Volume 10; Issue 5

Journal of Proteome Research

Volume 10; Issue 5

1

Proteomics Studies of Childhood Pilocytic Astrocytoma

Anagnostopoulos, Athanasios K., Dimas, Konstantinos S., Papathanassiou, Chrissa, Braoudaki, Maria, Anastasiadou, Ema, Vougas, Konstantinos, Karamolegou, Kalliopi, Kontos, Harry, Prodromou, Neofytos, T

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.83 MB

english, 2011

2

In-Depth Proteomics of Ovarian Cancer Ascites: Combining Shotgun Proteomics and Selected Reaction Monitoring Mass Spectrometry

Elschenbroich, Sarah, Ignatchenko, Vladimir, Clarke, Blaise, Kalloger, Steve E., Boutros, Paul C., Gramolini, Anthony O., Shaw, Patricia, Jurisica, Igor, Kislinger, Thomas

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.56 MB

english, 2011

3

Large Improvements in MS/MS-Based Peptide Identification Rates using a Hybrid Analysis

Cannon, William R., Rawlins, Mitchell M., Baxter, Douglas J., Callister, Stephen J., Lipton, Mary S., Bryant, Donald A.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.05 MB

english, 2011

4

Conserved and Unique Features of the Maize (Zea mays L.) Root Hair Proteome

Nestler, Josefine, Schütz, Wolfgang, Hochholdinger, Frank

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.06 MB

english, 2011

5

Proteins and an Inflammatory Network Expressed in Colon Tumors

Zhu, Wenhong, Fang, Changming, Gramatikoff, Kosi, Niemeyer, Christina C., Smith, Jeffrey W.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.26 MB

english, 2011

6

Proteomic Analysis of Mouse Oocytes Reveals 28 Candidate Factors of the “Reprogrammome”

Pfeiffer, Martin J., Siatkowski, Marcin, Paudel, Yogesh, Balbach, Sebastian T., Baeumer, Nicole, Crosetto, Nicola, Drexler, Hannes C. A., Fuellen, Georg, Boiani, Michele

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.12 MB

english, 2011

7

Using Ion Mobility Data to Improve Peptide Identification: Intrinsic Amino Acid Size Parameters

Valentine, Stephen J., Ewing, Michael A., Dilger, Jonathan M., Glover, Matthew S., Geromanos, Scott, Hughes, Chris, Clemmer, David E.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.10 MB

english, 2011

8

Search for the Tumor-Associated Proteins of Oral Squamous Cell Carcinoma Collected in Taiwan using Proteomics Strategy

Liao, Kuo-An, Tsay, Yeou-Guang, Huang, Li-Chien, Huang, Hsuan-Ying, Li, Chien-Feng, Wu, Ting-Feng

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.10 MB

english, 2011

9

Correlation between Protein Function and Ligand Binding Profiles

Shortridge, Matthew D., Bokemper, Michael, Copeland, Jennifer C., Stark, Jaime L., Powers, Robert

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 842 KB

english, 2011

10

Combined Metabonomic and Quantitative Real-Time PCR Analyses Reveal Systems Metabolic Changes of Fusarium graminearum Induced by Tri5 Gene Deletion

Chen, Fangfang, Zhang, Jingtao, Song, Xiushi, Yang, Jian, Li, Heping, Tang, Huiru, Liao, Yu-Cai

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.27 MB

english, 2011

11

Analysis of Leishmania chagasi by 2-D Difference Gel Eletrophoresis (2-D DIGE) and Immunoproteomic: Identification of Novel Candidate Antigens for Diagnostic Tests and Vaccine

Costa, Míriam M., Andrade, Hélida M., Bartholomeu, Daniella C., Freitas, Leandro M., Pires, Simone F., Chapeaurouge, Alexander D., Perales, Jonas, Ferreira, André T., Giusta, Mário S., Melo, Maria

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.72 MB

english, 2011

12

Characterization of the Human Myocardial Proteome in Inflammatory Dilated Cardiomyopathy by Label-free Quantitative Shotgun Proteomics of Heart Biopsies

Hammer, Elke, Goritzka, Michelle, Ameling, Sabine, Darm, Katrin, Steil, Leif, Klingel, Karin, Trimpert, Christiane, Herda, Lars R., Dörr, Marcus, Kroemer, Heyo K., Kandolf, Reinhard, Staudt, Alexande

