Volume 12; Issue 4

Journal of Proteome Research

Volume 12; Issue 4

1

Salivary Proteome and Peptidome Profiling in Type 1 Diabetes Mellitus Using a Quantitative Approach

Caseiro, Armando, Ferreira, Rita, Padrão, Ana, Quintaneiro, Cláudio, Pereira, Amélia, Marinheiro, Rosário, Vitorino, Rui, Amado, Francisco

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.16 MB

english, 2013

2

An Automated Pipeline for High-Throughput Label-Free Quantitative Proteomics

Weisser, Hendrik, Nahnsen, Sven, Grossmann, Jonas, Nilse, Lars, Quandt, Andreas, Brauer, Hendrik, Sturm, Marc, Kenar, Erhan, Kohlbacher, Oliver, Aebersold, Ruedi, Malmström, Lars

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 2.63 MB

english, 2013

3

In Vivo Protein Interaction Network Identified with a Novel Real-Time Cross-Linked Peptide Identification Strategy

Weisbrod, Chad R., Chavez, Juan D., Eng, Jimmy K., Yang, Li, Zheng, Chunxiang, Bruce, James E.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 724 KB

english, 2013

4

Mapping PARP-1 Auto-ADP-ribosylation Sites by Liquid Chromatography–Tandem Mass Spectrometry

Chapman, John D, Gagné, Jean-Philippe, Poirier, Guy G., Goodlett, David R.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 3.32 MB

english, 2013

5

Comparative Study of Targeted and Label-free Mass Spectrometry Methods for Protein Quantification

IJsselstijn, Linda, Stoop, Marcel P., Stingl, Christoph, Sillevis Smitt, Peter A. E., Luider, Theo M., Dekker, Lennard J. M.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 339 KB

english, 2013

6

Improved Detection of Quantitative Differences Using a Combination of Spectral Counting and MS/MS Total Ion Current

Freund, Dana M., Prenni, Jessica E.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 2.65 MB

english, 2013

7

Hippurate: The Natural History of a Mammalian–Microbial Cometabolite

Lees, Hannah J., Swann, Jonathan R., Wilson, Ian D., Nicholson, Jeremy K., Holmes, Elaine

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 886 KB

english, 2013

8

The Effects of 5-Fluorouracil on the Proteome of Colon Cancer Cells

Marin-Vicente, Consuelo, Lyutvinskiy, Yaroslav, Romans Fuertes, Patricia, Zubarev, Roman A., Visa, Neus

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.32 MB

english, 2013

9

Pharmacoproteomic Study of the Natural Product Ebenfuran III in DU-145 Prostate Cancer Cells: The Quantitative and Temporal Interrogation of Chemically Induced Cell Death at the Protein Level

Roumeliotis, Theodoros I., Halabalaki, Maria, Alexi, Xanthippi, Ankrett, Dyan, Giannopoulou, Eugenia G., Skaltsounis, Alexios-Leandros, Sayan, Berna S., Alexis, Michael N., Townsend, Paul A., Garbis,

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 698 KB

english, 2013

10

Proteomic Analysis of Two Metabolic Proteins with Potential to Translocate to Plasma Membrane Associated with Tumor Metastasis Development and Drug Targets

Xue, Ting, Zhang, Yan, Zhang, Luofu, Yao, Ling, Hu, Xiaofang, Xu, Lisa X.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 420 KB

english, 2013

11

Early Metabolic Adaptation in C57BL/6 Mice Resistant to High Fat Diet Induced Weight Gain Involves an Activation of Mitochondrial Oxidative Pathways

Boulangé, Claire L., Claus, Sandrine P., Chou, Chieh J., Collino, Sebastiano, Montoliu, Ivan, Kochhar, Sunil, Holmes, Elaine, Rezzi, Serge, Nicholson, Jeremy K., Dumas, Marc E., Martin, François-Pierr

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 663 KB

english, 2013

12

Using Immunoproteomics to Identify Alpha-enolase as an Autoantigen in Liver Fibrosis

Peng, Bo, Huang, Xueyong, Nakayasu, Ernesto S., Petersen, John R., Qiu, Suimin, Almeida, Igor C., Zhang, Jian-Ying

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 3.51 MB

english, 2013

13

UDP-Glucose Pyrophosphorylase Is a Novel Plant Cell Death Regulator

Chivasa, Stephen, Tomé, Daniel F. A., Slabas, Antoni R.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 3.47 MB

english, 2013

14

Imaging Mass Spectrometry-based Molecular Histology Differentiates Microscopically Identical and Heterogeneous Tumors

Jones, Emrys A., Schmitz, Nicole, Waaijer, Cathelijn J. F., Frese, Christian K., van Remoortere, Alexandra, van Zeijl, René J. M., Heck, Albert J. R., Hogendoorn, Pancras C. W., Deelder, André M., Alt

