Volume 10; Issue 7

Journal of Proteome Research

Volume 10; Issue 7

1

High Recovery FASP Applied to the Proteomic Analysis of Microdissected Formalin Fixed Paraffin Embedded Cancer Tissues Retrieves Known Colon Cancer Markers

Wiśniewski, Jacek R., Ostasiewicz, Pawel, Mann, Matthias

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 4.58 MB

english, 2011

2

Comprehensive Identification of Glycated Peptides and Their Glycation Motifs in Plasma and Erythrocytes of Control and Diabetic Subjects

Zhang, Qibin, Monroe, Matthew E., Schepmoes, Athena A., Clauss, Therese R. W., Gritsenko, Marina A., Meng, Da, Petyuk, Vladislav A., Smith, Richard D., Metz, Thomas O.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.12 MB

english, 2011

3

MSSimulator: Simulation of Mass Spectrometry Data

Bielow, Chris, Aiche, Stephan, Andreotti, Sandro, Reinert, Knut

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.10 MB

english, 2011

4

Differences in Metabolism between the Biofilm and Planktonic Response to Metal Stress

Booth, Sean C., Workentine, Matthew L., Wen, Jing, Shaykhutdinov, Rustem, Vogel, Hans J., Ceri, Howard, Turner, Raymond J., Weljie, Aalim M.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.29 MB

english, 2011

5

Secretome Signature of Invasive Glioblastoma Multiforme

Formolo, Catherine A., Williams, Russell, Gordish-Dressman, Heather, MacDonald, Tobey J., Lee, Norman H., Hathout, Yetrib

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.67 MB

english, 2011

6

Proteomics Approach to Identify the Interacting Partners of Cellular Prion Protein and Characterization of Rab7a Interaction in Neuronal Cells

Zafar, Saima, von Ahsen, Nicolas, Oellerich, Michael, Zerr, Inga, Schulz-Schaeffer, Walter J., Armstrong, Victor W., Asif, Abdul R.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.87 MB

english, 2011

7

ABA-Dependent and -Independent G-Protein Signaling in Arabidopsis Roots Revealed through an iTRAQ Proteomics Approach

Alvarez, Sophie, Hicks, Leslie M., Pandey, Sona

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.91 MB

english, 2011

8

Comparative Proteomic Analysis Implicates COMMD Proteins as Epstein–Barr Virus Targets in the BL41 Burkitt’s Lymphoma Cell Line

Gkiafi, Zacharati, Panayotou, George

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.52 MB

english, 2011

9

Cell Type-Specific and Site Directed N -Glycosylation Pattern of FcγRIIIa

Zeck, Anne, Pohlentz, Gottfried, Schlothauer, Tilman, Peter-Katalinić, Jasna, Regula, Jörg Thomas

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.95 MB

english, 2011

10

Novel Comprehensive Approach for Accessible Biomarker Identification and Absolute Quantification from Precious Human Tissues

Turtoi, Andrei, Dumont, Bruno, Greffe, Yannick, Blomme, Arnaud, Mazzucchelli, Gabriel, Delvenne, Philippe, Mutijima, Eugène Nzaramba, Lifrange, Eric, De Pauw, Edwin, Castronovo, Vincent

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 7.01 MB

english, 2011

11

RIBAR and xRIBAR: Methods for Reproducible Relative MS/MS-based Label-Free Protein Quantification

Colaert, Niklaas, Gevaert, Kris, Martens, Lennart

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.42 MB

english, 2011

12

Comparative Secretome Investigation of Magnaporthe oryzae Proteins Responsive to Nitrogen Starvation

Wang, Yiming, Wu, Jingni, Park, Zee Yong, Kim, Sang Gon, Rakwal, Randeep, Agrawal, Ganesh Kumar, Kim, Sun Tae, Kang, Kyu Young

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.12 MB

english, 2011

13

PeaksPTM: Mass Spectrometry-Based Identification of Peptides with Unspecified Modifications

Han, Xi, He, Lin, Xin, Lei, Shan, Baozhen, Ma, Bin

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.01 MB

english, 2011

14

IsoformResolver: A Peptide-Centric Algorithm for Protein Inference

Meyer-Arendt, Karen, Old, William M., Houel, Stephane, Renganathan, Kutralanathan, Eichelberger, Brian, Resing, Katheryn A., Ahn, Natalie G.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.51 MB

english, 2011

15

Comprehensive LC–MS E Lipidomic Analysis using a Shotgun Approach and Its Application to Biomarker Detection and Identification in Osteoarthritis Patients