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.07 MB

english, 2011

13

Improved Peptide Identification by Targeted Fragmentation Using CID, HCD and ETD on an LTQ-Orbitrap Velos

Frese, Christian K., Altelaar, A. F. Maarten, Hennrich, Marco L., Nolting, Dirk, Zeller, Martin, Griep-Raming, Jens, Heck, Albert J. R., Mohammed, Shabaz

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.71 MB

english, 2011

14

Phosphoproteomic Profiling of NSCLC Cells Reveals that Ephrin B3 Regulates Pro-survival Signaling through Akt1-Mediated Phosphorylation of the EphA2 Receptor

Ståhl, Sara, Mm Branca, Rui, Efazat, Ghazal, Ruzzene, Maria, Zhivotovsky, Boris, Lewensohn, Rolf, Viktorsson, Kristina, Lehtiö, Janne

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 5.43 MB

english, 2011

15

On the Relevance of Peptide Sequence Permutations in Shotgun Proteomics Studies

Yu, Long, Tan, Yanglan, Tsai, Yihsuan, Goodlett, David R., Polfer, Nick C.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.89 MB

english, 2011

16

Drug Target Identification from Protein Dynamics using Quantitative Pathway Analysis

Good, David M., Zubarev, Roman A.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.82 MB

english, 2011

17

Proteome Analysis of Cold Acclimation in Sunflower

Balbuena, Tiago S., Salas, Joaquín J., Martínez-Force, Enrique, Garcés, Rafael, Thelen, Jay J.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.70 MB

english, 2011

18

Identification and Relative Quantitation of an Orphan G-Protein Coupled Receptor SREB2 (GPR85) Protein in Tissue Using a Linear Ion Trap Mass Spectrometer

Yuri, Masatoshi, Hiramoto, Masashi, Naito, Masanori, Matsumoto, Mitsuyuki, Matsumoto, Shun-ichiro, Morita, Shuji, Mori, Keitaro, Yokota, Hiroyuki, Teramura, Toshio

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.53 MB

english, 2011

19

Role of Proteomics to Differentiate between Benign and Potentially Malignant Pancreatic Cysts

Cuoghi, Aurora, Farina, Annarita, Z’graggen, Kaspar, Dumonceau, Jean-Marc, Tomasi, Aldo, Hochstrasser, Denis F., Genevay, Muriel, Lescuyer, Pierre, Frossard, Jean-Louis

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.75 MB

english, 2011

20

Mass Spectrometric Assay for Analysis of Haptoglobin Fucosylation in Pancreatic Cancer

Lin, Zhenxin, Simeone, Diane M., Anderson, Michelle A., Brand, Randall E., Xie, Xiaolei, Shedden, Kerby A., Ruffin, Mack T., Lubman, David M.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.77 MB

english, 2011

21

Protein Alterations Associated with Pancreatic Cancer and Chronic Pancreatitis Found in Human Plasma using Global Quantitative Proteomics Profiling

Pan, Sheng, Chen, Ru, Crispin, David A., May, Damon, Stevens, Tyler, McIntosh, Martin W., Bronner, Mary P., Ziogas, Argyrios, Anton-Culver, Hoda, Brentnall, Teresa A.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 4.07 MB

english, 2011

22

Elucidation of Glycoprotein Structures by Unspecific Proteolysis and Direct nanoESI Mass Spectrometric Analysis of ZIC-HILIC-Enriched Glycopeptides

Neue, Kristina, Mormann, Michael, Peter-Katalinić, Jasna, Pohlentz, Gottfried

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.14 MB

english, 2011

23

Network-Based Pipeline for Analyzing MS Data: An Application toward Liver Cancer

Goh, Wilson Wen Bin, Lee, Yie Hou, Zubaidah, Ramdzan M., Jin, Jingjing, Dong, Difeng, Lin, Qingsong, Chung, Maxey C. M., Wong, Limsoon

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 4.58 MB

english, 2011

24

New Approaches for Biomarker Discovery: The Search for Liver Fibrosis Markers in Hepatitis C Patients

Gangadharan, Bevin, Antrobus, Robin, Chittenden, David, Rossa, Jan, Bapat, Manisha, Klenerman, Paul, Barnes, Eleanor, Dwek, Raymond A., Zitzmann, Nicole

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.53 MB

english, 2011

25

On Using Samples of Known Protein Content to Assess the Statistical Calibration of Scores Assigned to Peptide-Spectrum Matches in Shotgun Proteomics

