Volume 11; Issue 9

Journal of Proteome Research

Volume 11; Issue 9

1

Comparative Proteomic Profiling of Dystroglycan-Associated Proteins in Wild Type, mdx , and Galgt2 Transgenic Mouse Skeletal Muscle

Yoon, Jung Hae, Johnson, Eric, Xu, Rui, Martin, Laura T., Martin, Paul T., Montanaro, Federica

Journal:

Journal of Proteome Research

Année:

2012

Fichier:

PDF, 1.82 MB

2012

2

Computational Framework for Analysis of Prey–Prey Associations in Interaction Proteomics Identifies Novel Human Protein–Protein Interactions and Networks

Saha, Sudipto, Dazard, Jean-Eudes, Xu, Hua, Ewing, Rob M.

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 2.42 MB

english, 2012

3

LuxS-Dependent AI-2 Regulates Versatile Functions in Enterococcus faecalis V583

Shao, Changlin, Shang, Wei, Yang, Zhan, Sun, Zhongke, Li, Yunmei, Guo, Jing, Wang, Xuesong, Zou, DaYang, Wang, Simiao, Lei, Hong, Cui, Qian, Yin, Zhitao, Li, Xuelian, Wei, Xiao, Liu, Wei, He, Xiang, J

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 845 KB

english, 2012

4

Depletion of Acidic Phosphopeptides by SAX To Improve the Coverage for the Detection of Basophilic Kinase Substrates

Dong, Mingming, Ye, Mingliang, Cheng, Kai, Song, Chunxia, Pan, Yanbo, Wang, Chunli, Bian, Yangyang, Zou, Hanfa

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 897 KB

english, 2012

5

Synaptic Protein Ubiquitination in Rat Brain Revealed by Antibody-based Ubiquitome Analysis

Na, Chan Hyun, Jones, Drew R., Yang, Yanling, Wang, Xusheng, Xu, Yanji, Peng, Junmin

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 933 KB

english, 2012

6

Bioinformatic Challenges in Targeted Proteomics

Reker, Daniel, Malmström, Lars

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 639 KB

english, 2012

7

Proteomic View of the Venom from the Fire Ant Solenopsis invicta Buren

dos Santos Pinto, José R. A., Fox, Eduardo G. P., Saidemberg, Daniel M., Santos, Lucilene D., da Silva Menegasso, Anally R., Costa-Manso, Eliúde, Machado, Ednildo A., Bueno, Odair C., Palma, Mario S.

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 2.98 MB

english, 2012

8

Pharmacometabonomic Characterization of Xenobiotic and Endogenous Metabolic Phenotypes That Account for Inter-individual Variation in Isoniazid-Induced Toxicological Response

Cunningham, Katharine, Claus, Sandrine P., Lindon, John C., Holmes, Elaine, Everett, Jeremy R., Nicholson, Jeremy K., Coen, Muireann

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 3.42 MB

english, 2012

9

Higher Energy Collision Dissociation (HCD) Product Ion-Triggered Electron Transfer Dissociation (ETD) Mass Spectrometry for the Analysis of N -Linked Glycoproteins

Singh, Charandeep, Zampronio, Cleidiane G., Creese, Andrew J., Cooper, Helen J.

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 377 KB

english, 2012

10

Resveratrol-Induced Changes of the Human Adipocyte Secretion Profile

Rosenow, Anja, Noben, Jean-Paul, Jocken, Johan, Kallendrusch, Sonja, Fischer-Posovszky, Pamela, Mariman, Edwin C.M., Renes, Johan

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 3.75 MB

english, 2012

11

Large-scale Identification of N- Glycosylated Proteins of Mouse Tissues and Construction of a Glycoprotein Database, GlycoProtDB

Kaji, Hiroyuki, Shikanai, Toshihide, Sasaki-Sawa, Akiko, Wen, Hongling, Fujita, Mika, Suzuki, Yoshinori, Sugahara, Daisuke, Sawaki, Hiromichi, Yamauchi, Yoshio, Shinkawa, Takashi, Taoka, Masato, Takah

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 3.28 MB

english, 2012

12

In situ Identification and Localization of IGHA2 in the Breast Tumor Microenvironment by Mass Spectrometry

