Volume 10; Issue 8

Journal of Proteome Research

Volume 10; Issue 8

1

Model for Membrane Organization and Protein Sorting in the Cyanobacterium Synechocystis sp. PCC 6803 Inferred from Proteomics and Multivariate Sequence Analyses

Pisareva, Tatiana, Kwon, Joseph, Oh, Jihyun, Kim, Soohyun, Ge, Changrong, Wieslander, Åke, Choi, Jong-Soon, Norling, Birgitta

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1008 KB

english, 2011

2

Variation in Antibiotic-Induced Microbial Recolonization Impacts on the Host Metabolic Phenotypes of Rats

Swann, Jonathan R., Tuohy, Kieran M., Lindfors, Peter, Brown, Duncan T., Gibson, Glenn R., Wilson, Ian D., Sidaway, James, Nicholson, Jeremy K., Holmes, Elaine

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.22 MB

english, 2011

3

Metabolic Profiling Uncovers a Phenotypic Signature of Small for Gestational Age in Early Pregnancy

Horgan, Richard P, Broadhurst, David I., Walsh, Sarah K., Dunn, Warwick B., Brown, Marie, Roberts, Claire T., North, Robyn A., McCowan, Lesley M., Kell, Douglas B., Baker, Philip N.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.04 MB

english, 2011

4

Development of a Novel Proteomic Approach for Mitochondrial Proteomics from Cardiac Tissue from Patients with Atrial Fibrillation

Goudarzi, Maryam, Ross, Mark M., Zhou, Weidong, Van Meter, Amy, Deng, Jianghong, Martin, Lisa M., Martin, Chidima, Liotta, Lance, Petricoin, Emanuel, Ad, Niv

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 4.66 MB

english, 2011

5

An Introduction to Membrane Proteins†

Hedin, Linnea E., Illergård, Kristoffer, Elofsson, Arne

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 950 KB

english, 2011

6

Bioinformatics Analysis of a Saccharomyces cerevisiae N-Terminal Proteome Provides Evidence of Alternative Translation Initiation and Post-Translational N-Terminal Acetylation

Helsens, Kenny, Van Damme, Petra, Degroeve, Sven, Martens, Lennart, Arnesen, Thomas, Vandekerckhove, Joël, Gevaert, Kris

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.65 MB

english, 2011

7

Metabolic Flux Analysis and Visualization †

Toya, Yoshihiro, Kono, Nobuaki, Arakawa, Kazuharu, Tomita, Masaru

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.67 MB

english, 2011

8

Proteomic Characterization of Human Milk Fat Globule Membrane Proteins during a 12 Month Lactation Period

Liao, Yalin, Alvarado, Rudy, Phinney, Brett, Lönnerdal, Bo

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.05 MB

english, 2011

9

Metabolic Biomarkers of Prenatal Disorders: An Exploratory NMR Metabonomics Study of Second Trimester Maternal Urine and Blood Plasma

Diaz, Sílvia O., Pinto, Joana, Graça, Gonçalo, Duarte, Iola F., Barros, António S., Galhano, Eulália, Pita, Cristina, Almeida, Maria do Céu, Goodfellow, Brian J., Carreira, Isabel M., Gil, Ana M

Journal:

Journal of Proteome Research

Année:

2011

Fichier:

PDF, 27 KB

2011

10

Mehercules, adhuc Bacchus ! The Debate on Wine Proteomics Continues

D’Amato, Alfonsina, Fasoli, Elisa, Kravchuk, Alexander V., Righetti, Pier Giorgio

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.55 MB

english, 2011

11

Proteomic and Functional Analyses Reveal a Unique Lifestyle for Acinetobacter baumannii Biofilms and a Key Role for Histidine Metabolism

Cabral, Maria P., Soares, Nelson C., Aranda, Jesús, Parreira, José R., Rumbo, Carlos, Poza, Margarita, Valle, Jaione, Calamia, Valentina, Lasa, Íñigo, Bou, Germán

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.69 MB

english, 2011

12

Multicompartmental LC-Q-TOF-Based Metabonomics as an Exploratory Tool to Identify Novel Pathways Affected by Polyphenol-Rich Diets in Mice