Castro-Perez, Jose M., Kamphorst, Jurre, DeGroot, Jeroen, Lafeber, Floris, Goshawk, Jeff, Yu, Kate, Shockcor, John P., Vreeken, Rob J., Hankemeier, Thomas

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 683 KB

english, 2011

16

Macrophage Bridging Conduit Trafficking of HIV-1 Through the Endoplasmic Reticulum and Golgi Network

Kadiu, Irena, Gendelman, Howard E.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 9.13 MB

english, 2011

17

Proteomic Characterization of Early Changes Induced by Triiodothyronine in Rat Liver

Severino, Valeria, Locker, Joseph, Ledda-Columbano, Giovanna M., Columbano, Amedeo, Parente, Augusto, Chambery, Angela

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.60 MB

english, 2011

18

Multiple Reaction Monitoring Assay for Pre-eclampsia Related Calcyclin Peptides in Formalin Fixed Paraffin Embedded Placenta

Güzel, Coşkun, Ursem, Nicolette T. C., Dekker, Lennard J., Derkx, Pieter, Joore, Jos, van Dijk, Evert, Ligtvoet, Gerard, Steegers, Eric A. P., Luider, Theo M.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.87 MB

english, 2011

19

MAPA Distinguishes Genotype-Specific Variability of Highly Similar Regulatory Protein Isoforms in Potato Tuber

Hoehenwarter, Wolfgang, Larhlimi, Abdelhalim, Hummel, Jan, Egelhofer, Volker, Selbig, Joachim, van Dongen, Joost T., Wienkoop, Stefanie, Weckwerth, Wolfram

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.90 MB

english, 2011

20

MSblender: A Probabilistic Approach for Integrating Peptide Identifications from Multiple Database Search Engines

Kwon, Taejoon, Choi, Hyungwon, Vogel, Christine, Nesvizhskii, Alexey I., Marcotte, Edward M.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.98 MB

english, 2011

21

Advancing Next-Generation Proteomics through Computational Research

Bandeira, Nuno, Nesvizhskii, Alexey, McIntosh, Martin

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 611 KB

english, 2011

22

Protein Pathway Activation Mapping of Brain Metastasis from Lung and Breast Cancers Reveals Organ Type Specific Drug Target Activation

Improta, Giuseppina, Zupa, Angela, Fillmore, Helen, Deng, Jianghong, Aieta, Michele, Musto, Pellegrino, Liotta, Lance A., Broaddus, William, Petricoin, Emanuel F., Wulfkuhle, Julia D.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 4.34 MB

english, 2011

23

Metabolomic Approach by 1 H NMR Spectroscopy of Serum for the Assessment of Chronic Liver Failure in Patients with Cirrhosis

Amathieu, Roland, Nahon, Pierre, Triba, Mohamed, Bouchemal, Nadia, Trinchet, Jean-Claude, Beaugrand, Michel, Dhonneur, Gilles, Le Moyec, Laurence

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.58 MB

english, 2011

24

Offspring Metabolomic Response to Maternal Protein Restriction in a Rat Model of Intrauterine Growth Restriction (IUGR)

Alexandre-Gouabau, Marie-Cécile, Courant, Frédérique, Le Gall, Gwénaëlle, Moyon, Thomas, Darmaun, Dominique, Parnet, Patricia, Coupé, Bérengère, Antignac, Jean-Philippe

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.78 MB

english, 2011

25

QuickMod: A Tool for Open Modification Spectrum Library Searches

Ahrné, Erik, Nikitin, Frederic, Lisacek, Frederique, Müller, Markus

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.61 MB

english, 2011

26

Discovery of Neuropeptides in the Nematode Ascaris suum by Database Mining and Tandem Mass Spectrometry

Jarecki, Jessica L., Frey, Brian L., Smith, Lloyd M., Stretton, Antony O.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.69 MB

english, 2011

27

Label-Free Protein Profiling of Adipose-Derived Human Stem Cells under Hyperosmotic Treatment