Granholm, Viktor, Noble, William Stafford, Käll, Lukas

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.63 MB

english, 2011

26

Label-free Proteomics and Systems Biology Analysis of Mycobacterial Phagosomes in Dendritic Cells and Macrophages

Li, Qingbo, Singh, Christopher R., Ma, Shuyi, Price, Nathan D., Jagannath, Chinnaswamy

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.69 MB

english, 2011

27

Serum 27-nor-5β-Cholestane-3,7,12,24,25 Pentol Glucuronide Discovered by Metabolomics as Potential Diagnostic Biomarker for Epithelium Ovarian Cancer

Chen, Jing, Zhang, Xiaoyan, Cao, Rui, Lu, Xin, Zhao, Sumin, Fekete, Agnes, Huang, Qiang, Schmitt-Kopplin, Philippe, Wang, Yisheng, Xu, Zhiliang, Wan, Xiaoping, Wu, Xiaohua, Zhao, Naiqing, Xu, Congjian

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.13 MB

english, 2011

28

Comparative Proteomic Analysis of Lung Tissue from Patients with Idiopathic Pulmonary Fibrosis (IPF) and Lung Transplant Donor Lungs

Korfei, Martina, Schmitt, Sigrid, Ruppert, Clemens, Henneke, Ingrid, Markart, Philipp, Loeh, Benjamin, Mahavadi, Poornima, Wygrecka, Malgorzata, Klepetko, Walter, Fink, Ludger, Bonniaud, Philippe, Pre

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 9.11 MB

english, 2011

29

Comparative Proteomic Analysis of Proteins in Response to Simulated Acid Rain in Arabidopsis

Liu, Ting-Wu, Fu, Bin, Niu, Li, Chen, Juan, Wang, Wen-Hua, He, Jun-Xian, Pei, Zhen-Ming, Zheng, Hai-Lei

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 6.27 MB

english, 2011

30

Evaluation of P38 MAPK Pathway as a Molecular Signature in Ulcerative Colitis

Zhao, Xinmei, Kang, Bin, Lu, Chaolan, Liu, Siqi, Wang, Huanjing, Yang, Xiaoming, Chen, Ye, Jiang, Bo, Zhang, Jun, Lu, Youyong, Zhi, Fachao

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.02 MB

english, 2011

31

Proteomic Analysis of Human Transplanted Submandibular Gland in Patients with Epiphora after Transplantation

Ding, Chong, Zhang, Yan, Peng, Xin, Wang, Yang, Zhang, Lei, Cong, Xin, Ding, Qian-Wen, Xiang, Ruo-Lan, Wu, Li-Ling, Yu, Guang-Yan

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 4.90 MB

english, 2011

32

Proteome of the Caenorhabditis elegans Oocyte

Chik, John K., Schriemer, David C., Childs, Sarah J., McGhee, James D.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.48 MB

english, 2011

33

Utility of Characteristic QTOF MS/MS Fragmentation for MHC Class I Peptides

Escobar, Hernando, Reyes-Vargas, Eduardo, Jensen, Peter E., Delgado, Julio C., Crockett, David K.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 6.97 MB

english, 2011

34

Identification of Vascular Breast Tumor Markers by Laser Capture Microdissection and Label-Free LC−MS

Hill, Jennifer J., Tremblay, Tammy-Lynn, Pen, Ally, Li, Jie, Robotham, Anna C., Lenferink, Anne E. G., Wang, Edwin, O’Connor-McCourt, Maureen, Kelly, John F.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 5.54 MB

english, 2011

35

Integrated Analysis of ATM Mediated Gene and Protein Expression Impacting Cellular Metabolism

Cheema, Amrita K., Timofeeva, Olga, Varghese, Rency, Dimtchev, Alexandre, Shiekh, Kathryn, Shulaev, Vladimir, Suy, Simeng, Collins, Sean, Ressom, Habtom, Jung, Mira, Dritschilo, Anatoly

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.53 MB

english, 2011

36

1 H NMR-based Metabolomic Profiling in Mice Infected with Mycobacterium tuberculosis

Shin, Ji-Hyun, Yang, Ji-Young, Jeon, Bo-Young, Yoon, Yoo Jeong, Cho, Sang-Nae, Kang, Yeon-Ho, Ryu, Do Hyun, Hwang, Geum-Sook