Jové, Mariona, Serrano, José C. E., Ortega, Nàdia, Ayala, Victòria, Anglès, Neus, Reguant, Jordi, Morelló, José R., Romero, Maria Paz, Motilva, Maria José, Prat, Joan, Pamplona, Reinald, Porte

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 5.29 MB

english, 2011

13

Highly Sensitive Proteome Analysis of FACS-Sorted Adult Colon Stem Cells

Di Palma, Serena, Stange, Daniel, van de Wetering, Marc, Clevers, Hans, Heck, Albert J. R., Mohammed, Shabaz

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.55 MB

english, 2011

14

Comparative Proteome Cataloging of Lactobacillus rhamnosus Strains GG and Lc705

Savijoki, Kirsi, Lietzén, Niina, Kankainen, Matti, Alatossava, Tapani, Koskenniemi, Kerttu, Varmanen, Pekka, Nyman, Tuula A.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.50 MB

english, 2011

15

Oleate-Induced Beta Cell Dysfunction and Apoptosis: A Proteomic Approach to Glucolipotoxicity by an Unsaturated Fatty Acid

Maris, Michael, Waelkens, Etienne, Cnop, Miriam, D’Hertog, Wannes, Cunha, Daniel A., Korf, Hannelie, Koike, Tatsuro, Overbergh, Lut, Mathieu, Chantal

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.49 MB

english, 2011

16

Proteomic Characterization of Influenza H5N1 Virus-like Particles and Their Protective Immunogenicity

Song, Jae-Min, Choi, Chi-Won, Kwon, Sang-Oh, Compans, Richard. W., Kang, Sang-Moo, Kim, Seung Il

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.51 MB

english, 2011

17

The International Proteomics Tutorial Programme – Reaching Out to the Next Generation Proteome Scientists

James, Peter, Marko-Varga, György A.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 630 KB

english, 2011

18

MALDI-MS-Imaging of Whole Human Lens Capsule

Ronci, Maurizio, Sharma, Shiwani, Chataway, Tim, Burdon, Kathryn P., Martin, Sarah, Craig, Jamie E., Voelcker, Nicolas H.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.19 MB

english, 2011

19

Improvements in Proteomic Metrics of Low Abundance Proteins through Proteome Equalization Using ProteoMiner Prior to MudPIT

Fonslow, Bryan R., Carvalho, Paulo C., Academia, Katrina, Freeby, Steve, Xu, Tao, Nakorchevsky, Aleksey, Paulus, Aran, Yates, John R.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.30 MB

english, 2011

20

Imaging Mass Spectrometry Provides Fingerprints for Distinguishing Hepatocellular Carcinoma from Cirrhosis

Le Faouder, Julie, Laouirem, Samira, Chapelle, Manuel, Albuquerque, Miguel, Belghiti, Jacques, Degos, Françoise, Paradis, Valérie, Camadro, Jean-Michel, Bedossa, Pierre

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.97 MB

english, 2011

21

Structural Analysis of a Prokaryotic Ribosome Using a Novel Amidinating Cross-Linker and Mass Spectrometry

Lauber, Matthew A., Reilly, James P.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 4.17 MB

english, 2011

22

Identification and Quantification of DNA Repair Proteins by Liquid Chromatography/Isotope-Dilution Tandem Mass Spectrometry Using Their Fully 15 N-Labeled Analogues as Internal Standards

Dizdaroglu, Miral, Reddy, Prasad T., Jaruga, Pawel

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.00 MB

english, 2011

23

iTRAQ–2DLC–ESI–MS/MS Based Identification of a New Set of Immunohistochemical Biomarkers for Classification of Dysplastic Nodules and Small Hepatocellular Carcinoma

Jin, Guang-Zhi, Li, Yan, Cong, Wen-Ming, Yu, Hua, Dong, Hui, Shu, Hong, Liu, Xiao-Hui, Yan, Guo-Quan, Zhang, Lei, Zhang, Yang, Kang, Xiao-Nan, Guo, Kun, Wang, Zhe-Dong, Yang, Peng-Yuan, Liu, Yin-Kun

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 4.96 MB

english, 2011

24

Mapping the Subcellular Protein Distribution in Three Human Cell Lines

Fagerberg, Linn, Stadler, Charlotte, Skogs, Marie, Hjelmare, Martin, Jonasson, Kalle, Wiking, Mikaela, Åbergh, Annica, Uhlén, Mathias, Lundberg, Emma