Oswald, Elizabeth S., Brown, Lewis M., Bulinski, J. Chloë, Hung, Clark T.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 4.38 MB

english, 2011

28

Antennal Proteome Comparison of Sexually Mature Drone and Forager Honeybees

Feng, Mao, Song, Feifei, Aleku, Dereje Woltedji, Han, Bin, Fang, Yu, Li, Jianke

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.55 MB

english, 2011

29

Analysis of the Arabidopsis Cytosolic Proteome Highlights Subcellular Partitioning of Central Plant Metabolism

Ito, Jun, Batth, Tanveer S., Petzold, Christopher J., Redding-Johanson, Alyssa M., Mukhopadhyay, Aindrila, Verboom, Robert, Meyer, Etienne H., Millar, A. Harvey, Heazlewood, Joshua L.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 605 KB

english, 2011

30

Combined Serum and Tissue Proteomic Study Applied to a c-Myc Transgenic Mouse Model of Hepatocellular Carcinoma Identified Novel Disease Regulated Proteins Suitable for Diagnosis and Therapeutic Intervention Strategies

Ritorto, Maria Stella, Borlak, Jürgen

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.79 MB

english, 2011

31

Conformational Role for the C-Terminal Tail of the Intrinsically Disordered High Mobility Group A (HMGA) Chromatin Factors

Maurizio, Elisa, Cravello, Laetitia, Brady, Liam, Spolaore, Barbara, Arnoldo, Laura, Giancotti, Vincenzo, Manfioletti, Guidalberto, Sgarra, Riccardo

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 4.96 MB

english, 2011

32

ScanRanker: Quality Assessment of Tandem Mass Spectra via Sequence Tagging

Ma, Ze-Qiang, Chambers, Matthew C., Ham, Amy-Joan L., Cheek, Kristin L., Whitwell, Corbin W., Aerni, Hans-Rudolf, Schilling, Birgit, Miller, Aaron W., Caprioli, Richard M., Tabb, David L.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.02 MB

english, 2011

33

Mass Spectrometric Determination of IgG Subclass-Specific Glycosylation Profiles in Siblings Discordant for Myositis Syndromes

Perdivara, Irina, Peddada, Shyamal D., Miller, Frederick W., Tomer, Kenneth B., Deterding, Leesa J.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.02 MB

english, 2011

34

A Difference Gel Electrophoresis Study on Thylakoids Isolated from Poplar Leaves Reveals a Negative Impact of Ozone Exposure on Membrane Proteins

Bohler, Sacha, Sergeant, Kjell, Hoffmann, Lucien, Dizengremel, Pierre, Hausman, Jean-Francois, Renaut, Jenny, Jolivet, Yves

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.94 MB

english, 2011

35

Protein Database and Quantitative Analysis Considerations when Integrating Genetics and Proteomics to Compare Mouse Strains

Fei, Suzanne S., Wilmarth, Phillip A., Hitzemann, Robert J., McWeeney, Shannon K., Belknap, John K., David, Larry L.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.84 MB

english, 2011

36

Quantitative Phospho-Proteomic Profiling of Hepatocyte Growth Factor (HGF)-MET Signaling in Colorectal Cancer

Organ, Shawna L., Tong, Jiefei, Taylor, Paul, St-Germain, Jonathan R., Navab, Roya, Moran, Michael F., Tsao, Ming-Sound

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.78 MB

english, 2011

37

Pinpointing Phosphorylation Sites: Quantitative Filtering and a Novel Site-specific x-Ion Fragment

Kelstrup, Christian D., Hekmat, Omid, Francavilla, Chiara, Olsen, Jesper V.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.97 MB

english, 2011

38

Quantitative Proteomic Analysis of Salmonella enterica Serovar Typhimurium under PhoP/PhoQ Activation Conditions

Yu, Jian-Lan, Guo, Lin

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 4.21 MB

english, 2011

39

Metabolic Capabilities and Systems Fluctuations in Haloarcula marismortui Revealed by Integrative Genomics and Proteomics Analyses

Chu, Lichieh Julie, Yang, Hanyin, Shih, Peiyin, Kao, Yuchieh, Tsai, Yihsuan Shannon, Chen, Jinzhi, Huang, Gueitang, Weng, Rueyhung Roc, Ting, Ying Sonia, Fang, Xuefeng, von Haller, Priska D., Goodlett

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 6.26 MB

english, 2011