Volume 10; Issue 2

Journal of Proteome Research

Volume 10; Issue 2

1

Quantitative Proteomic Analysis of Cell Wall and Plasma Membrane Fractions from Multidrug-Resistant Acinetobacter baumannii

Yun, Sung-Ho, Choi, Chi-Won, Kwon, Sang-Oh, Park, Gun Wook, Cho, Kun, Kwon, Kyung-Hoon, Kim, Jin Young, Yoo, Jong Shin, Lee, Je Chul, Choi, Jong-Soon

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.64 MB

english, 2011

2

Quantitative Proteomic Analysis of Tumor Reversion in Multiple Myeloma Cells

Ge, Feng, Zhang, Liang, Tao, Sheng-Ce, Kitazato, Kaio, Zhang, Zhi-Ping, Zhang, Xian-En, Bi, Li-Jun

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.45 MB

english, 2011

3

Modeling Contaminants in AP-MS/MS Experiments

Lavallée-Adam, Mathieu, Cloutier, Philippe, Coulombe, Benoit, Blanchette, Mathieu

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 368 KB

english, 2011

4

Targeted Proteomic Analysis of Glycolysis in Cancer Cells

Murphy, J. Patrick, Pinto, Devanand M.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 383 KB

english, 2011

5

Two-Dimensional Differential in Gel Electrophoresis (2D-DIGE) Analysis of Grape Berry Proteome during Postharvest Withering

Di Carli, Mariasole, Zamboni, Anita, Pè, Mario Enrico, Pezzotti, Mario, Lilley, Kathryn S., Benvenuto, Eugenio, Desiderio, Angiola

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 7.39 MB

english, 2011

6

In Silico Protein Interaction Analysis Using the Global Proteome Machine Database

Zhang, Cheng-Cheng, Rogalski, Jason C., Evans, Daniel M., Klockenbusch, Cordula, Beavis, Ronald C., Kast, Juergen

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 537 KB

english, 2011

7

Metabolomic Approach with LC-QTOF to Study the Effect of a Nutraceutical Treatment on Urine of Diabetic Rats

Godzien, Joanna, Ciborowski, Michal, Angulo, Santiago, Ruperez, Francisco J., Paz Martínez, M, Señorans, Francisco J., Cifuentes, Alejandro, Ibañez, Elena, Barbas, Coral

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.93 MB

english, 2011

8

Quantitative Proteome and Acidic Subproteome Profiling of Candida albicans Yeast-to-Hypha Transition

Monteoliva, Lucia, Martinez-Lopez, Raquel, Pitarch, Aida, Hernaez, Maria Luisa, Serna, Antonio, Nombela, Cesar, Albar, Juan Pablo, Gil, Concha

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.27 MB

english, 2011

9

Annotation and Structural Analysis of Sialylated Human Milk Oligosaccharides

Wu, Shuai, Grimm, Rudolf, German, J. Bruce, Lebrilla, Carlito B.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 4.21 MB

english, 2011

10

Are Patients with Potential Celiac Disease Really Potential? The Answer of Metabonomics

Bernini, Patrizia, Bertini, Ivano, Calabrò, Antonio, la Marca, Giancarlo, Lami, Gabriele, Luchinat, Claudio, Renzi, Daniela, Tenori, Leonardo

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 190 KB

english, 2011

11

Metabonomic Study of Chinese Medicine Shuanglong Formula as an Effective Treatment for Myocardial Infarction in Rats

Liang, Xiaoping, Chen, Xi, Liang, Qionglin, Zhang, Hongyang, Hu, Ping, Wang, Yiming, Luo, Guoan

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 419 KB

english, 2011

12

Are Scoring Functions in Protein−Protein Docking Ready to Predict Interactomes? Clues from a Novel Binding Affinity Benchmark

Kastritis, Panagiotis L., Bonvin, Alexandre M. J. J.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1002 KB

english, 2011

13

Quantitative Analysis of the Intra- and Inter-Individual Variability of the Normal Urinary Proteome

Nagaraj, Nagarjuna, Mann, Matthias

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.07 MB

english, 2011

14

GC−MS Metabolomic Analysis Reveals Significant Alterations in Cerebellar Metabolic Physiology in a Mouse Model of Adult Onset Hypothyroidism

Constantinou, Caterina, Chrysanthopoulos, Panagiotis K., Margarity, Marigoula, Klapa, Maria I.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 473 KB

english, 2011

15

Proteome Analysis Reveals a Large Merozoite Surface Protein-1 Associated Complex on the Plasmodium falciparum Merozoite Surface