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 601 KB

english, 2013

15

Neurotoxin-Induced Neuropeptide Perturbations in Striatum of Neonatal Rats

Karlsson, Oskar, Kultima, Kim, Wadensten, Henrik, Nilsson, Anna, Roman, Erika, Andrén, Per E., Brittebo, Eva B.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.44 MB

english, 2013

16

A New Approach to Evaluating Statistical Significance of Spectral Identifications

Mohimani, Hosein, Kim, Sangtae, Pevzner, Pavel A.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.63 MB

english, 2013

17

Dynamics of the Striped Bass ( Morone saxatilis ) Ovary Proteome Reveal a Complex Network of the Translasome

Reading, Benjamin J., Williams, Valerie N., Chapman, Robert W., Williams, Taufika Islam, Sullivan, Craig V.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 2.47 MB

english, 2013

18

Phosphotyrosine Profiling of NSCLC Cells in Response to EGF and HGF Reveals Network Specific Mediators of Invasion

Johnson, Hannah, Lescarbeau, Rebecca S., Gutierrez, Jesus A., White, Forest M.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 735 KB

english, 2013

19

Proteomics Analysis of Herpes Simplex Virus Type 1-Infected Cells Reveals Dynamic Changes of Viral Protein Expression, Ubiquitylation, and Phosphorylation

Bell, Christina, Desjardins, Michel, Thibault, Pierre, Radtke, Kerstin

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 501 KB

english, 2013

20

Quantitative Proteomics Reveals Distinct Differences in the Protein Content of Outer Membrane Vesicle Vaccines

van de Waterbeemd, Bas, Mommen, Geert P. M., Pennings, Jeroen L. A., Eppink, Michel H., Wijffels, René H., van der Pol, Leo A., de Jong, Ad P. J. M.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 493 KB

english, 2013

21

Comparative Proteome Analysis of the Strawberry- Fusarium oxysporum f. sp. fragariae Pathosystem Reveals Early Activation of Defense Responses as a Crucial Determinant of Host Resistance

Fang, Xiangling, Jost, Ricarda, Finnegan, Patrick M., Barbetti, Martin J.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.53 MB

english, 2013

22

Alanine-Metabolizing Enzyme Alt1 Is Critical in Determining Yeast Life Span, As Revealed by Combined Metabolomic and Genetic Studies

Yu, Sung-Lim, An, Yong Jin, Yang, Hey-ji, Kang, Mi-Sun, Kim, Ho-Yeol, Wen, He, Jin, Xing, Kwon, Hyuk Nam, Min, Kyung-Jin, Lee, Sung-Keun, Park, Sunghyouk

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 2.07 MB

english, 2013

23

Global Phosphoproteomic Analysis Reveals Diverse Functions of Serine/Threonine/Tyrosine Phosphorylation in the Model Cyanobacterium Synechococcus sp. Strain PCC 7002

Yang, Ming-kun, Qiao, Zhi-xian, Zhang, Wan-yi, Xiong, Qian, Zhang, Jia, Li, Tao, Ge, Feng, Zhao, Jin-dong

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.70 MB

english, 2013

24

Proteomic Analysis of Cow, Yak, Buffalo, Goat and Camel Milk Whey Proteins: Quantitative Differential Expression Patterns

Yang, Yongxin, Bu, Dengpan, Zhao, Xiaowei, Sun, Peng, Wang, Jiaqi, Zhou, Lingyun

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 388 KB

english, 2013

25

Comparing Immobilized Kinase Inhibitors and Covalent ATP Probes for Proteomic Profiling of Kinase Expression and Drug Selectivity

Lemeer, Simone, Zörgiebel, Corina, Ruprecht, Benjamin, Kohl, Kristian, Kuster, Bernhard

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 350 KB

english, 2013

26

Proteogenomic Analysis of Human Colon Carcinoma Cell Lines LIM1215, LIM1899, and LIM2405

Fanayan, Susan, Smith, Joshua T., Lee, Ling Y., Yan, Fangfei, Snyder, Michael, Hancock, William S., Nice, Edouard

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.69 MB

english, 2013

27

Serum Biomarkers Reveal Long-term Cardiac Injury in Isoproterenol-treated African Green Monkeys

Liu, Yashu, Parman, Toufan, Schneider, Bridget, Song, Benben, Galande, Amit K., Anderson, Dave, Mirsalis, Jon

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 3.12 MB

english, 2013

28

Novel Blood Collection Method Allows Plasma Proteome Analysis from Single Zebrafish

Babaei, Fatemeh, Ramalingam, Rajkumar, Tavendale, Amy, Liang, Yimin, Yan, Leo So Kin, Ajuh, Paul, Cheng, Shuk Han, Lam, Yun Wah

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 592 KB

english, 2013

29

Effect of Alternative Splicing on the Degree Centrality of Nodes in Protein–Protein Interaction Networks of Homo sapiens

Sinha, Anupam, Nagarajaram, Hampapathalu Adimurthy

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.82 MB

english, 2013

30

Deletion of flbA Results in Increased Secretome Complexity and Reduced Secretion Heterogeneity in Colonies of Aspergillus niger

