Volume 12; Issue 2

Journal of Proteome Research

Volume 12; Issue 2

1

Comparison of GC-MS and NMR for Metabolite Profiling of Rice Subjected to Submergence Stress

Barding, Gregory A., Béni, Szabolcs, Fukao, Takeshi, Bailey-Serres, Julia, Larive, Cynthia K.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.12 MB

english, 2013

2

Proteomic Analysis of Trypanosoma cruzi Secretome: Characterization of Two Populations of Extracellular Vesicles and Soluble Proteins

Bayer-Santos, Ethel, Aguilar-Bonavides, Clemente, Rodrigues, Silas Pessini, Cordero, Esteban Maurício, Marques, Alexandre Ferreira, Varela-Ramirez, Armando, Choi, Hyungwon, Yoshida, Nobuko, da Silveir

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 5.73 MB

english, 2013

3

Following Healthy Pregnancy by Nuclear Magnetic Resonance (NMR) Metabolic Profiling of Human Urine

Diaz, Sílvia O., Barros, António S., Goodfellow, Brian J., Duarte, Iola F., Carreira, Isabel M., Galhano, Eulália, Pita, Cristina, Almeida, Maria do Céu, Gil, Ana M.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.17 MB

english, 2013

4

Trapping and Proteomic Identification of Cellular Substrates of the ClpP Protease in Staphylococcus aureus

Feng, Jingyuan, Michalik, Stephan, Varming, Anders N., Andersen, Julie H., Albrecht, Dirk, Jelsbak, Lotte, Krieger, Stefanie, Ohlsen, Knut, Hecker, Michael, Gerth, Ulf, Ingmer, Hanne, Frees, Dorte

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 770 KB

english, 2013

5

Comparative Proteomics Analysis of Selenium Responses in Selenium-Enriched Rice Grains

Wang, Yu-Dong, Wang, Xu, Ngai, Sai-ming, Wong, Yum-shing

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 704 KB

english, 2013

6

Metabolomic Study of Biochemical Changes in the Plasma and Urine of Primary Dysmenorrhea Patients Using UPLC–MS Coupled with a Pattern Recognition Approach

Su, Shulan, Duan, Jinao, Wang, Peijuan, Liu, Pei, Guo, Jianming, Shang, Erxin, Qian, Dawei, Tang, Yuping, Tang, Zongxiang

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.14 MB

english, 2013

7

Label-Free Quantitative Proteomics Reveals Differentially Regulated Proteins in Experimental Gingivitis

Bostanci, Nagihan, Ramberg, Per, Wahlander, Åsa, Grossman, Jonas, Jönsson, Daniel, Barnes, Virginia Monsul, Papapanou, Panos N.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 583 KB

english, 2013

8

Mass Spectrometric Evaluation of Neuropeptidomic Profiles upon Heat Stabilization Treatment of Neuroendocrine Tissues in Crustaceans

Sturm, Robert M., Greer, Tyler, Woodards, Nicole, Gemperline, Erin, Li, Lingjun

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 443 KB

english, 2013

9

Prefractionation of Intact Proteins by Reversed-Phase and Anion-Exchange Chromatography for the Differential Proteomic Analysis of Saccharomyces cerevisiae

Stobaugh, Jordan T., Fague, Kaitlin M., Jorgenson, James W.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 485 KB

english, 2013

10

Proteomic Analysis of an Unculturable Bacterial Endosymbiont ( Blochmannia ) Reveals High Abundance of Chaperonins and Biosynthetic Enzymes

Fan, Yongliang, Thompson, J. Will, Dubois, Laura G., Moseley, M. Arthur, Wernegreen, Jennifer J.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 621 KB

english, 2013

11

High Resolution Clear Native Electrophoresis (hrCNE) Allows a Detailed Analysis of the Heterotrimeric Structure of Recombinant Neisseria meningitidis Porins Inserted into Liposomes

Freixeiro, Paula, Diéguez-Casal, Ernesto, Costoya, Liliana, Marzoa, Juan, Ferreirós, Carlos M., Criado, María Teresa, Sánchez, Sandra

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 324 KB

english, 2013

12

Intrarenal Metabolomic Investigation of Chronic Kidney Disease and its TGF-β1 Mechanism in Induced-adenine Rats using UPLC Q-TOF/HSMS/MS E