Kang, Suki, Maeng, Heysun, Kim, Baek Gil, Qing, Gao Ming, Choi, Yoon Pyo, Kim, Hak Yong, Kim, Pan Soo, Kim, Yangsun, Kim, Young Hwan, Choi, Young Deuk, Cho, Nam Hoon

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 469 KB

english, 2012

13

Serum Metabolic Signatures of Fulminant Type 1 Diabetes

Lu, Jingyi, Zhou, Jian, Bao, Yuqian, Chen, Tianlu, Zhang, Yinan, Zhao, Aihua, Qiu, Yunping, Xie, Guoxiang, Wang, Congrong, Jia, Wei, Jia, Weiping

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 1.67 MB

english, 2012

14

Mitochondrial Proteomic Analysis of Cisplatin Resistance in Ovarian Cancer

Chappell, Nicole P., Teng, Pang-ning, Hood, Brian L., Wang, Guisong, Darcy, Kathleen M., Hamilton, Chad A., Maxwell, G. Larry, Conrads, Thomas P.

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 2.92 MB

english, 2012

15

Dynamic Changes of the Caenorhabditis elegans Proteome during Ontogenesis Assessed by Quantitative Analysis with 15 N Metabolic Labeling

Geillinger, Kerstin E., Kuhlmann, Katja, Eisenacher, Martin, Meyer, Helmut E., Daniel, Hannelore, Spanier, Britta

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 1.96 MB

english, 2012

16

Identification and Confirmation of Differentially Expressed Fucosylated Glycoproteins in the Serum of Ovarian Cancer Patients Using a Lectin Array and LC–MS/MS

Wu, Jing, Xie, Xiaolei, Liu, Yashu, He, Jintang, Benitez, Ricardo, Buckanovich, Ronald J., Lubman, David M.

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 4.76 MB

english, 2012

17

CcpA-Mediated Enhancement of Sugar and Amino Acid Metabolism in Lysinibacillus sphaericus by NMR-Based Metabolomics

Li, Jing, Huang, Chongyang, Zheng, Dasheng, Wang, Yulan, Yuan, Zhiming

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 2.76 MB

english, 2012

18

Differential Proteomic Analysis of a Polymicrobial Biofilm

Zainal-Abidin, Zamirah, Veith, Paul D., Dashper, Stuart G., Zhu, Ying, Catmull, Deanne V., Chen, Yu-Yen, Heryanto, Deasy C., Chen, Dina, Pyke, James S., Tan, Kheng, Mitchell, Helen L., Reynolds, Eric

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 1.87 MB

english, 2012

19

Proteomic Analysis of Differences in Ectoderm and Mesoderm Membranes by DiGE

Wang, Renee, Liu, Xiaoyong, Küster-Schöck, Elke, Fagotto, François

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 1.16 MB

english, 2012

20

A Genome-Wide Regulator–DNA Interaction Network in the Human Pathogen Mycobacterium tuberculosis H37Rv

Zeng, Jumei, Cui, Tao, He, Zheng-Guo

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 3.28 MB

english, 2012

21

Lacto- N -Tetraose, Fucosylation, and Secretor Status Are Highly Variable in Human Milk Oligosaccharides From Women Delivering Preterm

De Leoz, Maria Lorna A., Gaerlan, Stephanie C., Strum, John S., Dimapasoc, Lauren M., Mirmiran, Majid, Tancredi, Daniel J., Smilowitz, Jennifer T., Kalanetra, Karen M., Mills, David A., German, J. Bru

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 2.81 MB

english, 2012

22

Monoisotopic Mass Determination Algorithm for Selenocysteine-Containing Polypeptides from Mass Spectrometric Data Based on Theoretical Modeling of Isotopic Peak Intensity Ratios

Kim, Jin Wook, Lee, Sunho, Park, Kunsoo, Na, Seungjin, Paek, Eunok, Park, Hyung Seo, Park, Heejin, Lee, Kong-Joo, Jeong, Jaeho, Kim, Hwa-Young

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 2.58 MB

english, 2012

23

MS-Simulator: Predicting Y -Ion Intensities for Peptides with Two Charges Based on the Intensity Ratio of Neighboring Ions