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.55 MB

english, 2011

37

Analysis of the Aspergillus fumigatus Proteome Reveals Metabolic Changes and the Activation of the Pseurotin A Biosynthesis Gene Cluster in Response to Hypoxia

Vödisch, Martin, Scherlach, Kirstin, Winkler, Robert, Hertweck, Christian, Braun, Hans-Peter, Roth, Martin, Haas, Hubertus, Werner, Ernst R., Brakhage, Axel A., Kniemeyer, Olaf

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.02 MB

english, 2011

38

Study of Neurotrophin-3 Signaling in Primary Cultured Neurons using Multiplex Stable Isotope Labeling with Amino Acids in Cell Culture

Zhang, Guoan, Deinhardt, Katrin, Chao, Moses V., Neubert, Thomas A.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.34 MB

english, 2011

39

Outer Membrane Proteome of Burkholderia pseudomallei and Burkholderia mallei From Diverse Growth Conditions

Schell, Mark A., Zhao, Peng, Wells, Lance

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.27 MB

english, 2011

40

Proteomics Reveals that Redox Regulation Is Disrupted in Patients with Ethylmalonic Encephalopathy

Palmfeldt, Johan, Vang, Søren, Stenbroen, Vibeke, Pavlou, Evangelos, Baycheva, Mila, Buchal, Gebhard, Monavari, Ardeshir Ahmad, Augoustides-Savvopoulou, Persephone, Mandel, Hanna, Gregersen, Niels

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.61 MB

english, 2011

41

Simultaneous and Extensive Site-specific N- and O-Glycosylation Analysis in Protein Mixtures

Nwosu, Charles C., Seipert, Richard R., Strum, John S., Hua, Serenus S., An, Hyun Joo, Zivkovic, Angela M., German, Bruce J., Lebrilla, Carlito B.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 4.45 MB

english, 2011

42

Pseudechis australis Venomics: Adaptation for a Defense against Microbial Pathogens and Recruitment of Body Transferrin

Georgieva, Dessislava, Seifert, Jana, Öhler, Michaela, von Bergen, Martin, Spencer, Patrick, Arni, Raghuvir K., Genov, Nicolay, Betzel, Christian

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.06 MB

english, 2011

43

Root Responses of Medicago truncatula Plants Grown in Two Different Iron Deficiency Conditions: Changes in Root Protein Profile and Riboflavin Biosynthesis

Rodríguez-Celma, Jorge, Lattanzio, Giuseppe, Grusak, Michael A., Abadía, Anunciación, Abadía, Javier, López-Millán, Ana-Flor

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.04 MB

english, 2011

44

Proteomic Comparison of Plastids from Developing Embryos and Leaves of Brassica napus

Demartini, Diogo Ribeiro, Jain, Renuka, Agrawal, Ganesh, Thelen, Jay J.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 4.34 MB

english, 2011

45

Extracellular Hemoglobin Polarizes the Macrophage Proteome toward Hb-Clearance, Enhanced Antioxidant Capacity and Suppressed HLA Class 2 Expression

Kaempfer, Theresa, Duerst, Elena, Gehrig, Peter, Roschitzki, Bernd, Rutishauser, Dorothea, Grossmann, Jonas, Schoedon, Gabriele, Vallelian, Florence, Schaer, Dominik J.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 4.46 MB

english, 2011

46

Quantitative Proteomic Analysis of Dystrophic Dog Muscle

Guevel, Laetitia, Lavoie, Jessie R., Perez-Iratxeta, Carolina, Rouger, Karl, Dubreil, Laurence, Feron, Marie, Talon, Sophie, Brand, Marjorie, Megeney, Lynn A.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.93 MB

english, 2011

47

MassWiz: A Novel Scoring Algorithm with Target-Decoy Based Analysis Pipeline for Tandem Mass Spectrometry

Yadav, Amit Kumar, Kumar, Dhirendra, Dash, Debasis

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.59 MB

english, 2011

48

Going Nuts for Nuts? The Trace Proteome of a Cola Drink, as Detected via Combinatorial Peptide Ligand Libraries

D’Amato, Alfonsina, Fasoli, Elisa, Kravchuk, Alexander V., Righetti, Pier Giorgio

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.49 MB

english, 2011

49

Comparative proteomic analysis of Helicoverpa armigera cells undergoing apoptosis

Courtiade, Juliette, Muck, Alexander, Svatoš, Aleš, Heckel, David G., Pauchet, Yannick

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 4.48 MB

english, 2011