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 8.10 MB

english, 2011

25

Expression Profiling and Regulation of Genes Related to Silkworm Posterior Silk Gland Development and Fibroin Synthesis

Li, Jian-ying, Yang, Hui-juan, Lan, Tian-yun, Wei, Hao, Zhang, Hua-rong, Chen, Ming, Fan, Wei, Ma, Ying-ying, Zhong, Bo-xiong

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 5.47 MB

english, 2011

26

Components of Complex Lipid Biosynthetic Pathways in Developing Castor ( Ricinus communis ) Seeds Identified by MudPIT Analysis of Enriched Endoplasmic Reticulum

Brown, Adrian P., Kroon, Johan T. M., Topping, Jennifer F., Robson, Joanne L., Simon, William J., Slabas, Antoni R.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.43 MB

english, 2011

27

The Cardiac Sodium Channel Is Post-Translationally Modified by Arginine Methylation

Beltran-Alvarez, Pedro, Pagans, Sara, Brugada, Ramon

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.75 MB

english, 2011

28

Structural Determinants of Limited Proteolysis

Kazanov, Marat D., Igarashi, Yoshinobu, Eroshkin, Alexey M., Cieplak, Piotr, Ratnikov, Boris, Zhang, Ying, Li, Zhanwen, Godzik, Adam, Osterman, Andrei L., Smith, Jeffrey W.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.84 MB

english, 2011

29

Comparison of ERLIC–TiO 2 , HILIC–TiO 2 , and SCX–TiO 2 for Global Phosphoproteomics Approaches

Zarei, Mostafa, Sprenger, Adrian, Metzger, Fabian, Gretzmeier, Christine, Dengjel, Joern

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 4.18 MB

english, 2011

30

Biospecimen Reporting for Improved Study Quality (BRISQ)

Moore, Helen M., Kelly, Andrea B., Jewell, Scott D., McShane, Lisa M., Clark, Douglas P., Greenspan, Renata, Hayes, Daniel F., Hainaut, Pierre, Kim, Paula, Mansfield, Elizabeth, Potapova, Olga, Riegma

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 5.05 MB

english, 2011

31

Differential Expression of Odorant-Binding Proteins in the Mandibular Glands of the Honey Bee According to Caste and Age

Iovinella, Immacolata, Dani, Francesca Romana, Niccolini, Alberto, Sagona, Simona, Michelucci, Elena, Gazzano, Angelo, Turillazzi, Stefano, Felicioli, Antonio, Pelosi, Paolo

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.49 MB

english, 2011

32

thermo-msf-parser: An Open Source Java Library to Parse and Visualize Thermo Proteome Discoverer msf Files

Colaert, Niklaas, Barsnes, Harald, Vaudel, Marc, Helsens, Kenny, Timmerman, Evy, Sickmann, Albert, Gevaert, Kris, Martens, Lennart

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 4.46 MB

english, 2011

33

Metabolic Labeling of Chondrocytes for the Quantitative Analysis of the Interleukin-1-beta-mediated Modulation of Their Intracellular and Extracellular Proteomes

Calamia, Valentina, Rocha, Beatriz, Mateos, Jesús, Fernández-Puente, Patricia, Ruiz-Romero, Cristina, Blanco, Francisco J.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 4.74 MB

english, 2011

34

Multiplexed Analytical Glycomics: Rapid and Confident IgG N -Glycan Structural Elucidation

Mittermayr, Stefan, Bones, Jonathan, Doherty, Margaret, Guttman, András, Rudd, Pauline M.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.40 MB

english, 2011

35

Major Remodelling of the Murine Stem Cell Kinome Following Differentiation in the Hematopoietic Compartment

Hazen, Amy L., Diks, Sander H., Wahle, Joseph A., Fuhler, Gwenny M., Peppelenbosch, Maikel P., Kerr, William G.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.13 MB

english, 2011

36

Inverse Regulation in the Metabolic Genes pckA and metE Revealed by Proteomic Analysis of the Salmonella RcsCDB Regulon

Paradela, Alberto, Mariscotti, Javier F., Navajas, Rosana, Ramos-Fernández, Antonio, Albar, Juan Pablo, García-del Portillo, Francisco

