S.S. Hannenhalli : rechercher sur Z-Library

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1

The evolution of Fox genes and their role in development and disease

Hannenhalli, Sridhar, Kaestner, Klaus H.

Journal:

Nature Reviews Genetics

Année:

2009

Langue:

english

Fichier:

PDF, 425 KB

english, 2009

2

Inferring evolution of gene duplicates using probabilistic models and nonparametric belief propagation

Jia Zeng, Sridhar Hannenhalli

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 2.80 MB

english, 2013

3

Genomic analysis of sleep deprivation reveals translational regulation in the hippocampus

Vecsey, C. G., Peixoto, L., Choi, J. H. K., Wimmer, M., Jaganath, D., Hernandez, P. J., Blackwell, J., Meda, K., Park, A. J., Hannenhalli, S., Abel, T.

Journal:

Physiological Genomics

Année:

2012

Langue:

english

Fichier:

PDF, 278 KB

english, 2012

4

PTM-Switchboard--a database of posttranslational modifications of transcription factors, the mediating enzymes and target genes

Everett, L., Vo, A., Hannenhalli, S.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 378 KB

english, 2009

5

Putative functional genes in idiopathic dilated cardiomyopathy

Nair, Nishanth Ulhas, Das, Avinash, Amit, Uri, Robinson, Welles, Park, Seung Gu, Basu, Mahashweta, Lugo, Alex, Leor, Jonathan, Ruppin, Eytan, Hannenhalli, Sridhar

Journal:

Scientific Reports

Année:

2018

Langue:

english

Fichier:

PDF, 1.61 MB

english, 2018

6

Polynomial-time algorithm for computing translocation distance between genomes

Sridhar Hannenhalli

Journal:

Discrete Applied Mathematics

Année:

1996

Langue:

english

Fichier:

PDF, 1.01 MB

english, 1996

7

Accelerated evolution of 3'avian FOXE1 genes, and thyroid and feather specific expression of chicken FoxE1

Sergey Yu Yaklichkin, Diana K Darnell, Maricela V Pier, Parker B Antin, Sridhar Hannenhalli

Journal:

BMC Evolutionary Biology

Année:

2011

Langue:

english

Fichier:

PDF, 1.07 MB

english, 2011

8

Mimosa: Mixture model of co-expression to detect modulators of regulatory interaction

Matthew Hansen, Logan Everett, Larry Singh, Sridhar Hannenhalli

Journal:

Algorithms for Molecular Biology

Année:

2010

Langue:

english

Fichier:

PDF, 719 KB

english, 2010

9

Identification of transcription factor binding sites in the human genome sequence

Samuel Levy, Sridhar Hannenhalli

Journal:

Mammalian Genome

Année:

2002

Langue:

english

Fichier:

PDF, 135 KB

english, 2002

10

Transcriptional regulation of protein complexes and biological pathways

Sridhar Hannenhalli, Samuel Levy

Journal:

Mammalian Genome

Année:

2003

Langue:

english

Fichier:

PDF, 158 KB

english, 2003

11

Resistin gene variation is associated with systemic inflammation but not plasma adipokine levels, metabolic syndrome or coronary atherosclerosis in nondiabetic Caucasians

Atif N. Qasim, Thomas S. Metkus, Mahlet Tadesse, Michael Lehrke, Stephanie Restine, Megan L. Wolfe, Sridhar Hannenhalli, Thomas Cappola, Daniel J. Rader, Muredach P. Reilly

Journal:

Clinical Endocrinology

Année:

2009

Langue:

english

Fichier:

PDF, 137 KB

english, 2009

12

Genome-wide analysis of retroviral DNA integration

Bushman, Frederic, Lewinski, Mary, Ciuffi, Angela, Barr, Stephen, Leipzig, Jeremy, Hannenhalli, Sridhar, Hoffmann, Christian

Journal:

Nature Reviews Microbiology

Année:

2005

Langue:

english

Fichier:

PDF, 908 KB

english, 2005

13

Sequencing by Hybridization (SBH): Advantages, Achievements, and Opportunities || Chip Technology