Ranjan, Ravi, Chugh, Monika, Kumar, Saravanan, Singh, Shivani, Kanodia, Shivani, Hossain, Manzar J., Korde, Reshma, Grover, Amit, Dhawan, Shikha, Chauhan, Virander S., Reddy, Vanga S., Mohmmed, Asif,

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.30 MB

english, 2011

16

Proteomics on Brefeldin A-Treated Arabidopsis Roots Reveals Profilin 2 as a New Protein Involved in the Cross-Talk between Vesicular Trafficking and the Actin Cytoskeleton

Takáč, Tomáš, Pechan, Tibor, Richter, Hendrik, Müller, Jens, Eck, Carola, Böhm, Nils, Obert, Bohuš, Ren, Haiyun, Niehaus, Karsten, Šamaj, Jozef

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.09 MB

english, 2011

17

The Effect of Silicon on the Leaf Proteome of Rice ( Oryza sativa L.) Plants under Cadmium-Stress

Nwugo, Chika C., Huerta, Alfredo J.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.81 MB

english, 2011

18

Systems Responses of Rats to Aflatoxin B1 Exposure Revealed with Metabonomic Changes in Multiple Biological Matrices

Zhang, Limin, Ye, Yangfang, An, Yanpeng, Tian, Yuan, Wang, Yulan, Tang, Huiru

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.72 MB

english, 2011

19

A Protein Processing Filter Method for Bacterial Identification by Mass Spectrometry-Based Proteomics

Jabbour, Rabih E., Deshpande, Samir V., Stanford, Michael F., Wick, Charles H., Zulich, Alan W., Snyder, A. Peter

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.15 MB

english, 2011

20

Systematic Proteome Analysis Identifies Transcription Factor YY1 as a Direct Target of miR-34a

Chen, Qing-Rong, Yu, Li-Rong, Tsang, Patricia, Wei, Jun S., Song, Young K., Cheuk, Adam, Chung, Joon-Yong, Hewitt, Stephen M., Veenstra, Timothy D., Khan, Javed

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.11 MB

english, 2011

21

Addressing Trypsin Bias in Large Scale (Phospho)proteome Analysis by Size Exclusion Chromatography and Secondary Digestion of Large Post-Trypsin Peptides

Tran, Bao Quoc, Hernandez, Celine, Waridel, Patrice, Potts, Alexandra, Barblan, Jachen, Lisacek, Frederique, Quadroni, Manfredo

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 337 KB

english, 2011

22

Influence of Histatin 5 on Candida albicans Mitochondrial Protein Expression Assessed by Quantitative Mass Spectrometry

Komatsu, Tomoko, Salih, Erdjan, Helmerhorst, Eva J., Offner, Gwynneth D., Oppenheim, Frank G.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 875 KB

english, 2011

23

Lesson from the Stoichiometry Determination of the Cohesin Complex: A Short Protease Mediated Elution Increases the Recovery from Cross-Linked Antibody-Conjugated Beads

Holzmann, Johann, Fuchs, Johannes, Pichler, Peter, Peters, Jan-Michael, Mechtler, Karl

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.53 MB

english, 2011

24

DIGE-Based Protein Expression Analysis of B[a]P-Exposed Hepatoma Cells Reveals a Complex Stress Response Including Alterations in Oxidative Stress, Cell Cycle Control, and Cytoskeleton Motility at Toxic and Subacute Concentrations

Dautel, Franziska, Kalkhof, Stefan, Trump, Saskia, Michaelson, Jacob, Beyer, Andreas, Lehmann, Irina, von Bergen, Martin

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.61 MB

english, 2011

25

Comprehensive Plasma Thiol Redox Status Determination for Metabolomics

D’Agostino, Lisa A., Lam, Karen P., Lee, Richard, Britz-McKibbin, Philip

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.91 MB

english, 2011

26

New Insights into Neuroblastoma Cisplatin Resistance: A Comparative Proteomic and Meta-Mining Investigation

D’Aguanno, Simona, D’Alessandro, Annamaria, Pieroni, Luisa, Roveri, Antonella, Zaccarin, Mattia, Marzano, Valeria, Canio, Michele De, Bernardini, Sergio, Federici, Giorgio, Urbani, Andrea

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.54 MB

english, 2011

27

Differential Histone Modification and Protein Expression Associated with Cell Wall Removal and Regeneration in Rice ( Oryza sativa )

Tan, Feng, Zhang, Kangling, Mujahid, Hana, Verma, Desh Pal S., Peng, Zhaohua

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.62 MB

english, 2011

28

Detection of Differential Proteomes Associated with the Development of Type 2 Diabetes in the Zucker Rat Model Using the iTRAQ Technique