Zhao, Ying-Yong, Cheng, Xian-Long, Wei, Feng, Bai, Xu, Tan, Xiao-Jie, Lin, Rui-Chao, Mei, Qibing

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 551 KB

english, 2013

13

Identification and Functional Validation of Caldesmon as a Potential Gastric Cancer Metastasis-associated Protein

Hou, Qian, Tan, Hwee Tong, Lim, Kiat Hon, Lim, Teck Kwang, Khoo, Avery, Tan, Iain B.H., Yeoh, Khay Guan, Chung, Maxey C. M.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 2.24 MB

english, 2013

14

pNovo+: De Novo Peptide Sequencing Using Complementary HCD and ETD Tandem Mass Spectra

Chi, Hao, Chen, Haifeng, He, Kun, Wu, Long, Yang, Bing, Sun, Rui-Xiang, Liu, Jianyun, Zeng, Wen-Feng, Song, Chun-Qing, He, Si-Min, Dong, Meng-Qiu

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.72 MB

english, 2013

15

LC–MS/MS Characterization of O-Glycosylation Sites and Glycan Structures of Human Cerebrospinal Fluid Glycoproteins

Halim, Adnan, Rüetschi, Ulla, Larson, Göran, Nilsson, Jonas

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 2.13 MB

english, 2013

16

MS/MS of Synthetic Peptide Is Not Sufficient to Confirm New Types of Protein Modifications

Lee, Sangkyu, Tan, Minjia, Dai, Lunzhi, Kwon, Oh Kwang, Yang, Jeong Soo, Zhao, Yingming, Chen, Yue

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.31 MB

english, 2013

17

Comprehensive Profiling of Protein Lysine Acetylation in Escherichia coli

Zhang, Kai, Zheng, Shuzhen, Yang, Jeong Soo, Chen, Yue, Cheng, Zhongyi

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 3.92 MB

english, 2013

18

A Versatile Mass Spectrometry-Based Method to Both Identify Kinase Client-Relationships and Characterize Signaling Network Topology

Ahsan, Nagib, Huang, Yadong, Tovar-Mendez, Alejandro, Swatek, Kirby N., Zhang, Jingfen, Miernyk, Ján A., Xu, Dong, Thelen, Jay J.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.77 MB

english, 2013

19

Feasibility of Identifying the Tobacco-related Global Metabolome in Blood by UPLC–QTOF-MS

Hsu, Ping-Ching, Zhou, Bin, Zhao, Yi, Ressom, Habtom W., Cheema, Amrita K., Pickworth, Wallace, Shields, Peter G.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.51 MB

english, 2013

20

A Novel Prefractionation Method Combining Protein and Peptide Isoelectric Focusing in Immobilized pH Gradient Strips

Pernemalm, Maria, Lehtiö, Janne

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.37 MB

english, 2013

21

Proteome Wide Purification and Identification of O -GlcNAc-Modified Proteins Using Click Chemistry and Mass Spectrometry

Hahne, Hannes, Sobotzki, Nadine, Nyberg, Tamara, Helm, Dominic, Borodkin, Vladimir S., van Aalten, Daan M. F., Agnew, Brian, Kuster, Bernhard

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 3.22 MB

english, 2013

22

Using Guanidine-Hydrochloride for Fast and Efficient Protein Digestion and Single-step Affinity-purification Mass Spectrometry

Poulsen, Jon W., Madsen, Christian T., Young, Clifford, Poulsen, Flemming M., Nielsen, Michael L.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 3.04 MB

english, 2013

23

Quantitative Phosphoproteomic Analysis of Early Alterations in Protein Phosphorylation by 2,3,7,8-Tetrachlorodibenzo- p -dioxin

Schulz, Melanie, Brandner, Stefanie, Eberhagen, Carola, Eckardt-Schupp, Friederike, Larsen, Martin R., Andrae, Ulrich

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 2.04 MB

english, 2013

24

Secretome Analyses of Aβ 1–42 Stimulated Hippocampal Astrocytes Reveal that CXCL10 is Involved in Astrocyte Migration

Lai, Wenjia, Wu, Jing, Zou, Xiao, Xie, Jian, Zhang, Liwei, Zhao, Xuyang, Zhao, Minzhi, Wang, Qingsong, Ji, Jianguo