Hoheisel, Jörg, Brazma, A., Büssow, K., Cantor, C. R., Christians, F. C., Chui, G., Diaz, R., Drmanac, R., Drmanac, S., Eickhoff, H., Fellenberg, K., Hannenhalli, S., Hoheisel, J., Hou, A., Hubbell, E

Année:

2002

Langue:

english

Fichier:

PDF, 339 KB

english, 2002

14

Identification and cross-species comparison of canine osteoarthritic gene regulatory cis-elements

S.S. Hannenhalli, R.P. Middleton, S. Levy, B. Perroud, J.A. Holzwarth, K. McDonald, S.S. Hannah

Journal:

Osteoarthritis and Cartilage

Année:

2006

Langue:

english

Fichier:

PDF, 348 KB

english, 2006

15

Variola virus topoisomerase: DNA cleavage specificity and distribution of sites in Poxvirus genomes

Nana Minkah, Young Hwang, Kay Perry, Gregory D. Van Duyne, Robert Hendrickson, Elliot J. Lefkowitz, Sridhar Hannenhalli, Frederic D. Bushman

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 882 KB

english, 2007

16

Generalizations of Markov model to characterize biological sequences

Junwen Wang, Sridhar Hannenhalli

Journal:

BMC Bioinformatics

Année:

2005

Langue:

english

Fichier:

PDF, 413 KB

english, 2005

17

Recurring genomic breaks in independent lineages support genomic fragility

Hanno Hinsch, Sridhar Hannenhalli

Journal:

BMC Evolutionary Biology

Année:

2006

Langue:

english

Fichier:

PDF, 596 KB

english, 2006

18

MetaProm: a neural network based meta-predictor for alternative human promoter prediction

Junwen Wang, Lyle H Ungar, Hung Tseng, Sridhar Hannenhalli

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 656 KB

english, 2007

19

Genome Sequence Comparison and Scenarios for Gene Rearrangements: A Test Case

Sridhar Hannenhalli, Colombe Chappey, Eugene V. Koonin, Pavel A. Pevzner

Journal:

Année:

1995

Langue:

english

Fichier:

PDF, 238 KB

english, 1995

20

Analysis and prediction of functional sub-types from protein sequence alignments

Sridhar S. Hannenhalli, Robert B. Russell

Journal:

Journal of Molecular Biology

Année:

2000

Langue:

english

Fichier:

PDF, 1.04 MB

english, 2000

21

A mammalian promoter model links cis elements to genetic networks

Junwen Wang, Sridhar Hannenhalli

Journal:

Biochemical and Biophysical Research Communications

Année:

2006

Langue:

english

Fichier:

PDF, 2.16 MB

english, 2006

22

CHARACTERIZATION OF Ath17, A QUANTITATIVE TRAIT LOCUS FOR ATHEROSCLEROSIS SUSCEPTIBILITY BETWEEN C57BL/6J AND 129S1/SvImJ; SINGLE-NUCLEOTIDE POLYMORPHISMS HAVE IMPORTANT IMPLICATIONS ON IDENTIFYING ATHEROSCLEROSIS MODIFIER GENES

Naoki Ishimori, Kenneth Walsh, Xiangqun Zheng, Fu Lu, Sridhar Hannenhalli, Deborah Nusskern, Richard Mural, Beverly Paigen

Journal:

Cardiovascular Pathology

Année:

2004

Langue:

english

Fichier:

PDF, 34 KB

english, 2004

23

Hopx and Hdac2 Interact to Modulate Gata4 Acetylation and Embryonic Cardiac Myocyte Proliferation

Chinmay M. Trivedi, Wenting Zhu, Qiaohong Wang, Cheng Jia, Hae Jin Kee, Li Li, Sridhar Hannenhalli, Jonathan A. Epstein

Journal:

Developmental Cell

Année:

2010

Langue:

english

Fichier:

PDF, 1.24 MB

english, 2010

24

[Lecture Notes in Computer Science] Algorithms in Bioinformatics Volume 4645 || Algorithms for the Extraction of Synteny Blocks from Comparative Maps

Giancarlo, Raffaele, Hannenhalli, Sridhar

Année:

2007

Langue:

english

Fichier:

PDF, 605 KB

english, 2007

25

Functional divergence of gene duplicates – a domain-centric view

Mugdha Khaladkar, Sridhar Hannenhalli

Journal:

BMC Evolutionary Biology

Année:

2012

Langue:

english

Fichier:

PDF, 307 KB

english, 2012

26

[Lecture Notes in Computer Science] Algorithms in Bioinformatics Volume 4645 || A Graph Clustering Approach to Weak Motif Recognition

Giancarlo, Raffaele, Hannenhalli, Sridhar

Année:

2007

Langue:

english

Fichier:

PDF, 417 KB

english, 2007

27

Intrinsically disordered proteins and conformational noise

Mahmoudabadi, Gita, Rajagopalan, Krithika, Getzenberg, Robert H., Hannenhalli, Sridhar, Rangarajan, Govindan, Kulkarni, Prakash

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 1.82 MB

english, 2013

28

Widespread evidence of viral miRNAs targeting host pathways

Joseph W Carl Jr, Joanne Trgovcich, Sridhar Hannenhalli

Journal:

BMC Bioinformatics

Année:

2013

Langue:

english

Fichier:

PDF, 222 KB

english, 2013

29

Derepression of Cancer/Testis Antigens in cancer is associated with distinct patterns of DNA Hypomethylation

Robert Kim, Prakash Kulkarni, Sridhar Hannenhalli

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 520 KB

english, 2013

30

Dirichlet process model for joint haplotype inference and GWAS

Avinash Das Sahu, Sridhar Hannenhalli

Journal:

BMC Proceedings

Année:

2012

Langue:

english

Fichier:

PDF, 68 KB

english, 2012

31

Enhancer network revealed by correlated DNAse HS states of enhancers

Justin Malin, Radhouane Aniba, Sridhar Hannenhalli

Journal:

BMC Proceedings

Année:

2012

Langue:

english

Fichier:

PDF, 65 KB

english, 2012

32

Motifs andcis-regulatory modules mediating the expression of genes co-expressed in presynaptic neurons

Rui Liu, Sridhar Hannenhalli, Maja Bucan

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 4.22 MB

english, 2009

33

Genome-wide expression profiling and bioinformatics analysis of diurnally regulated genes in the mouse prefrontal cortex

Shuzhang Yang, Kai Wang, Otto Valladares, Sridhar Hannenhalli, Maja Bucan

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 1.04 MB

english, 2007

34

Patterns of sequence conservation in presynaptic neural genes

Dexter Hadley, Tara Murphy, Otto Valladares, Sridhar Hannenhalli…

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 1.33 MB

english, 2006

35

Three Independent Determinants of Protein Evolutionary Rate

Sun Shim Choi, Sridhar Hannenhalli

Journal:

Journal of Molecular Evolution

Année:

2013

Langue:

english

Fichier:

PDF, 511 KB

english, 2013

36

[Lecture Notes in Computer Science] Algorithms in Bioinformatics Volume 4645 ||

Giancarlo, Raffaele, Hannenhalli, Sridhar

Année:

2007

Langue:

english

Fichier:

PDF, 17.82 MB

english, 2007

37

Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals

Hannenhalli, Sridhar, Pevzner, Pavel A.

Journal:

Journal of the ACM

Année:

1999

Langue:

english

Fichier:

PDF, 255 KB

english, 1999

38

Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model

AGARWALA, RICHA, BATZOGLOU, SERAFIM, DANČÍK, VLADO, DECATUR, SCOTT E., HANNENHALLI, SRIDHAR, FARACH, MARTIN, MUTHUKRISHNAN, S., SKIENA, STEVEN

Journal:

Journal of Computational Biology

Année:

1997

Langue:

english

Fichier:

PDF, 8.91 MB

english, 1997

39

Myocardin-like protein 2 regulates TGF signaling in embryonic stem cells and the developing vasculature

Li, J., Bowens, N., Cheng, L., Zhu, X., Chen, M., Hannenhalli, S., Cappola, T. P., Parmacek, M. S.