Han, Dohyun, Moon, Sungyoon, Kim, Hyunsoo, Choi, Sung-E, Lee, Soo-Jin, Park, Kyong Soo, Jun, Heesook, Kang, Yup, Kim, Youngsoo

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.61 MB

english, 2011

29

Chlorinated Benzenes Cause Concomitantly Oxidative Stress and Induction of Apoptotic Markers in Lung Epithelial Cells (A549) at Nonacute Toxic Concentrations

Mörbt, Nora, Tomm, Janina, Feltens, Ralph, Mögel, Iljana, Kalkhof, Stefan, Murugesan, Kalaimathi, Wirth, Henry, Vogt, Carsten, Binder, Hans, Lehmann, Irina, von Bergen, Martin

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.06 MB

english, 2011

30

Metabonomic Investigation of Liver Profiles of Nonpolar Metabolites Obtained from Alcohol-Dosed Rats and Mice Using High Mass Accuracy MS n Analysis

Loftus, Neil, Barnes, Alan, Ashton, Simon, Michopoulos, Filippos, Theodoridis, Georgios, Wilson, Ian, Ji, Cheng, Kaplowitz, Neil

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.00 MB

english, 2011

31

2D Difference Gel Electrophoresis Analysis of Different Time Points during the Course of Neoplastic Transformation of Human Mammary Epithelial Cells

DeAngelis, J. Tyson, Li, Yuanyuan, Mitchell, Natalie, Wilson, Landon, Kim, Helen, Tollefsbol, Trygve O.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.89 MB

english, 2011

32

Development of a Highly Efficient 2-D System with a Serially Coupled Long Column and Its Application in Identification of Rat Brain Integral Membrane Proteins with Ionic Liquids-Assisted Solubilization and Digestion

Tao, Dingyin, Qiao, Xiaoqiang, Sun, Liangliang, Hou, Chunyan, Gao, Liang, Zhang, Lihua, Shan, Yichu, Liang, Zhen, Zhang, Yukui

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.48 MB

english, 2011

33

Quantitation of Soybean Allergens Using Tandem Mass Spectrometry

Houston, Norma L., Lee, Dong-Gi, Stevenson, Severin E., Ladics, Gregory S., Bannon, Gary A., McClain, Scott, Privalle, Laura, Stagg, Nicola, Herouet-Guicheney, Corinne, MacIntosh, Susan C., Thelen, Ja

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.40 MB

english, 2011

34

Metabolomic Analysis of Livers and Serum from High-Fat Diet Induced Obese Mice

Kim, Hyun-Jin, Kim, Jin Hee, Noh, Siwon, Hur, Haeng Jeon, Sung, Mi Jeong, Hwang, Jin-Taek, Park, Jae Ho, Yang, Hye Jeong, Kim, Myung-Sunny, Kwon, Dae Young, Yoon, Suk Hoo

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.44 MB

english, 2011

35

ATP Enhances Neuronal Differentiation of PC12 Cells by Activating PKCα Interactions with Cytoskeletal Proteins

Marín-Vicente, Consuelo, Guerrero-Valero, Marta, Nielsen, Michael L., Savitski, Mikhail M., Gómez-Fernández, Juan C., Zubarev, Roman A., Corbalán-García, Senena

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.71 MB

english, 2011

36

Networked-based Characterization of Extracellular Matrix Proteins from Adult Mouse Pulmonary and Aortic Valves

Angel, Peggi M., Nusinow, David, Brown, Chris B., Violette, Kate, Barnett, Joey V., Zhang, Bing, Baldwin, H. Scott, Caprioli, Richard M.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 4.87 MB

english, 2011

37

Initial Development and Validation of a Novel Extraction Method for Quantitative Mining of the Formalin-Fixed, Paraffin-Embedded Tissue Proteome for Biomarker Investigations

Nirmalan, Niroshini J., Hughes, Christopher, Peng, Jianhe, McKenna, Therese, Langridge, James, Cairns, David A., Harnden, Patricia, Selby, Peter J., Banks, Rosamonde E.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.70 MB

english, 2011

38

Proteomic Response to Sublethal Cadmium Exposure in a Sentinel Fish Species, Cottus gobio

Dorts, Jennifer, Kestemont, Patrick, Dieu, Marc, Raes, Martine, Silvestre, Frédéric

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.00 MB

english, 2011

39

Protein Pathway Activation Associated with Sustained Virologic Response in Patients with Chronic Hepatitis C Treated with Pegylated Interferon (PEG-IFN) and Ribavirin (RBV)