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.61 MB

english, 2013

25

Quantitative Targeted Absolute Proteomics-Based Large-Scale Quantification of Proline-Hydroxylated α-Fibrinogen in Plasma for Pancreatic Cancer Diagnosis

Yoneyama, Toshihiro, Ohtsuki, Sumio, Ono, Masaya, Ohmine, Ken, Uchida, Yasuo, Yamada, Tesshi, Tachikawa, Masanori, Terasaki, Tetsuya

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 2.46 MB

english, 2013

26

Shotgun Proteomic Analysis of the Mexican Lime Tree Infected with “ Candidatus Phytoplasma aurantifolia ”

Monavarfeshani, Aboozar, Mirzaei, Mehdi, Sarhadi, Elham, Amirkhani, Ardeshir, Khayam Nekouei, Mojtaba, Haynes, Paul A., Mardi, Mohsen, Salekdeh, Ghasem Hosseini

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.57 MB

english, 2013

27

Proteomics of Pyrococcus furiosus ( Pfu ): Identification of Extracted Proteins by Three Independent Methods

Wong, Catherine C. L., Cociorva, Daniel, Miller, Christine A., Schmidt, Alexander, Monell, Craig, Aebersold, Ruedi, Yates, John R.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 967 KB

english, 2013

28

High-Throughput IgG Fc N-Glycosylation Profiling by Mass Spectrometry of Glycopeptides

Baković, Maja Pučić, Selman, Maurice H. J., Hoffmann, Marcus, Rudan, Igor, Campbell, Harry, Deelder, André M., Lauc, Gordan, Wuhrer, Manfred

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 585 KB

english, 2013

29

Gallic Acid Intake Induces Alterations to Systems Metabolism in Rats

Shi, Xiaohuo, Xiao, Chaoni, Wang, Yulan, Tang, Huiru

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 2.20 MB

english, 2013

30

Chicken Corneocyte Cross-Linked Proteome

Rice, Robert H., Winters, Brett R., Durbin-Johnson, Blythe P., Rocke, David M.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 3.29 MB

english, 2013

31

Quantitative Peptidomics for Discovery of Circadian-Related Peptides from the Rat Suprachiasmatic Nucleus

Lee, Ji Eun, Zamdborg, Leonid, Southey, Bruce R., Atkins, Norman, Mitchell, Jennifer W., Li, Mingxi, Gillette, Martha U., Kelleher, Neil L., Sweedler, Jonathan V.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 312 KB

english, 2013

32

Top-down HPLC–ESI–MS detection of S -Glutathionylated and S -Cysteinylated Derivatives of Cystatin B and Its 1–53 and 54–98 Fragments in Whole Saliva of Human Preterm Newborns

Iavarone, Federica, Cabras, Tiziana, Pisano, Elisabetta, Sanna, Maria Teresa, Nemolato, Sonia, Vento, Giovanni, Tirone, Chiara, Romagnoli, Costantino, Cordaro, Massimo, Fanos, Vassilios, Faa, Gavino,

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.34 MB

english, 2013

33

Correction to iTRAQ-based Quantitative Protein Expression Profiling and MRM Verification of Markers in Type 2 Diabetes

Kaur, Prabhjit, Rizk, Nasser M., Ibrahim, Sereen, Younes, Noura, Uppal, Arushi, Dennis, Kevin, Karve, Tejaswita, Blakeslee, Kenneth, Kwagyan, John, Zirie, Mahmoud, Ressom, Habtom W., Cheema, Amrita K.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 117 KB

english, 2013

34

1 H HR-MAS NMR Spectroscopy of Tumor-Induced Local Metabolic “Field-Effects” Enables Colorectal Cancer Staging and Prognostication

Jiménez, Beatriz, Mirnezami, Reza, Kinross, James, Cloarec, Olivier, Keun, Hector C., Holmes, Elaine, Goldin, Robert D., Ziprin, Paul, Darzi, Ara, Nicholson, Jeremy K.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 3.49 MB

english, 2013

35

Identification and Quantification of Human DNA Repair Protein NEIL1 by Liquid Chromatography/Isotope-Dilution Tandem Mass Spectrometry

Reddy, Prasad T., Jaruga, Pawel, Kirkali, Güldal, Tuna, Gamze, Nelson, Bryant C., Dizdaroglu, Miral

