerman, Evy, De Smet, Ive, Goormachtig, Sofie, Gevaert, Kris

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 326 KB

english, 2014

24

MALDI Imaging Analysis of Neuropeptides in the Africanized Honeybee ( Apis mellifera ) Brain: Effect of Ontogeny

Pratavieira, Marcel, da Silva Menegasso, Anally Ribeiro, Garcia, Ana Maria Caviquioli, dos Santos, Diego Simões, Gomes, Paulo Cesar, Malaspina, Osmar, Palma, Mario Sergio

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 6.40 MB

english, 2014

25

Proteome Analysis of a Hepatocyte-Specific BIRC5 (Survivin)-Knockout Mouse Model during Liver Regeneration

Bracht, Thilo, Hagemann, Sascha, Loscha, Marius, Megger, Dominik A., Padden, Juliet, Eisenacher, Martin, Kuhlmann, Katja, Meyer, Helmut E., Baba, Hideo A., Sitek, Barbara

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 3.84 MB

english, 2014

26

Targeted Proteomics Pipeline Reveals Potential Biomarkers for the Diagnosis of Metastatic Lung Cancer in Pleural Effusion

Chen, Chi-De, Wang, Chih-Liang, Yu, Chia-Jung, Chien, Kun-Yi, Chen, Yi-Ting, Chen, Min-Chi, Chang, Yu-Sun, Wu, Chih-Ching, Yu, Jau-Song

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.60 MB

english, 2014

27

Uncovering Effects of Ex Vivo Protease Activity during Proteomics and Peptidomics Sample Extraction in Rat Brain Tissue by Oxygen-18 Labeling

Stingl, Christoph, Söderquist, Marcus, Karlsson, Oskar, Borén, Mats, Luider, Theo M.

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 1.58 MB

english, 2014

28

Label-Free Quantitative Proteomics Reveals the Dynamics of Proteasome Complexes Composition and Stoichiometry in a Wide Range of Human Cell Lines

Fabre, Bertrand, Lambour, Thomas, Garrigues, Luc, Ducoux-Petit, Manuelle, Amalric, François, Monsarrat, Bernard, Burlet-Schiltz, Odile, Bousquet-Dubouch, Marie-Pierre

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 1.15 MB

english, 2014

29

Liver Metabolomics Reveals Increased Oxidative Stress and Fibrogenic Potential in Gfrp Transgenic Mice in Response to Ionizing Radiation

Cheema, Amrita K, Pathak, Rupak, Zandkarimi, Fereshteh, Kaur, Prabhjit, Alkhalil, Lynn, Singh, Rajbir, Zhong, Xiaogang, Ghosh, Sanchita, Aykin-Burns, Nukhet, Hauer-Jensen, Martin

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.21 MB

english, 2014

30

Mass-Selected Site-Specific Core-Fucosylation of Ceruloplasmin in Alcohol-Related Hepatocellular Carcinoma

Yin, Haidi, Lin, Zhenxin, Nie, Song, Wu, Jing, Tan, Zhijing, Zhu, Jianhui, Dai, Jianliang, Feng, Ziding, Marrero, Jorge, Lubman, David M.

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 1.94 MB

english, 2014

31

Pilot Phase I/II Personalized Therapy Trial for Metastatic Colorectal Cancer: Evaluating the Feasibility of Protein Pathway Activation Mapping for Stratifying Patients to Therapy with Imatinib and Panitumumab

Pierobon, M., Silvestri, A., Spira, A., Reeder, A., Pin, E., Banks, S., Parasido, Erika, Edmiston, K., Liotta, L., Petricoin, E.

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 7.31 MB

english, 2014

32

Analysis of Serum Haptoglobin Fucosylation in Hepatocellular Carcinoma and Liver Cirrhosis of Different Etiologies

Zhu, Jianhui, Lin, Zhenxin, Wu, Jing, Yin, Haidi, Dai, Jianliang, Feng, Ziding, Marrero, Jorge, Lubman, David M.

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.42 MB

english, 2014

33

Altered N-Glycan Expression Profile in Epithelial-to-Mesenchymal Transition of NMuMG Cells Revealed by an Integrated Strategy Using Mass Spectrometry and Glycogene and Lectin Microarray Analysis

Tan, Zengqi, Lu, Wei, Li, Xiang, Yang, Ganglong, Guo, Jia, Yu, Hanjie, Li, Zheng, Guan, Feng

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 6.00 MB

english, 2014

34

HGF Induces Epithelial-to-Mesenchymal Transition by Modulating the Mammalian Hippo/MST2 and ISG15 Pathways

Farrell, Jennifer, Kelly, Ciara, Rauch, Jens, Kida, Katarzyna, García-Muñoz, Amaya, Monsefi, Naser, Turriziani, Benedetta, Doherty, Carolanne, Mehta, Jai P., Matallanas, David, Simpson, Jeremy C., Kol

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 4.28 MB

english, 2014

35

Proteomic Analysis of Insect Molting Fluid with a Focus on Enzymes Involved in Chitin Degradation

Qu, Mingbo, Ma, Li, Chen, Peng, Yang, Qing

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 467 KB

english, 2014

36

Comprehensive Comparative and Semiquantitative Proteome of a Very Low Number of Native and Matched Epstein–Barr-Virus-Transformed B Lymphocytes Infiltrating Human Melanoma

Maurer, Margarita, Müller, André C., Parapatics, Katja, Pickl, Winfried F., Wagner, Christine, Rudashevskaya, Elena L., Breitwieser, Florian P., Colinge, Jacques, Garg, Kanika, Griss, Johannes, Bennet

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 4.54 MB

english, 2014