Sun, Shiwei, Yang, Fuquan, Yang, Qing, Zhang, Hong, Wang, Yaojun, Bu, Dongbo, Ma, Bin

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 1.27 MB

english, 2012

24

Comparison of One- and Two-dimensional Liquid Chromatography Approaches in the Label-free Quantitative Analysis of Methylocella silvestris

Patel, Nisha A., Crombie, Andrew, Slade, Susan E., Thalassinos, Konstantinos, Hughes, Chris, Connolly, Joanne B., Langridge, James, Murrell, J. Colin, Scrivens, James H.

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 1.04 MB

english, 2012

25

Urinary Metabolic Phenotyping the slc26a6 (Chloride–Oxalate Exchanger) Null Mouse Model

Garcia-Perez, Isabel, Villaseñor, Alma, Wijeyesekera, Anisha, Posma, Joram M., Jiang, Zhirong, Stamler, Jeremiah, Aronson, Peter, Unwin, Robert, Barbas, Coral, Elliott, Paul, Nicholson, Jeremy, Holmes

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 4.06 MB

english, 2012

26

Western Honeybee Drones and Workers ( Apis mellifera ligustica) Have Different Olfactory Mechanisms than Eastern Honeybees ( Apis cerana cerana )

Woltedji, Dereje, Song, Feifei, Zhang, Lan, Gala, Alemayehu, Han, Bin, Feng, Mao, Fang, Yu, Li, Jianke

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 2.88 MB

english, 2012

27

Spiked-in Pulsed in Vivo Labeling Identifies a New Member of the CCN Family in Regenerating Newt Hearts

Looso, Mario, Michel, Christian S., Konzer, Anne, Bruckskotten, Marc, Borchardt, Thilo, Krüger, Marcus, Braun, Thomas

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 1.45 MB

english, 2012

28

Stable Isotope Labeling with Amino Acids in Drosophila for Quantifying Proteins and Modifications

Xu, Ping, Tan, Huiping, Duong, Duc M., Yang, Yanling, Kupsco, Jeremy, Moberg, Kenneth H., Li, He, Jin, Peng, Peng, Junmin

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 3.16 MB

english, 2012

29

Effects of the miR-143/-145 MicroRNA Cluster on the Colon Cancer Proteome and Transcriptome

Bauer, Kerry M., Hummon, Amanda B.

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 2.94 MB

english, 2012

30

Fludarabine and Cladribine Induce Changes in Surface Proteins on Human B-Lymphoid Cell Lines Involved with Apoptosis, Cell Survival, and Antitumor Immunity

Kohnke, Philippa L., Mactier, Swetlana, Almazi, Juhura G., Crossett, Ben, Christopherson, Richard I.

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 4.44 MB

english, 2012

31

Correction to Protein Identification Using Customized Protein Sequence Databases Derived from RNA-Seq Data

Wang, Xiaojing, Slebos, Robbert J. C., Wang, Dong, Halvey, Patrick J., Tabb, David L., Liebler, Daniel C., Zhang, Bing

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 310 KB

english, 2012

32

PILOT_PROTEIN: Identification of Unmodified and Modified Proteins via High-Resolution Mass Spectrometry and Mixed-Integer Linear Optimization

Baliban, Richard C., DiMaggio, Peter A., Plazas-Mayorca, Mariana D., Garcia, Benjamin A., Floudas, Christodoulos A.

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 2.06 MB

english, 2012

33

Learning Score Function Parameters for Improved Spectrum Identification in Tandem Mass Spectrometry Experiments

Spivak, Marina, Bereman, Michael S., MacCoss, Michael J., Noble, William Stafford

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 1.67 MB

english, 2012

34

Systems Responses of Rats to Mequindox Revealed by Metabolic and Transcriptomic Profiling

Zhao, Xiu-Ju, Hao, Fuhua, Huang, Chongyang, Rantalainen, Mattias, Lei, Hehua, Tang, Huiru, Wang, Yulan

Journal:

Journal of Proteome Research

Année:

2012

Langue:

english

Fichier:

PDF, 1.29 MB

english, 2012