Journal:

Development (The Company of Biologists)

Année:

2012

Langue:

english

Fichier:

PDF, 3.09 MB

english, 2012

40

Conservation in first introns is positively associated with the number of exons within genes and the presence of regulatory epigenetic signals

Seung Gu Park,Sridhar Hannenhalli,Sun Shim Choi

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 4.74 MB

english, 2014

41

[IEEE Comput. Soc. Press ICCI `92: Fourth International Conference on Computing and Information - Toronto, Ont., Canada (28-30 May 1992)] Proceedings ICCI `92: Fourth International Conference on Computing and Information - Efficient algorithms for computing matching and chromatic polynomials on series-parallel graphs

Chandrasekharan, N., Hannenhalli, S.

Année:

1992

Langue:

english

Fichier:

PDF, 365 KB

english, 1992

42

Genome-Wide Analysis of Chromosomal Features Repressing Human Immunodeficiency Virus Transcription

Lewinski, M. K., Bisgrove, D., Shinn, P., Chen, H., Hoffmann, C., Hannenhalli, S., Verdin, E., Berry, C. C., Ecker, J. R., Bushman, F. D.

Journal:

Journal of Virology

Année:

2005

Langue:

english

Fichier:

PDF, 1.11 MB

english, 2005

43

[IEEE Comput. Soc Compression and Complexity of SEQUENCES 1997 - Salerno, Italy (11-13 June 1997)] Proceedings. Compression and Complexity of SEQUENCES 1997 (Cat. No.97TB100171) - Hardness of flip-cut problems from optical mapping [DNA molecules application]

Dancik, V., Hannenhalli, S., Muthukrishnan, S.

Année:

1998

Langue:

english

Fichier:

PDF, 588 KB

english, 1998

44

[IEEE Comput. Soc. Press ICCI'93: 5th International Conference on Computing and Information - Sudbury, Ont., Canada (27-29 May 1993)] Proceedings of ICCI'93: 5th International Conference on Computing and Information - A distributed algorithm for ear decomposition

Hannenhalli, S., Perumalla, K., Chandrasekharan, N., Sridhar, R.

Année:

1993

Langue:

english

Fichier:

PDF, 408 KB

english, 1993

45

[IEEE Comput. Soc. Press IEEE International Conference on Application Specific Array Processors (ASSAP'94) - San Francisco, CA, USA (22-24 Aug. 1994)] Proceedings of IEEE International Conference on Application Specific Array Processors (ASSAP'94) - A SIMD solution to the sequence comparison problem on the MGAP

Borah, M., Bajwa, R.S., Hannenhalli, S., Irwin, M.J.

Année:

1994

Langue:

english

Fichier:

PDF, 504 KB

english, 1994

46

[IEEE Comput. Soc. Press IEEE 36th Annual Foundations of Computer Science - Milwaukee, WI, USA (23-25 Oct. 1995)] Proceedings of IEEE 36th Annual Foundations of Computer Science - Transforming men into mice (polynomial algorithm for genomic distance problem)

Hannenhalli, S., Pevzner, P.A.

Année:

1995

Langue:

english

Fichier:

PDF, 1.12 MB

english, 1995

47

Ligand-Receptor Pairing Via Tree Comparison

Bafna, Vineet, Hannenhalli, Sridhar, Rice, Ken, Vawter, Lisa

Journal:

Journal of Computational Biology

Année:

2000

Langue:

english

Fichier:

PDF, 260 KB

english, 2000

48

A Note on Efficient Computation of Haplotypes via Perfect Phylogeny

Bafna, Vineet, Gusfield, Dan, Hannenhalli, Sridhar, Yooseph, Shibu

Journal:

Journal of Computational Biology

Année:

2004

Langue:

english

Fichier:

PDF, 90 KB

english, 2004

49

RNA-Seq identifies novel myocardial gene expression signatures of heart failure

Liu, Yichuan, Morley, Michael, Brandimarto, Jeffrey, Hannenhalli, Sridhar, Hu, Yu, Ashley, Euan A., Tang, W.H. Wilson, Moravec, Christine S., Margulies, Kenneth B., Cappola, Thomas P., Li, Mingyao

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 1.10 MB

english, 2015

50

[Lecture Notes in Computer Science] Algorithms in Bioinformatics Volume 4645 || Bringing Folding Pathways into Strand Pairing Prediction

Giancarlo, Raffaele, Hannenhalli, Sridhar

Année:

2007

Langue:

english

Fichier:

PDF, 469 KB

english, 2007