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.58 MB

english, 2011

37

In Vitro Metabonomic Study Detects Increases in UDP-GlcNAc and UDP-GalNAc, as Early Phase Markers of Cisplatin Treatment Response in Brain Tumor Cells

Pan, Xiaoyan, Wilson, Martin, Mirbahai, Ladan, McConville, Carmel, Arvanitis, Theodoros N., Griffin, Julian L., Kauppinen, Risto A., Peet, Andrew C.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.95 MB

english, 2011

38

Identification of Guanylate-Binding Protein 1 as a Potential Oral Cancer Marker Involved in Cell Invasion Using Omics-Based Analysis

Yu, Chia-Jung, Chang, Kai-Ping, Chang, Yin-Ju, Hsu, Chia-Wei, Liang, Ying, Yu, Jau-Song, Chi, Lang-Ming, Chang, Yu-Sun, Wu, Chih-Ching

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 4.86 MB

english, 2011

39

Probabilistic Consensus Scoring Improves Tandem Mass Spectrometry Peptide Identification

Nahnsen, Sven, Bertsch, Andreas, Rahnenführer, Jörg, Nordheim, Alfred, Kohlbacher, Oliver

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.02 MB

english, 2011

40

Dynamic Metabolic Transformation in Tumor Invasion and Metastasis in Mice with LM-8 Osteosarcoma Cell Transplantation

Hua, Yingqi, Qiu, Yunping, Zhao, Aihua, Wang, Xiaoyan, Chen, Tianlu, Zhang, Zhiyu, Chi, Yi, Li, Quan, Sun, Wei, Li, Guodong, Cai, Zhengdong, Zhou, Zhanxiang, Jia, Wei

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.27 MB

english, 2011

41

Functional Proteomics of Neuropeptidome Dynamics during the Feeding Process of Rhodnius prolixus

Sterkel, Marcos, Urlaub, Henning, Rivera-Pomar, Rolando, Ons, Sheila

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.87 MB

english, 2011

42

Proteomics Reveals a Role for the RNA Helicase crhR in the Modulation of Multiple Metabolic Pathways during Cold Acclimation of Synechocystis sp. PCC6803

Rowland, John G., Simon, William J., Prakash, Jogadhenu S. S., Slabas, Antoni R.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.51 MB

english, 2011

43

Quantitative iTRAQ Analysis of Retinal Ganglion Cell Degeneration after Optic Nerve Crush

Magharious, Mark, D’Onofrio, Philippe M., Hollander, Adam, Zhu, Peihong, Chen, Jian, Koeberle, Paulo D.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 7.06 MB

english, 2011

44

Quantitative Analysis of Cohesin Complex Stoichiometry and SMC3 Modification-Dependent Protein Interactions

Ding, Chen, Li, Yehua, Kim, Beom-Jun, Malovannaya, Anna, Jung, Sung Yun, Wang, Yi, Qin, Jun

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.23 MB

english, 2011

45

On Using Samples of Known Protein Content to Assess the Statistical Calibration of Scores Assigned to Peptide-Spectrum Matches in Shotgun Proteomics

Granholm, Viktor, Noble, William Stafford, Käll, Lukas

Journal:

Journal of Proteome Research

Année:

2011

Fichier:

PDF, 598 KB

2011

46

NMR Analysis of a Stress Response Metabolic Signaling Network

Zhang, Bo, Halouska, Steven, Schiaffo, Charles E., Sadykov, Marat R., Somerville, Greg A., Powers, Robert

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.24 MB

english, 2011

47

Protein Phosphorylation Is a Key Event of Flagellar Disassembly Revealed by Analysis of Flagellar Phosphoproteins during Flagellar Shortening in Chlamydomonas

Pan, Junmin, Naumann-Busch, Bianca, Wang, Liang, Specht, Michael, Scholz, Martin, Trompelt, Kerstin, Hippler, Michael

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.59 MB

english, 2011

48

Proteomic Analyses of Lung Lysates from Short-Term Exposure of Fischer 344 Rats to Cigarette Smoke

Carter, Charleata A., Misra, Manoj, Pelech, Steven

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 4.80 MB

english, 2011

49

Validation of Peptide MS/MS Spectra Using Metabolic Isotope Labeling for Spectral Matching-Based Shotgun Proteome Analysis

Xu, Mingguo, Li, Liang

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.79 MB

english, 2011