Younossi, Zobair M., Limongi, Dolores, Stepanova, Maria, Pierobon, Mariaelena, Afendy, Arian, Mehta, Rohini, Baranova, Ancha, Liotta, Lance., Petricoin, Emanuel.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.69 MB

english, 2011

40

Insight into the Salivary Transcriptome and Proteome of Dipetalogaster maxima

Assumpção, Teresa C. F., Charneau, Sébastien, Santiago, Paula B. M., Francischetti, Ivo M. B., Meng, Zhaojing, Araújo, Carla N., Pham, Van M., Queiroz, Rayner M. L., Nery de Castro, Cleudson, Andr

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.19 MB

english, 2011

41

Cancer Drug-Resistance and a Look at Specific Proteins: Rho GDP-Dissociation Inhibitor 2, Y-Box Binding Protein 1, and HSP70/90 Organizing Protein in Proteomics Clinical Application

Skalnikova, Helena, Martinkova, Jirina, Hrabakova, Rita, Halada, Petr, Dziechciarkova, Marta, Hajduch, Marian, Gadher, Suresh Jivan, Hammar, Andreas, Enetoft, Daniel, Ekefjard, Andreas, Forsstrom-Olss

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.31 MB

english, 2011

42

Analysis of the Disulfide Bond Arrangement of the HIV-1 Envelope Protein CON-S gp140 ΔCFI Shows Variability in the V1 and V2 Regions

Go, Eden P., Zhang, Ying, Menon, Sushma, Desaire, Heather

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 10.67 MB

english, 2011

43

24-Hour Lock Mass Protection

Lee, Kimberly A., Farnsworth, Chris, Yu, Wen, Bonilla, Leo E.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.76 MB

english, 2011

44

Probing the Proteome Response to Toluene Exposure in the Solvent Tolerant Pseudomonas putida S12

Wijte, Dorien, van Baar, Ben L. M., Heck, Albert J. R., Altelaar, A. F. Maarten

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.73 MB

english, 2011

45

Dynamic Omics Approach Identifies Nutrition-Mediated Microbial Interactions

Nakanishi, Yumiko, Fukuda, Shinji, Chikayama, Eisuke, Kimura, Yayoi, Ohno, Hiroshi, Kikuchi, Jun

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 3.67 MB

english, 2011

46

Mass Spectrometric Analysis of Synapsins in Drosophila melanogaster and Identification of Novel Phosphorylation Sites

Nuwal, Tulip, Heo, Seok, Lubec, Gert, Buchner, Erich

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 4.95 MB

english, 2011

47

Exploration of Bovine Milk Proteome in Colostral and Mature Whey Using an Ion-Exchange Approach

Le, Anh, Barton, L. Douglas, Sanders, Jeff T., Zhang, Qiang

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 497 KB

english, 2011

48

Identification of Novel Proteins from the Venom of a Cryptic Snake Drysdalia coronoides by a Combined Transcriptomics and Proteomics Approach

Chatrath, Shifali Tiwari, Chapeaurouge, Alex, Lin, Qingsong, Lim, Teck Kwang, Dunstan, Nathan, Mirtschin, Peter, Kumar, Prakash P., Kini, R. Manjunatha

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 4.24 MB

english, 2011

49

Mass Spectrometry Detection of Histidine Phosphorylation on NM23-H1

Lapek, John D., Tombline, Gregory, Friedman, Alan E.

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 1.93 MB

english, 2011

50

2D-Difference Gel Electrophoretic Proteomic Analysis of a Cell Culture Model of Alveolar Rhabdomyosarcoma

Pressey, Joseph G., Pressey, Christine S., Robinson, Gloria, Herring, Richie, Wilson, Landon, Kelly, David R., Kim, Helen

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.24 MB

english, 2011

51

Identification of Potentially Involved Proteins in Levofloxacin Resistance Mechanisms in Coxiella burnetii

Vranakis, Iosif, De Bock, Pieter-Jan, Papadioti, Anastasia, Tselentis, Yannis, Gevaert, Kris, Tsiotis, Georgios, Psaroulaki, Anna

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 417 KB

english, 2011

52

IsobariQ: Software for Isobaric Quantitative Proteomics using IPTL, iTRAQ, and TMT

Arntzen, Magnus Ø., Koehler, Christian J., Barsnes, Harald, Berven, Frode S., Treumann, Achim, Thiede, Bernd

Journal:

Journal of Proteome Research

Année:

2011

Langue:

english

Fichier:

PDF, 2.44 MB

english, 2011