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.69 MB

english, 2013

36

PTRF/Cavin-1 is Essential for Multidrug Resistance in Cancer Cells

Yi, Jae-Sung, Mun, Dong-Gi, Lee, Hyun, Park, Jun-sub, Lee, Jung-Woo, Lee, Jae-Seon, Kim, Su-Jin, Cho, Bong-Rae, Lee, Sang-Won, Ko, Young-Gyu

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 3.52 MB

english, 2013

37

TiO 2 -Based Phosphoproteomic Analysis of Schistosomes: Characterization of Phosphorylated Proteins in the Different Stages and Sex of Schistosoma japonicum

Cheng, Guofeng, Luo, Rong, Hu, Chao, Lin, Jiaojiao, Bai, Zhaofang, Zhang, Beimin, Wang, Hongxia

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 4.86 MB

english, 2013

38

Proteomic Analysis of Early HIV-1 Nucleoprotein Complexes

Schweitzer, Cameron J., Jagadish, Teena, Haverland, Nicole, Ciborowski, Pawel, Belshan, Michael

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 2.09 MB

english, 2013

39

Comparison of Protein Expression Ratios Observed by Sixplex and Duplex TMT Labeling Method

Rauniyar, Navin, Gao, Benbo, McClatchy, Daniel B., Yates, John R.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 950 KB

english, 2013

40

Comprehensive Proteomics Approach in Characterizing and Quantifying Allergenic Proteins from Northern Shrimp: Toward Better Occupational Asthma Prevention

Abdel Rahman, Anas M., Kamath, Sandip D., Gagné, Sébastien, Lopata, Andreas L., Helleur, Robert

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.28 MB

english, 2013

41

Proteome-wide Analysis of Amino Acid Variations That Influence Protein Lysine Acetylation

Suo, Sheng-Bao, Qiu, Jian-Ding, Shi, Shao-Ping, Chen, Xiang, Huang, Shu-Yun, Liang, Ru-Ping

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.08 MB

english, 2013

42

Statistical Inference from Multiple iTRAQ Experiments without Using Common Reference Standards

Herbrich, Shelley M., Cole, Robert N., West, Keith P., Schulze, Kerry, Yager, James D., Groopman, John D., Christian, Parul, Wu, Lee, OâMeally, Robert N., May, Damon H., McIntosh, Martin W., Ruczins

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 2.77 MB

english, 2013

43

Novel Twin-Arginine Translocation Pathway-Dependent Phenotypes of Bacillus subtilis Unveiled by Quantitative Proteomics

Goosens, Vivianne J., Otto, Andreas, Glasner, Corinna, Monteferrante, Carmine C., van der Ploeg, René, Hecker, Michael, Becher, Dörte, van Dijl, Jan Maarten

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 2.34 MB

english, 2013

44

Combining Filter-Aided Sample Preparation and Pseudoshotgun Technology To Profile the Proteome of a Low Number of Early Passage Human Melanoma Cells

Maurer, Margarita, Müller, André C., Wagner, Christine, Huber, Marie L., Rudashevskaya, Elena L., Wagner, Stephan N., Bennett, Keiryn L.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.55 MB

english, 2013

45

Protein Changes in Immunodepleted Cerebrospinal Fluid from a Transgenic Mouse Model of Alexander Disease Detected Using Mass Spectrometry

Cunningham, Robert, Jany, Paige, Messing, Albee, Li, Lingjun

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 975 KB

english, 2013

46

Cellular ERK Phospho-Form Profiles with Conserved Preference for a Switch-Like Pattern

Hahn, Bettina, D’Alessandro, Lorenza Alice, Depner, Sofia, Waldow, Katharina, Boehm, Martin E., Bachmann, Julie, Schilling, Marcel, Klingmüller, Ursula, Lehmann, Wolf D.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.62 MB

english, 2013

47

In-Source Fragmentation and the Sources of Partially Tryptic Peptides in Shotgun Proteomics

Kim, Jong-Seo, Monroe, Matthew E., Camp, David G., Smith, Richard D., Qian, Wei-Jun

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 2.10 MB

english, 2013

48

When Target–Decoy False Discovery Rate Estimations Are Inaccurate and How to Spot Instances

Chalkley, Robert J.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 154 KB

english, 2013