Krijgsheld, Pauline, Nitsche, Benjamin M., Post, Harm, Levin, Ana M., Müller, Wally H., Heck, Albert J. R., Ram, Arthur F. J., Altelaar, A. F. Maarten, Wösten, Han A. B.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.94 MB

english, 2013

31

The Lecticans of Mammalian Brain Perineural Net Are O-Mannosylated

Pacharra, Sandra, Hanisch, Franz-Georg, Mühlenhoff, Martina, Faissner, Andreas, Rauch, Uwe, Breloy, Isabelle

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.19 MB

english, 2013

32

Paraoxonase-1 Deficiency Is Associated with Severe Liver Steatosis in Mice Fed a High-fat High-cholesterol Diet: A Metabolomic Approach

García-Heredia, Anabel, Kensicki, Elizabeth, Mohney, Robert P., Rull, Anna, Triguero, Iris, Marsillach, Judit, Tormos, Carmen, Mackness, Bharti, Mackness, Michael, Shih, Diana M., Pedro-Botet, Juan, J

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 2.11 MB

english, 2013

33

XLink-DB: Database and Software Tools for Storing and Visualizing Protein Interaction Topology Data

Zheng, Chunxiang, Weisbrod, Chad R., Chavez, Juan D., Eng, Jimmy K., Sharma, Vagisha, Wu, Xia, Bruce, James E.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.45 MB

english, 2013

34

Plasma 25-Hydroxyvitamin D, Hormonal Contraceptive Use, and the Plasma Proteome in Caucasian, East Asian, and South Asian Young Adults

García-Bailo, Bibiana, Jamnik, Joseph, Da Costa, Laura A., Borchers, Christoph H., Badawi, Alaa, El-Sohemy, Ahmed

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.46 MB

english, 2013

35

Quantitative Proteomic Analysis Identified Paraoxonase 1 as a Novel Serum Biomarker for Microvascular Invasion in Hepatocellular Carcinoma

Huang, Cheng, Wang, Yuwei, Liu, Shengdong, Ding, Guangyu, Liu, Weiren, Zhou, Jian, Kuang, Ming, Ji, Yuan, Kondo, Tadashi, Fan, Jia

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 3.13 MB

english, 2013

36

Substrate Specificity of Clostridial Glucosylating Toxins and Their Function on Colonocytes Analyzed by Proteomics Techniques

Zeiser, Johannes, Gerhard, Ralf, Just, Ingo, Pich, Andreas

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 2.03 MB

english, 2013

37

Hsp90 Inhibitor SNX-7081 Dysregulates Proteins Involved with DNA Repair and Replication and the Cell Cycle in Human Chronic Lymphocytic Leukemia (CLL) Cells

Che, Yiping, Best, O. Giles, Zhong, Ling, Kaufman, Kimberley L., Mactier, Swetlana, Raftery, Mark, Graves, Lee M., Mulligan, Stephen P., Christopherson, Richard I.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 2.72 MB

english, 2013

38

Toward Personalized Nutrition: Comprehensive Phytoprofiling and Metabotyping

Xie, Guoxiang, Li, Xin, Li, Houkai, Jia, Wei

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 2.07 MB

english, 2013

39

Premature Impairment of Methylation Pathway and Cardiac Metabolic Dysfunction in fa / fa Obese Zucker Rats

de Castro, Nuria M., Yaqoob, Parveen, de la Fuente, Mónica, Baeza, Isabel, Claus, Sandrine P.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.84 MB

english, 2013

40

Mass Spectrometry-based Metabolomics for the Discovery of Biomarkers of Fruit and Vegetable Intake: Citrus Fruit as a Case Study

Pujos-Guillot, Estelle, Hubert, Jane, Martin, Jean-François, Lyan, Bernard, Quintana, Mercedes, Claude, Sylvain, Chabanas, Bruno, Rothwell, Joseph A., Bennetau-Pelissero, Catherine, Scalbert, Augustin

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 4.83 MB

english, 2013

41

Ras1 CA -Upregulated bcpi Inhibits Cathepsin Activity to Prevent Tissue Destruction of the Bombyx Posterior Silk Gland

Ma, Li, Liu, Shumin, Shi, Min, Chen, Xue-xin, Li, Sheng

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.28 MB

english, 2013

42

MALDI/Post Ionization-Ion Mobility Mass Spectrometry of Noncovalent Complexes of Dopamine Receptors’ Epitopes

Woods, Amina S., Jackson, Shelley N., Lewis, Ernest K., Egan, Thomas, Muller, Ludovic, Tabet, Jean-Claude, Schultz, J. Albert

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.34 MB

english, 2013

43

An Integrated Proteomics Reveals Pathological Mechanism of Honeybee ( Apis cerena ) Sacbrood Disease

Han, Bin, Zhang, Lan, Feng, Mao, Fang, Yu, Li, Jianke

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 2.73 MB

english, 2013